RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 ZKSCAN5Q9Y2L8 839 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 SLC4A4Q9Y6R1 1079 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 ZFYVE9O95405 1425 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 NPATQ14207 1427 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 SYCP3Q8IZU3 236 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 GBP7Q8N8V2 638 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-224ENST00000478916 ZC3H12CQ9C0D7 883 aaKnown RBP9.99□□□□□ -0.81
SYNE1-224ENST00000478916 VCX3BQ9H321 246 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 ADAMTS12P58397 1594 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 HCLS1P14317 486 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-224ENST00000478916 SLC4A8Q2Y0W8 1093 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 SEC62Q99442 399 aaKnown RBP9.99□□□□□ -0.81
SYNE1-224ENST00000478916 ZMYM3Q14202 1370 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 MAP3K5Q99683 1374 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 IFIT1BQ5T764 474 aaKnown RBP9.99□□□□□ -0.81
SYNE1-224ENST00000478916 POTEDQ86YR6 584 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 F8W031 263 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 CASQ2O14958 399 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 RFC1P35251 1148 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 HAND2P61296 217 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 SLC39A6Q13433 755 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 RBM17Q96I25 401 aaKnown RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 GDPD2Q9HCC8 539 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 NBPF7P0C2Y1 421 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 ZNF853P0CG23 659 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 RHPN1Q8TCX5 695 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 SLC26A6Q9BXS9 759 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 GNAT2P19087 354 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 ALDH3A1P30838 453 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 PICALMQ13492 652 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 INTS8Q75QN2 995 aaKnown RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 CCDC144CPQ8IYA2 1237 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 STK32BQ9NY57 414 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 BMP15O95972 392 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 UBA7P41226 1012 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 EIF4A2Q14240 407 aaKnown RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 SUDS3Q9H7L9 328 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 TFIP11Q9UBB9 837 aaKnown RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 BUB1BO60566 1050 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 CABLES1Q8TDN4 633 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 BICD1Q96G01 975 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 ZSCAN16Q9H4T2 348 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 HSPA2P54652 639 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 ISM2Q6H9L7 571 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 USP37Q86T82 979 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 RNF168Q8IYW5 571 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 LMBR1Q8WVP7 490 aa9.98□□□□□ -0.81
SYNE1-224ENST00000478916 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.98□□□□□ -0.81
SYNE1-224ENST00000478916 ANXA1P04083 346 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 HS1BP3Q53T59 392 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 BMP2KLQ5H9B9 411 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 VEZTQ9HBM0 779 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 KRT13P13646 458 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 KRT83P78385 493 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 ANO6Q4KMQ2 910 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 TRAPPC3LQ5T215 181 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 TRIM47Q96LD4 638 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 ORC3Q9UBD5 711 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-224ENST00000478916 TTC22Q5TAA0 569 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 GIMAP6Q6P9H5 292 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 JARID2Q92833 1246 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-224ENST00000478916 TRAPPC8Q9Y2L5 1435 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 NDC80O14777 642 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 ARL1P40616 181 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-224ENST00000478916 TNNI2P48788 182 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 CCDC174Q6PII3 467 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 LMBR1LQ6UX01 489 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 CCDC186Q7Z3E2 898 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 TCHPQ9BT92 498 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 EXOC1Q9NV70 894 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 MAGEB6P1A0A0J9YX57 407 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 C11orf95C9JLR9 678 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-224ENST00000478916 IDEP14735 1019 aa9.97□□□□□ -0.81
SYNE1-224ENST00000478916 UNC13AQ9UPW8 1703 aa9.96□□□□□ -0.81
SYNE1-224ENST00000478916 KRT86O43790 486 aa9.96□□□□□ -0.81
SYNE1-224ENST00000478916 VAV2P52735 878 aa9.96□□□□□ -0.81
SYNE1-224ENST00000478916 GRM1Q13255 1194 aa9.96□□□□□ -0.81
SYNE1-224ENST00000478916 ABCC2Q92887 1545 aa9.96□□□□□ -0.81
SYNE1-224ENST00000478916 GMNNO75496 209 aa9.96□□□□□ -0.81
SYNE1-224ENST00000478916 GCP02774 474 aa9.96□□□□□ -0.81
SYNE1-224ENST00000478916 PUF60Q9UHX1 559 aaKnown RBP9.96□□□□□ -0.81
SYNE1-224ENST00000478916 TSNAXIP1Q2TAA8 658 aa9.96□□□□□ -0.81
SYNE1-224ENST00000478916 VTI1AQ96AJ9 217 aa9.96□□□□□ -0.81
SYNE1-224ENST00000478916 CEP85LQ5SZL2 805 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 GSTA5Q7RTV2 222 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 NFATC2IPQ8NCF5 419 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 SMC1BQ8NDV3 1235 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.96□□□□□ -0.82
SYNE1-224ENST00000478916 VCXQ9H320 206 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 BTG4Q9NY30 223 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 RABGAP1Q9Y3P9 1069 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 A6NNZ2 444 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 SYT1P21579 422 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 ATP5DP30049 168 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 TUBB8Q3ZCM7 444 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 IRS4O14654 1257 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-224ENST00000478916 GNPATO15228 680 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 ZBTB43O43298 467 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 NEDD9Q14511 834 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 SEPT14Q6ZU15 432 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms