RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CPLX3Q8WVH0 158 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 APBB1IPQ7Z5R6 666 aaPredicted RBP14.97□□□□□ -0.01
COL6A3-209ENST00000472056 INSRP06213 1382 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 POLR3DP05423 398 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-209ENST00000472056 CCDC61Q9Y6R9 512 aa14.96□□□□□ -0.01
COL6A3-209ENST00000472056 VPS52Q8N1B4 723 aa14.96□□□□□ -0.01
COL6A3-209ENST00000472056 INF2Q27J81 1249 aa14.96□□□□□ -0.01
COL6A3-209ENST00000472056 CEP85LQ5SZL2 805 aa14.96□□□□□ -0.01
COL6A3-209ENST00000472056 GIMAP6Q6P9H5 292 aa14.96□□□□□ -0.01
COL6A3-209ENST00000472056 BICD1Q96G01 975 aa14.96□□□□□ -0.01
COL6A3-209ENST00000472056 ARHGAP6O43182 974 aa14.96□□□□□ -0.01
COL6A3-209ENST00000472056 EVCP57679 992 aa14.96□□□□□ -0.01
COL6A3-209ENST00000472056 PAK2Q13177 524 aa14.96□□□□□ -0.01
COL6A3-209ENST00000472056 SPTLC2O15270 562 aa14.96□□□□□ -0.02
COL6A3-209ENST00000472056 ATP6V0A2Q9Y487 856 aa14.96□□□□□ -0.02
COL6A3-209ENST00000472056 PPP1R7Q15435 360 aa14.96□□□□□ -0.02
COL6A3-209ENST00000472056 ESR2Q92731 530 aa14.96□□□□□ -0.02
COL6A3-209ENST00000472056 ATP2A3Q93084 1043 aa14.96□□□□□ -0.02
COL6A3-209ENST00000472056 GCC2Q8IWJ2 1684 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 CCDC144CPQ8IYA2 1237 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 DRC1Q96MC2 740 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 TACO1Q9BSH4 297 aaKnown RBP14.95□□□□□ -0.02
COL6A3-209ENST00000472056 GLT8D2Q9H1C3 349 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 ZBTB43O43298 467 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 ATP8B1O43520 1251 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 AP1ARQ63HQ0 302 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 IL1RAPL2Q9NP60 686 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 CETN3O15182 167 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 APBA1Q02410 837 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 SELENOSQ9BQE4 189 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 MGEA5O60502 916 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 MYL5Q02045 173 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 HAUS8Q9BT25 410 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 RAB17Q9H0T7 212 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 KAT14Q9H8E8 782 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 B4DLN1 442 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 I3L4J1 428 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 MRPL12P52815 198 aaKnown RBP14.95□□□□□ -0.02
COL6A3-209ENST00000472056 THEMISQ8N1K5 641 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-209ENST00000472056 IQUBQ8NA54 791 aa14.95□□□□□ -0.02
COL6A3-209ENST00000472056 GOLGA4Q13439 2230 aaKnown RBP14.94□□□□□ -0.02
COL6A3-209ENST00000472056 C8orf74Q6P047 294 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 UQCRFS1P1P0C7P4 283 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 UBXN1Q04323 297 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 RILPL1Q5EBL4 403 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 TMTC1Q8IUR5 882 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 TBC1D31Q96DN5 1066 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 GBP5Q96PP8 586 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 TRIM75PA6NK02 468 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 BIN1O00499 593 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 RLBP1P12271 317 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 PRIM1P49642 420 aaKnown RBP14.94□□□□□ -0.02
COL6A3-209ENST00000472056 DNA2P51530 1060 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 HS2ST1Q7LGA3 356 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 AOPEPQ8N6M6 819 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 LRCH2Q5VUJ6 765 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 GOLGA5Q8TBA6 731 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 NCAPGQ9BPX3 1015 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 SEPT10Q9P0V9 454 aa14.94□□□□□ -0.02
COL6A3-209ENST00000472056 CERS3Q8IU89 383 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 CCDC63Q8NA47 563 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 CCDC51Q96ER9 411 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 BOLA2Q9H3K6 86 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 AOX1Q06278 1338 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 MYL6BP14649 208 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 GNA11P29992 359 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 MAIP1Q8WWC4 291 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 WTAPQ15007 396 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 CRACR2BQ8N4Y2 399 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-209ENST00000472056 TRIM35Q9UPQ4 493 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 MINDY4BA8MYZ0 360 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 CFAP70Q5T0N1 1121 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 RRAGBQ5VZM2 374 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 CCDC82Q8N4S0 544 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 ZC3H15Q8WU90 426 aaKnown RBP14.93□□□□□ -0.02
COL6A3-209ENST00000472056 SLC12A5Q9H2X9 1139 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 ZSWIM4Q9H7M6 989 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 FAM160A1Q05DH4 1040 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 CFAP221Q4G0U5 840 aa14.93□□□□□ -0.02
COL6A3-209ENST00000472056 RANBP6O60518 1105 aaKnown RBP14.92□□□□□ -0.02
COL6A3-209ENST00000472056 RAB11FIP4Q86YS3 637 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 ZSCAN29Q8IWY8 852 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-209ENST00000472056 NOX5Q96PH1 765 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 SPATS2LQ9NUQ6 558 aaKnown RBP14.92□□□□□ -0.02
COL6A3-209ENST00000472056 DACT1Q9NYF0 836 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 ZMYM4Q5VZL5 1548 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 CDC5LQ99459 802 aaKnown RBP14.92□□□□□ -0.02
COL6A3-209ENST00000472056 HLA-DOAP06340 250 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 RTN1Q16799 776 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 P3H4Q92791 437 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 ABCF2Q9UG63 623 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 IDEP14735 1019 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 CCDC122Q5T0U0 273 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 HIP1RO75146 1068 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 PPP2R5BQ15173 497 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 SDCCAG8Q86SQ7 713 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-209ENST00000472056 CCDC84Q86UT8 332 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-209ENST00000472056 UBLCP1Q8WVY7 318 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-209ENST00000472056 SERPINA10Q9UK55 444 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 RBM5P52756 815 aaKnown RBP eCLIP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms