RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 CCDC102BQ68D86 513 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 ZSCAN25Q6NSZ9 544 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 LPIN2Q92539 896 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 SMARCC1Q92922 1105 aaPredicted RBP13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 DDX11Q96FC9 970 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 PIH1D3Q9NQM4 214 aaKnown RBP13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 DDX60Q8IY21 1712 aaKnown RBP13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 ARAP2Q8WZ64 1704 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 GPAA1O43292 621 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 ARID4AP29374 1257 aaPredicted RBP13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 ADD2P35612 726 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 HAND2P61296 217 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 KRT85P78386 507 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 FAM173BQ6P4H8 233 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 CHST3Q7LGC8 479 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 KRT27Q7Z3Y8 459 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 LLPHQ9BRT6 129 aaKnown RBP13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 AGXT2Q9BYV1 514 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 SEC31BQ9NQW1 1179 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 NIP7Q9Y221 180 aaKnown RBP eCLIP13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 SBF2Q86WG5 1849 aa13.02□□□□□ -0.32
HLA-DMB-260ENST00000477537 FGAP02671 866 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 UQCRFS1P1P0C7P4 283 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 SLC5A1P13866 664 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 FGFR2P21802 821 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 FAM184AQ8NB25 1140 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 MPHOSPH8Q99549 860 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 NAP1L2Q9ULW6 460 aaPredicted RBP13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 IDH1O75874 414 aaKnown RBP13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 NTSR2O95665 410 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 CCT2P78371 535 aaKnown RBP13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 CCDC152Q4G0S7 254 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 SLC9C2Q5TAH2 1124 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 RNF214Q8ND24 703 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 SMARCC2Q8TAQ2 1214 aa13.01□□□□□ -0.33
HLA-DMB-260ENST00000477537 LAMB2P55268 1798 aa13□□□□□ -0.33
HLA-DMB-260ENST00000477537 COL5A3P25940 1745 aaPredicted RBP13□□□□□ -0.33
HLA-DMB-260ENST00000477537 H3BQV1 296 aa13□□□□□ -0.33
HLA-DMB-260ENST00000477537 LETM1O95202 739 aaPredicted RBP13□□□□□ -0.33
HLA-DMB-260ENST00000477537 IFFO2Q5TF58 517 aa13□□□□□ -0.33
HLA-DMB-260ENST00000477537 TTC6Q86TZ1 520 aa13□□□□□ -0.33
HLA-DMB-260ENST00000477537 NSUN7Q8NE18 718 aaKnown RBP13□□□□□ -0.33
HLA-DMB-260ENST00000477537 CTDNEP1O95476 244 aa13□□□□□ -0.33
HLA-DMB-260ENST00000477537 RESTQ13127 1097 aa13□□□□□ -0.33
HLA-DMB-260ENST00000477537 NCOA5Q9HCD5 579 aaKnown RBP13□□□□□ -0.33
HLA-DMB-260ENST00000477537 ZNF652Q9Y2D9 606 aa13□□□□□ -0.33
HLA-DMB-260ENST00000477537 BCORQ6W2J9 1755 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 ELP1O95163 1332 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 ZNF532Q9HCE3 1301 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 PTPDC1A2A3K4 754 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 SNAP23O00161 211 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 ZNF213O14771 459 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 PDE6AP16499 860 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 PDIA3P30101 505 aaKnown RBP12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 IGHMBP2P38935 993 aaKnown RBP12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 FOSBP53539 338 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 UBE3CQ15386 1083 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 SPATA5Q8NB90 893 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 LINC00116Q8NCU8 138 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 ZNF274Q96GC6 653 aaPredicted RBP12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 GPHNQ9NQX3 736 aaPredicted RBP12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 TFIP11Q9UBB9 837 aaKnown RBP12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 WWC3Q9ULE0 1092 aa12.99□□□□□ -0.33
HLA-DMB-260ENST00000477537 ESPNB1AK53 854 aa12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 MCM5P33992 734 aa12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 HMGN5P82970 282 aaKnown RBP12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 MB21D2Q8IYB1 491 aaPredicted RBP12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 NCOA7Q8NI08 942 aa12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 SPATA32Q96LK8 384 aa12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 SCAND2PQ9GZW5 306 aaPredicted RBP12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 BTAF1O14981 1849 aa12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 RTL9Q8NET4 1388 aa12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 PRC1O43663 620 aa12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 RALYLQ86SE5 291 aaKnown RBP12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 FBXL16Q8N461 479 aa12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 KIF3AQ9Y496 699 aa12.98□□□□□ -0.33
HLA-DMB-260ENST00000477537 TCRBV5S4A2TA0A5A2 114 aa12.97□□□□□ -0.33
HLA-DMB-260ENST00000477537 APPP05067 770 aa12.97□□□□□ -0.33
HLA-DMB-260ENST00000477537 RASGRF1Q13972 1273 aa12.97□□□□□ -0.33
HLA-DMB-260ENST00000477537 LEO1Q8WVC0 666 aaPredicted RBP12.97□□□□□ -0.33
HLA-DMB-260ENST00000477537 PDLIM2Q96JY6 352 aa12.97□□□□□ -0.33
HLA-DMB-260ENST00000477537 ZSCAN16Q9H4T2 348 aaPredicted RBP12.97□□□□□ -0.33
HLA-DMB-260ENST00000477537 NHSQ6T4R5 1651 aa12.97□□□□□ -0.33
HLA-DMB-260ENST00000477537 DOCK2Q92608 1830 aa12.97□□□□□ -0.33
HLA-DMB-260ENST00000477537 MYH15Q9Y2K3 1946 aa12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 ZNF831Q5JPB2 1677 aa12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 PPFIA3O75145 1194 aa12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 TRIM37O94972 964 aa12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 KCNQ4P56696 695 aa12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 EVCP57679 992 aa12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 ANTXR2P58335 489 aa12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 NAA16Q6N069 864 aaPredicted RBP12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 GIMAP6Q6P9H5 292 aa12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 CHMP4CQ96CF2 233 aa12.96□□□□□ -0.33
HLA-DMB-260ENST00000477537 SALL1Q9NSC2 1324 aa12.96□□□□□ -0.34
HLA-DMB-260ENST00000477537 GOLGA6L4A6NEF3 574 aa12.96□□□□□ -0.34
HLA-DMB-260ENST00000477537 BCAMP50895 628 aa12.96□□□□□ -0.34
HLA-DMB-260ENST00000477537 CHRNDQ07001 517 aa12.96□□□□□ -0.34
HLA-DMB-260ENST00000477537 MAP3K12Q12852 859 aa12.96□□□□□ -0.34
HLA-DMB-260ENST00000477537 CLEC4GQ6UXB4 293 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms