RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 RPAP1Q9BWH6 1393 aaPredicted RBP11.26□□□□□ -0.61
VPS52-216ENST00000471309 LAMA4Q16363 1823 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 M0R2C6 588 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 IDH1O75874 414 aaKnown RBP11.25□□□□□ -0.61
VPS52-216ENST00000471309 SRGNP10124 158 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 ZKSCAN1P17029 563 aaPredicted RBP11.25□□□□□ -0.61
VPS52-216ENST00000471309 MCM2P49736 904 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 MAP3K12Q12852 859 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 CREB3L3Q68CJ9 461 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 MSL1Q68DK7 614 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 PRPF40BQ6NWY9 871 aaKnown RBP11.25□□□□□ -0.61
VPS52-216ENST00000471309 CCDC129Q6ZRS4 1044 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 TM6SF1Q9BZW5 370 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 PODXL2Q9NZ53 605 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 DENND2AQ9ULE3 1009 aa11.25□□□□□ -0.61
VPS52-216ENST00000471309 CACNA1SQ13698 1873 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 TCRBV5S4A2TA0A5A2 114 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 WTIPA6NIX2 430 aaPredicted RBP11.24□□□□□ -0.61
VPS52-216ENST00000471309 PPEF1O14829 653 aaPredicted RBP11.24□□□□□ -0.61
VPS52-216ENST00000471309 SLC27A2O14975 620 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 PDE6AP16499 860 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 KLRK1P26718 216 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 HOXD11P31277 338 aaPredicted RBP11.24□□□□□ -0.61
VPS52-216ENST00000471309 NEK4P51957 841 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 GPSM2P81274 684 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 WASHC4Q2M389 1173 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 TSGA10IPQ3SY00 556 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 SLC9C2Q5TAH2 1124 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 VPS37DQ86XT2 251 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 RASEFQ8IZ41 740 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 OSBP2Q969R2 916 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 FOXD4L1Q9NU39 408 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 ANKIB1Q9P2G1 1089 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 WWC3Q9ULE0 1092 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 C10orf71Q711Q0 1435 aa11.24□□□□□ -0.61
VPS52-216ENST00000471309 KIF13BQ9NQT8 1826 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 IGSF3O75054 1194 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 HSPD1P10809 573 aaKnown RBP11.23□□□□□ -0.61
VPS52-216ENST00000471309 ATP2B4P23634 1241 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 ALDH1B1P30837 517 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 HIBADHP31937 336 aaKnown RBP11.23□□□□□ -0.61
VPS52-216ENST00000471309 KRT32Q14532 448 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 SLFNL1Q499Z3 407 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 SP8Q8IXZ3 490 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 SLC16A10Q8TF71 515 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 MASTLQ96GX5 879 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 ATP6V0A2Q9Y487 856 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 ZNF532Q9HCE3 1301 aa11.23□□□□□ -0.61
VPS52-216ENST00000471309 GPAA1O43292 621 aa11.22□□□□□ -0.61
VPS52-216ENST00000471309 UFL1O94874 794 aa11.22□□□□□ -0.61
VPS52-216ENST00000471309 PSMA5P28066 241 aa11.22□□□□□ -0.61
VPS52-216ENST00000471309 STYK1Q6J9G0 422 aa11.22□□□□□ -0.61
VPS52-216ENST00000471309 TMED8Q6PL24 325 aaPredicted RBP11.22□□□□□ -0.61
VPS52-216ENST00000471309 ZNF804AQ7Z570 1209 aa11.22□□□□□ -0.61
VPS52-216ENST00000471309 TIAM2Q8IVF5 1701 aa11.22□□□□□ -0.61
VPS52-216ENST00000471309 TTC14Q96N46 770 aa11.22□□□□□ -0.61
VPS52-216ENST00000471309 UPF3BQ9BZI7 483 aaKnown RBP11.22□□□□□ -0.61
VPS52-216ENST00000471309 PUS7LQ9H0K6 701 aaKnown RBP11.22□□□□□ -0.61
VPS52-216ENST00000471309 ZSWIM6Q9HCJ5 1215 aa11.22□□□□□ -0.61
VPS52-216ENST00000471309 GGA1Q9UJY5 639 aa11.22□□□□□ -0.61
VPS52-216ENST00000471309 CCDC88AQ3V6T2 1871 aa11.21□□□□□ -0.61
VPS52-216ENST00000471309 ZMYM6O95789 1325 aa11.21□□□□□ -0.61
VPS52-216ENST00000471309 SALL1Q9NSC2 1324 aa11.21□□□□□ -0.61
VPS52-216ENST00000471309 CASTP20810 708 aaKnown RBP11.21□□□□□ -0.61
VPS52-216ENST00000471309 VPS53Q5VIR6 699 aa11.21□□□□□ -0.61
VPS52-216ENST00000471309 SLC51AQ86UW1 340 aa11.21□□□□□ -0.61
VPS52-216ENST00000471309 TXNRD3Q86VQ6 643 aa11.21□□□□□ -0.61
VPS52-216ENST00000471309 MAGEB6Q8N7X4 407 aa11.21□□□□□ -0.61
VPS52-216ENST00000471309 JAKMIP1Q96N16 626 aaKnown RBP11.21□□□□□ -0.61
VPS52-216ENST00000471309 LRP2BPQ9P2M1 347 aa11.21□□□□□ -0.61
VPS52-216ENST00000471309 NSFL1CQ9UNZ2 370 aaKnown RBP11.21□□□□□ -0.61
VPS52-216ENST00000471309 IQSEC3Q9UPP2 1182 aaPredicted RBP11.21□□□□□ -0.61
VPS52-216ENST00000471309 FOXP2O15409 715 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 CYP21A2P08686 494 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 DDIT3P35638 169 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 ADCK5Q3MIX3 580 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 RUFY3Q7L099 469 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 C2CD5Q86YS7 1000 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 ZGPATQ8N5A5 531 aaKnown RBP11.2□□□□□ -0.62
VPS52-216ENST00000471309 TDRD7Q8NHU6 1098 aaKnown RBP11.2□□□□□ -0.62
VPS52-216ENST00000471309 TBC1D16Q8TBP0 767 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 AIDAQ96BJ3 306 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 CTNNA3Q9UI47 895 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 CYP46A1Q9Y6A2 500 aa11.2□□□□□ -0.62
VPS52-216ENST00000471309 H0YIN7 160 aa11.19□□□□□ -0.62
VPS52-216ENST00000471309 FRAT2O75474 233 aaPredicted RBP11.19□□□□□ -0.62
VPS52-216ENST00000471309 GNAT2P19087 354 aa11.19□□□□□ -0.62
VPS52-216ENST00000471309 STRBPQ96SI9 672 aaKnown RBP11.19□□□□□ -0.62
VPS52-216ENST00000471309 SLKQ9H2G2 1235 aaPredicted RBP11.19□□□□□ -0.62
VPS52-216ENST00000471309 RAI14Q9P0K7 980 aa11.19□□□□□ -0.62
VPS52-216ENST00000471309 ABCF2Q9UG63 623 aa11.19□□□□□ -0.62
VPS52-216ENST00000471309 MBD4O95243 580 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 HSP90AA1P07900 732 aaKnown RBP11.18□□□□□ -0.62
VPS52-216ENST00000471309 HMGB1P09429 215 aaKnown RBP11.18□□□□□ -0.62
VPS52-216ENST00000471309 IL1R1P14778 569 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 RPS6KB1P23443 525 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 AK2P54819 239 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 CUL4AQ13619 759 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 IMMTQ16891 758 aaKnown RBP11.18□□□□□ -0.62
VPS52-216ENST00000471309 BLOC1S2Q6QNY1 142 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms