RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 ZNF576Q9H609 170 aa7.89□□□□□ -1.15
PRPF40A-208ENST00000472760 SOX13Q9UN79 622 aa7.89□□□□□ -1.15
PRPF40A-208ENST00000472760 HDLBPQ00341 1268 aaKnown RBP7.88□□□□□ -1.15
PRPF40A-208ENST00000472760 CCDC85BQ15834 202 aaPredicted RBP7.88□□□□□ -1.15
PRPF40A-208ENST00000472760 ADAMTSL4Q6UY14 1074 aa7.88□□□□□ -1.15
PRPF40A-208ENST00000472760 TPTE2Q6XPS3 522 aa7.88□□□□□ -1.15
PRPF40A-208ENST00000472760 WHAMMQ8TF30 809 aa7.88□□□□□ -1.15
PRPF40A-208ENST00000472760 ENAMQ9NRM1 1142 aa7.88□□□□□ -1.15
PRPF40A-208ENST00000472760 GPN3Q9UHW5 284 aaPredicted RBP7.88□□□□□ -1.15
PRPF40A-208ENST00000472760 FBXO24O75426 580 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 CDC25BP30305 580 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 AFF1P51825 1210 aaKnown RBP7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 PCDH1Q08174 1060 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 GRIK5Q16478 980 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 C8orf86Q6ZUL3 223 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 HS2ST1Q7LGA3 356 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 VN1R5Q7Z5H4 357 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 SVOPQ8N4V2 548 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 NEDD1Q8NHV4 660 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 ANKRD24Q8TF21 1146 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 GGT7Q9UJ14 662 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 PPME1Q9Y570 386 aa7.87□□□□□ -1.15
PRPF40A-208ENST00000472760 ERCC5P28715 1186 aaPredicted RBP7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 ZNF157P51786 506 aaPredicted RBP7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 IKBKEQ14164 716 aa7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 FAM117BQ6P1L5 589 aa7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 SV2BQ7L1I2 683 aa7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 NT5DC4Q86YG4 428 aa7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 WFDC8Q8IUA0 241 aa7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 NOC4LQ9BVI4 516 aaKnown RBP7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 RRAGCQ9HB90 399 aa7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 SEC31BQ9NQW1 1179 aa7.86□□□□□ -1.15
PRPF40A-208ENST00000472760 H3BRJ5 948 aa7.85□□□□□ -1.15
PRPF40A-208ENST00000472760 EPHA1P21709 976 aa7.85□□□□□ -1.15
PRPF40A-208ENST00000472760 PPP2R3AQ06190 1150 aa7.85□□□□□ -1.15
PRPF40A-208ENST00000472760 FAAP100Q0VG06 881 aa7.85□□□□□ -1.15
PRPF40A-208ENST00000472760 ZNF385CQ66K41 422 aaPredicted RBP7.85□□□□□ -1.15
PRPF40A-208ENST00000472760 MSL1Q68DK7 614 aa7.85□□□□□ -1.15
PRPF40A-208ENST00000472760 METTL16Q86W50 562 aaKnown RBP7.85□□□□□ -1.15
PRPF40A-208ENST00000472760 PRDM6Q9NQX0 595 aa7.85□□□□□ -1.15
PRPF40A-208ENST00000472760 TMEM39AQ9NV64 488 aa7.85□□□□□ -1.15
PRPF40A-208ENST00000472760 LINC01387J3KSC0 135 aa7.84□□□□□ -1.15
PRPF40A-208ENST00000472760 ESRRAP11474 423 aaPredicted RBP7.84□□□□□ -1.15
PRPF40A-208ENST00000472760 RLBP1P12271 317 aa7.84□□□□□ -1.15
PRPF40A-208ENST00000472760 ZNF423Q2M1K9 1284 aa7.84□□□□□ -1.15
PRPF40A-208ENST00000472760 RELL1Q8IUW5 271 aa7.84□□□□□ -1.15
PRPF40A-208ENST00000472760 DDX54Q8TDD1 881 aaKnown RBP7.84□□□□□ -1.15
PRPF40A-208ENST00000472760 NECAB3Q96P71 396 aaPredicted RBP7.84□□□□□ -1.15
PRPF40A-208ENST00000472760 B3GALT4O96024 378 aa7.83□□□□□ -1.16
PRPF40A-208ENST00000472760 BAG6P46379 1132 aa7.83□□□□□ -1.16
PRPF40A-208ENST00000472760 ARL4DP49703 201 aa7.83□□□□□ -1.16
PRPF40A-208ENST00000472760 MAP3K11Q16584 847 aa7.83□□□□□ -1.16
PRPF40A-208ENST00000472760 LCE2AQ5TA79 106 aaPredicted RBP7.83□□□□□ -1.16
PRPF40A-208ENST00000472760 TXNDC11Q6PKC3 985 aa7.83□□□□□ -1.16
PRPF40A-208ENST00000472760 SLC7A3Q8WY07 619 aa7.83□□□□□ -1.16
PRPF40A-208ENST00000472760 SOX1O00570 391 aaPredicted RBP7.82□□□□□ -1.16
PRPF40A-208ENST00000472760 CELA3AP09093 270 aa7.82□□□□□ -1.16
PRPF40A-208ENST00000472760 PWP1Q13610 501 aa7.82□□□□□ -1.16
PRPF40A-208ENST00000472760 USP48Q86UV5 1035 aa7.82□□□□□ -1.16
PRPF40A-208ENST00000472760 DMRTC2Q8IXT2 367 aaPredicted RBP7.82□□□□□ -1.16
PRPF40A-208ENST00000472760 TRIM56Q9BRZ2 755 aaKnown RBP7.82□□□□□ -1.16
PRPF40A-208ENST00000472760 SAMM50Q9Y512 469 aa7.82□□□□□ -1.16
PRPF40A-208ENST00000472760 ENC1O14682 589 aa7.81□□□□□ -1.16
PRPF40A-208ENST00000472760 NID1P14543 1247 aa7.81□□□□□ -1.16
PRPF40A-208ENST00000472760 DGKGP49619 791 aa7.81□□□□□ -1.16
PRPF40A-208ENST00000472760 PIP4K2BP78356 416 aa7.81□□□□□ -1.16
PRPF40A-208ENST00000472760 TRAPPC3LQ5T215 181 aa7.81□□□□□ -1.16
PRPF40A-208ENST00000472760 ERMP1Q7Z2K6 904 aa7.81□□□□□ -1.16
PRPF40A-208ENST00000472760 WNT8BQ93098 351 aa7.81□□□□□ -1.16
PRPF40A-208ENST00000472760 RSRP1Q9BUV0 290 aa7.81□□□□□ -1.16
PRPF40A-208ENST00000472760 FSCN2O14926 492 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 WIPF1O43516 503 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 GBP2P32456 591 aaPredicted RBP7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 GSTM4Q03013 218 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 C19orf57Q0VDD7 668 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 ZNF394Q53GI3 561 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 TTBK2Q6IQ55 1244 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 ZNF654Q8IZM8 581 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 TGIF2Q9GZN2 237 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 CCSER2Q9H7U1 834 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 OSGEPQ9NPF4 335 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 COPRSQ9NQ92 184 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 KBTBD4Q9NVX7 518 aa7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.8□□□□□ -1.16
PRPF40A-208ENST00000472760 MINDY4BA8MYZ0 360 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 F6X3S4 739 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 EIF4EBP3O60516 100 aaPredicted RBP7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 PAGE1O75459 146 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 ARHGEF15O94989 841 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 LMNB1P20700 586 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 NME2P22392 152 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 LIG3P49916 1009 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 RAD51AP2Q09MP3 1159 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 COL9A3Q14050 684 aaPredicted RBP7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 HGSNATQ68CP4 663 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 CARD10Q9BWT7 1032 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 SOX17Q9H6I2 414 aaPredicted RBP7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 DDX41Q9UJV9 622 aaKnown RBP7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 PCDHGB7Q9Y5F8 929 aa7.79□□□□□ -1.16
PRPF40A-208ENST00000472760 HOXB4P17483 251 aaPredicted RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms