RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 R3HDMLQ9H3Y0 253 aa10.26□□□□□ -0.77
USP48-207ENST00000471752 BICC1Q9H694 974 aaKnown RBP10.26□□□□□ -0.77
USP48-207ENST00000471752 RNF186Q9NXI6 227 aa10.26□□□□□ -0.77
USP48-207ENST00000471752 C9orf78Q9NZ63 289 aaPredicted RBP10.26□□□□□ -0.77
USP48-207ENST00000471752 KCNJ4P48050 445 aa10.25□□□□□ -0.77
USP48-207ENST00000471752 BRPF1P55201 1214 aaPredicted RBP10.25□□□□□ -0.77
USP48-207ENST00000471752 PTPN12Q05209 780 aaKnown RBP10.25□□□□□ -0.77
USP48-207ENST00000471752 LDHAL6AQ6ZMR3 332 aa10.25□□□□□ -0.77
USP48-207ENST00000471752 RASAL3Q86YV0 1011 aa10.25□□□□□ -0.77
USP48-207ENST00000471752 CDAN1Q8IWY9 1227 aa10.25□□□□□ -0.77
USP48-207ENST00000471752 FAM84BQ96KN1 310 aaPredicted RBP10.25□□□□□ -0.77
USP48-207ENST00000471752 PRMT6Q96LA8 375 aaPredicted RBP10.25□□□□□ -0.77
USP48-207ENST00000471752 MCOLN1Q9GZU1 580 aa10.25□□□□□ -0.77
USP48-207ENST00000471752 USP44Q9H0E7 712 aa10.25□□□□□ -0.77
USP48-207ENST00000471752 IQSEC3Q9UPP2 1182 aaPredicted RBP10.25□□□□□ -0.77
USP48-207ENST00000471752 RIPOR2Q9Y4F9 1068 aa10.25□□□□□ -0.77
USP48-207ENST00000471752 ZNF609O15014 1411 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 ZNF646O15015 1829 aaPredicted RBP10.24□□□□□ -0.77
USP48-207ENST00000471752 CLRN2A0PK11 232 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 ALDH1L1O75891 902 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 SLC10A3P09131 477 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 IL1R1P14778 569 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 NOGQ13253 232 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 C15orf52Q6ZUT6 534 aaKnown RBP10.24□□□□□ -0.77
USP48-207ENST00000471752 TRMT2AQ8IZ69 625 aaKnown RBP10.24□□□□□ -0.77
USP48-207ENST00000471752 BEGAINQ9BUH8 593 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 CNNM1Q9NRU3 951 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 TNNQ9UQP3 1299 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 THSD7BQ9C0I4 1608 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 CASP8AP2Q9UKL3 1982 aa10.24□□□□□ -0.77
USP48-207ENST00000471752 CCDC85CA6NKD9 419 aa10.23□□□□□ -0.77
USP48-207ENST00000471752 CCDC57Q2TAC2 916 aa10.23□□□□□ -0.77
USP48-207ENST00000471752 CFAP100Q494V2 611 aa10.23□□□□□ -0.77
USP48-207ENST00000471752 CLMNQ96JQ2 1002 aa10.23□□□□□ -0.77
USP48-207ENST00000471752 UTYO14607 1347 aa10.23□□□□□ -0.77
USP48-207ENST00000471752 TBC1D8O95759 1140 aa10.22□□□□□ -0.77
USP48-207ENST00000471752 RFX5P48382 616 aaPredicted RBP10.22□□□□□ -0.77
USP48-207ENST00000471752 BCAMP50895 628 aa10.22□□□□□ -0.77
USP48-207ENST00000471752 OGFOD1Q8N543 542 aa10.22□□□□□ -0.77
USP48-207ENST00000471752 TDRD7Q8NHU6 1098 aaKnown RBP10.22□□□□□ -0.77
USP48-207ENST00000471752 CCDC102AQ96A19 550 aa10.22□□□□□ -0.77
USP48-207ENST00000471752 HTTP42858 3142 aa10.22□□□□□ -0.77
USP48-207ENST00000471752 E9PSI1 815 aa10.21□□□□□ -0.77
USP48-207ENST00000471752 DGKZQ13574 1117 aa10.21□□□□□ -0.77
USP48-207ENST00000471752 TTLL12Q14166 644 aaPredicted RBP10.21□□□□□ -0.77
USP48-207ENST00000471752 RABL6Q3YEC7 729 aaPredicted RBP10.21□□□□□ -0.77
USP48-207ENST00000471752 TAF7LQ5H9L4 462 aa10.21□□□□□ -0.77
USP48-207ENST00000471752 LDLRAD1Q5T700 205 aa10.21□□□□□ -0.77
USP48-207ENST00000471752 NBPF12Q5TAG4 269 aaPredicted RBP10.21□□□□□ -0.77
USP48-207ENST00000471752 FBXO33Q7Z6M2 555 aa10.21□□□□□ -0.77
USP48-207ENST00000471752 VGLL2Q8N8G2 317 aa10.21□□□□□ -0.77
USP48-207ENST00000471752 DEFB129Q9H1M3 183 aa10.21□□□□□ -0.77
USP48-207ENST00000471752 NOB1Q9ULX3 412 aaKnown RBP10.21□□□□□ -0.77
USP48-207ENST00000471752 PITPNM2Q9BZ72 1349 aa10.21□□□□□ -0.78
USP48-207ENST00000471752 SSC5DA1L4H1 1573 aa10.21□□□□□ -0.78
USP48-207ENST00000471752 MYH3P11055 1940 aa10.21□□□□□ -0.78
USP48-207ENST00000471752 SPDYE2BA6NHP3 402 aa10.2□□□□□ -0.78
USP48-207ENST00000471752 SPDYE6P0CI01 402 aa10.2□□□□□ -0.78
USP48-207ENST00000471752 ATXN8OSP0DMR3 200 aa10.2□□□□□ -0.78
USP48-207ENST00000471752 HIBADHP31937 336 aaKnown RBP10.2□□□□□ -0.78
USP48-207ENST00000471752 GJA5P36382 358 aa10.2□□□□□ -0.78
USP48-207ENST00000471752 CACNB3P54284 484 aa10.2□□□□□ -0.78
USP48-207ENST00000471752 DLGAP5Q15398 846 aa10.2□□□□□ -0.78
USP48-207ENST00000471752 ZNF804AQ7Z570 1209 aa10.2□□□□□ -0.78
USP48-207ENST00000471752 ANGEL1Q9UNK9 670 aaKnown RBP10.2□□□□□ -0.78
USP48-207ENST00000471752 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.2□□□□□ -0.78
USP48-207ENST00000471752 PSME4Q14997 1843 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 FAM205AQ6ZU69 1335 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 MYO3BQ8WXR4 1341 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 USP2O75604 605 aaPredicted RBP10.19□□□□□ -0.78
USP48-207ENST00000471752 CAP1Q01518 475 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 CHAF1AQ13111 956 aaPredicted RBP10.19□□□□□ -0.78
USP48-207ENST00000471752 UBE4AQ14139 1066 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 MFSD14BQ5SR56 506 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 CHRDL2Q6WN34 429 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 ATG9AQ7Z3C6 839 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 MTMR14Q8NCE2 650 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 TDRD3Q9H7E2 651 aaKnown RBP10.19□□□□□ -0.78
USP48-207ENST00000471752 VEZTQ9HBM0 779 aa10.19□□□□□ -0.78
USP48-207ENST00000471752 PA2G4Q9UQ80 394 aaKnown RBP10.19□□□□□ -0.78
USP48-207ENST00000471752 CENPFP49454 3210 aa10.18□□□□□ -0.78
USP48-207ENST00000471752 ZBTB22O15209 634 aa10.18□□□□□ -0.78
USP48-207ENST00000471752 FGFR2P21802 821 aa10.18□□□□□ -0.78
USP48-207ENST00000471752 RBM5P52756 815 aaKnown RBP eCLIP10.18□□□□□ -0.78
USP48-207ENST00000471752 RASA3Q14644 834 aa10.18□□□□□ -0.78
USP48-207ENST00000471752 METTL24Q5JXM2 366 aa10.18□□□□□ -0.78
USP48-207ENST00000471752 TEPSINQ96N21 525 aa10.18□□□□□ -0.78
USP48-207ENST00000471752 SMC4Q9NTJ3 1288 aa10.18□□□□□ -0.78
USP48-207ENST00000471752 ZNF70Q9UC06 446 aaPredicted RBP10.18□□□□□ -0.78
USP48-207ENST00000471752 HDAC9Q9UKV0 1011 aa10.18□□□□□ -0.78
USP48-207ENST00000471752 TTF2Q9UNY4 1162 aaKnown RBP10.18□□□□□ -0.78
USP48-207ENST00000471752 TCP10L2B9ZVM9 353 aa10.17□□□□□ -0.78
USP48-207ENST00000471752 CA12O43570 354 aa10.17□□□□□ -0.78
USP48-207ENST00000471752 PDE8BO95263 885 aa10.17□□□□□ -0.78
USP48-207ENST00000471752 TM4SF4P48230 202 aa10.17□□□□□ -0.78
USP48-207ENST00000471752 FKBP1BP68106 108 aa10.17□□□□□ -0.78
USP48-207ENST00000471752 SPRYD7Q5W111 196 aa10.17□□□□□ -0.78
USP48-207ENST00000471752 DZIP1LQ8IYY4 767 aaKnown RBP10.17□□□□□ -0.78
USP48-207ENST00000471752 TMEM39BQ9GZU3 492 aa10.17□□□□□ -0.78
USP48-207ENST00000471752 SIL1Q9H173 461 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms