RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ZNF804AQ7Z570 1209 aa19.79■□□□□ 0.76
CCDC88B-205ENST00000472524 UBE2Q2LH0YL09 131 aa19.78■□□□□ 0.76
CCDC88B-205ENST00000472524 SASH1O94885 1247 aa19.78■□□□□ 0.76
CCDC88B-205ENST00000472524 C15orf52Q6ZUT6 534 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-205ENST00000472524 KIAA0825Q8IV33 1275 aa19.78■□□□□ 0.76
CCDC88B-205ENST00000472524 PUS3Q9BZE2 481 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-205ENST00000472524 WNT10BO00744 389 aa19.77■□□□□ 0.76
CCDC88B-205ENST00000472524 ANKRD44Q8N8A2 993 aa19.77■□□□□ 0.76
CCDC88B-205ENST00000472524 CASP8AP2Q9UKL3 1982 aa19.76■□□□□ 0.75
CCDC88B-205ENST00000472524 RABL6Q3YEC7 729 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-205ENST00000472524 USP44Q9H0E7 712 aa19.76■□□□□ 0.75
CCDC88B-205ENST00000472524 HDAC9Q9UKV0 1011 aa19.76■□□□□ 0.75
CCDC88B-205ENST00000472524 JAG2Q9Y219 1238 aa19.76■□□□□ 0.75
CCDC88B-205ENST00000472524 PAPPA2Q9BXP8 1791 aa19.75■□□□□ 0.75
CCDC88B-205ENST00000472524 AKAP11Q9UKA4 1901 aa19.75■□□□□ 0.75
CCDC88B-205ENST00000472524 CT47B1P0C2W7 299 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-205ENST00000472524 NOB1Q9ULX3 412 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-205ENST00000472524 ARAP2Q8WZ64 1704 aa19.75■□□□□ 0.75
CCDC88B-205ENST00000472524 MYH13Q9UKX3 1938 aa19.74■□□□□ 0.75
CCDC88B-205ENST00000472524 IL1R1P14778 569 aa19.74■□□□□ 0.75
CCDC88B-205ENST00000472524 TTLL12Q14166 644 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-205ENST00000472524 CERS5Q8N5B7 392 aa19.74■□□□□ 0.75
CCDC88B-205ENST00000472524 F8W031 263 aaPredicted RBP19.73■□□□□ 0.75
CCDC88B-205ENST00000472524 UBE4AQ14139 1066 aa19.73■□□□□ 0.75
CCDC88B-205ENST00000472524 LRRC24Q50LG9 513 aa19.73■□□□□ 0.75
CCDC88B-205ENST00000472524 REM2Q8IYK8 340 aaPredicted RBP19.73■□□□□ 0.75
CCDC88B-205ENST00000472524 KLHDC4Q8TBB5 520 aa19.73■□□□□ 0.75
CCDC88B-205ENST00000472524 RIPOR2Q9Y4F9 1068 aa19.73■□□□□ 0.75
CCDC88B-205ENST00000472524 MROH5Q6ZUA9 1318 aa19.73■□□□□ 0.75
CCDC88B-205ENST00000472524 GYG1P46976 350 aa19.72■□□□□ 0.75
CCDC88B-205ENST00000472524 MMP14P50281 582 aa19.72■□□□□ 0.75
CCDC88B-205ENST00000472524 METTL24Q5JXM2 366 aa19.72■□□□□ 0.75
CCDC88B-205ENST00000472524 MKRN3Q13064 507 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-205ENST00000472524 ZBED3Q96IU2 234 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-205ENST00000472524 TBC1D8O95759 1140 aa19.7■□□□□ 0.74
CCDC88B-205ENST00000472524 HIBADHP31937 336 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-205ENST00000472524 NF2P35240 595 aa19.7■□□□□ 0.74
CCDC88B-205ENST00000472524 RARSP54136 660 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-205ENST00000472524 PRKG1Q13976 671 aa19.7■□□□□ 0.74
CCDC88B-205ENST00000472524 DIEXFQ68CQ4 756 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-205ENST00000472524 CTU1Q7Z7A3 348 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-205ENST00000472524 MIER1Q8N108 512 aa19.7■□□□□ 0.74
CCDC88B-205ENST00000472524 API5Q9BZZ5 524 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-205ENST00000472524 UBTFL1P0CB47 393 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-205ENST00000472524 SOX10P56693 466 aa19.69■□□□□ 0.74
CCDC88B-205ENST00000472524 FKBP1AP62942 108 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-205ENST00000472524 PTPN12Q05209 780 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-205ENST00000472524 DLGAP5Q15398 846 aa19.69■□□□□ 0.74
CCDC88B-205ENST00000472524 APOBEC3FQ8IUX4 373 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-205ENST00000472524 FAM84BQ96KN1 310 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-205ENST00000472524 PCDHAC2Q9Y5I4 1007 aa19.69■□□□□ 0.74
CCDC88B-205ENST00000472524 VPS37DQ86XT2 251 aa19.68■□□□□ 0.74
CCDC88B-205ENST00000472524 TDRD7Q8NHU6 1098 aaKnown RBP19.68■□□□□ 0.74
CCDC88B-205ENST00000472524 FZD1Q9UP38 647 aa19.68■□□□□ 0.74
CCDC88B-205ENST00000472524 FAM205AQ6ZU69 1335 aa19.68■□□□□ 0.74
CCDC88B-205ENST00000472524 TM4SF4P48230 202 aa19.67■□□□□ 0.74
CCDC88B-205ENST00000472524 CFAP100Q494V2 611 aa19.67■□□□□ 0.74
CCDC88B-205ENST00000472524 ARMC9Q7Z3E5 817 aa19.67■□□□□ 0.74
CCDC88B-205ENST00000472524 ZNF296Q8WUU4 475 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-205ENST00000472524 IQSEC3Q9UPP2 1182 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-205ENST00000472524 KIF16BQ96L93 1317 aa19.67■□□□□ 0.74
CCDC88B-205ENST00000472524 PDE8BO95263 885 aa19.66■□□□□ 0.74
CCDC88B-205ENST00000472524 RFX5P48382 616 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-205ENST00000472524 RBM5P52756 815 aaKnown RBP eCLIP19.66■□□□□ 0.74
CCDC88B-205ENST00000472524 MFSD14BQ5SR56 506 aa19.66■□□□□ 0.74
CCDC88B-205ENST00000472524 VGLL2Q8N8G2 317 aa19.66■□□□□ 0.74
CCDC88B-205ENST00000472524 MTMR14Q8NCE2 650 aa19.66■□□□□ 0.74
CCDC88B-205ENST00000472524 DEFB129Q9H1M3 183 aa19.66■□□□□ 0.74
CCDC88B-205ENST00000472524 CLRN2A0PK11 232 aa19.65■□□□□ 0.74
CCDC88B-205ENST00000472524 HNRNPUQ00839 825 aaKnown RBP eCLIP19.65■□□□□ 0.74
CCDC88B-205ENST00000472524 CHAF1AQ13111 956 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-205ENST00000472524 CAVIN4Q5BKX8 364 aa19.65■□□□□ 0.74
CCDC88B-205ENST00000472524 LDLRAD1Q5T700 205 aa19.65■□□□□ 0.74
CCDC88B-205ENST00000472524 ANGEL1Q9UNK9 670 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-205ENST00000472524 SPDYE2BA6NHP3 402 aa19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 EYA2O00167 538 aa19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 FRAT2O75474 233 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 SLC34A2O95436 690 aa19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 SPDYE6P0CI01 402 aa19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 FBXO33Q7Z6M2 555 aa19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 MEIS3Q99687 375 aa19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 SIL1Q9H173 461 aa19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 TTF2Q9UNY4 1162 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 HPS5Q9UPZ3 1129 aa19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 LRRFIP2Q9Y608 721 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 AOX1Q06278 1338 aa19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 COL1A1P02452 1464 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-205ENST00000472524 MYO1BO43795 1136 aa19.63■□□□□ 0.73
CCDC88B-205ENST00000472524 PUM3Q15397 648 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-205ENST00000472524 SPRYD7Q5W111 196 aa19.63■□□□□ 0.73
CCDC88B-205ENST00000472524 PRMT6Q96LA8 375 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-205ENST00000472524 R3HDMLQ9H3Y0 253 aa19.63■□□□□ 0.73
CCDC88B-205ENST00000472524 VEZTQ9HBM0 779 aa19.63■□□□□ 0.73
CCDC88B-205ENST00000472524 TNRC18O15417 2968 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-205ENST00000472524 SSC5DA1L4H1 1573 aa19.62■□□□□ 0.73
CCDC88B-205ENST00000472524 GPR25O00155 361 aa19.62■□□□□ 0.73
CCDC88B-205ENST00000472524 IFIT1P09914 478 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-205ENST00000472524 BCAMP50895 628 aa19.62■□□□□ 0.73
CCDC88B-205ENST00000472524 SREBF2Q12772 1141 aa19.62■□□□□ 0.73
CCDC88B-205ENST00000472524 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms