RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 ARID5BQ14865 1188 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 PHTF2Q8N3S3 785 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 C8orf58Q8NAV2 365 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 RETREG2Q8NC44 543 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 FOXJ1Q92949 421 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 TRAIPQ9BWF2 469 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 ASAP1Q9ULH1 1129 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 BCL9O00512 1426 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 SCN11AQ9UI33 1791 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 PRAMEF22A3QJZ6 481 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 PIK3CDO00329 1044 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 ELL2O00472 640 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-208ENST00000470268 EIF4A1P60842 406 aaKnown RBP6.11□□□□□ -1.43
SF3B1-208ENST00000470268 SLFNL1Q499Z3 407 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 ZNF790Q6PG37 636 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 PLEKHM2Q8IWE5 1019 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 SYTL4Q96C24 671 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-208ENST00000470268 C1QTNF2Q9BXJ5 285 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 MYH16Q9H6N6 1097 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 TMOD3Q9NYL9 352 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 SOBPA7XYQ1 873 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 LZTS3O60299 673 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-208ENST00000470268 BMP2P12643 396 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 AGERQ15109 404 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 ERFEQ4G0M1 354 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 C4orf48Q5BLP8 95 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 DZIP3Q86Y13 1208 aaKnown RBP6.1□□□□□ -1.43
SF3B1-208ENST00000470268 ITPKCQ96DU7 683 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 ZNF496Q96IT1 587 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-208ENST00000470268 ZFAND3Q9H8U3 227 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 ATG3Q9NT62 314 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 BABAM1Q9NWV8 329 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 SUPT16HQ9Y5B9 1047 aaKnown RBP6.1□□□□□ -1.43
SF3B1-208ENST00000470268 SIPA1L3O60292 1781 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-208ENST00000470268 HEG1Q9ULI3 1381 aa6.1□□□□□ -1.43
SF3B1-208ENST00000470268 MAGEB6P1A0A0J9YX57 407 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 ATG7O95352 703 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 SKIP12755 728 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 IRX6P78412 446 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-208ENST00000470268 C6orf118Q5T5N4 469 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 RNF135Q8IUD6 432 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 TRMT44Q8IYL2 757 aaKnown RBP6.09□□□□□ -1.43
SF3B1-208ENST00000470268 LINC00528Q8N1L1 170 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 MEIOBQ8N635 442 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 SLC4A9Q96Q91 983 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 MAP4K5Q9Y4K4 846 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 BRWD3Q6RI45 1802 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 DOT1LQ8TEK3 1739 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 USP17L3A6NCW0 530 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 USP17L4A6NCW7 530 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 USP17L5A8MUK1 530 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 PTCD1O75127 700 aaKnown RBP6.09□□□□□ -1.43
SF3B1-208ENST00000470268 VAMP4O75379 141 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 GRM5P41594 1212 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 TWISTNBQ3B726 338 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-208ENST00000470268 MAP7D1Q3KQU3 841 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 USP17L2Q6R6M4 530 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 FAM196AQ6ZSG2 479 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 USP17L1Q7RTZ2 530 aa6.09□□□□□ -1.43
SF3B1-208ENST00000470268 CDV3Q9UKY7 258 aaKnown RBP6.09□□□□□ -1.43
SF3B1-208ENST00000470268 KCPQ6ZWJ8 1503 aa6.09□□□□□ -1.44
SF3B1-208ENST00000470268 KDM3BQ7LBC6 1761 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 RNF225M0QZC1 329 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-208ENST00000470268 GIGYF1O75420 1035 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-208ENST00000470268 TRIM37O94972 964 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 NR3C2P08235 984 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 CCDC125Q86Z20 511 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 TSEN34Q9BSV6 310 aaKnown RBP6.08□□□□□ -1.44
SF3B1-208ENST00000470268 VRTNQ9H8Y1 702 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 USTQ9Y2C2 406 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 VIRMAQ69YN4 1812 aaKnown RBP6.08□□□□□ -1.44
SF3B1-208ENST00000470268 PAPPAQ13219 1627 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 TCERG1O14776 1098 aaKnown RBP6.08□□□□□ -1.44
SF3B1-208ENST00000470268 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.08□□□□□ -1.444e-8■■□□□ 11.5
SF3B1-208ENST00000470268 TTC5Q8N0Z6 440 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 PLPP7Q8NBV4 271 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 SLC10A4Q96EP9 437 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 BCL2L13Q9BXK5 485 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 USP16Q9Y5T5 823 aa6.08□□□□□ -1.44
SF3B1-208ENST00000470268 ITGB4P16144 1822 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 BCAR3O75815 825 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 RARSP54136 660 aaKnown RBP6.07□□□□□ -1.44
SF3B1-208ENST00000470268 KCNQ4P56696 695 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 NBPF20Q3BBV1 942 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 RNF20Q5VTR2 975 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 TMEM151AQ8N4L1 468 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 SSH1Q8WYL5 1049 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 FMNL2Q96PY5 1086 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 RCAN3Q9UKA8 241 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 PALLDQ8WX93 1383 aa6.07□□□□□ -1.44
SF3B1-208ENST00000470268 ESPNB1AK53 854 aa6.06□□□□□ -1.44
SF3B1-208ENST00000470268 ELOAQ14241 798 aaKnown RBP6.06□□□□□ -1.44
SF3B1-208ENST00000470268 SUZ12Q15022 739 aaKnown RBP6.06□□□□□ -1.44
SF3B1-208ENST00000470268 NHSQ6T4R5 1651 aa6.06□□□□□ -1.44
SF3B1-208ENST00000470268 LOC102724428A0A0B4J2F2 783 aa6.06□□□□□ -1.44
SF3B1-208ENST00000470268 ANXA1P04083 346 aa6.06□□□□□ -1.44
SF3B1-208ENST00000470268 SNRPA1P09661 255 aaKnown RBP6.06□□□□□ -1.44
SF3B1-208ENST00000470268 CT47B1P0C2W7 299 aaPredicted RBP6.06□□□□□ -1.44
SF3B1-208ENST00000470268 EIF2S2P20042 333 aaKnown RBP6.06□□□□□ -1.44
SF3B1-208ENST00000470268 PIP4K2AP48426 406 aaPredicted RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms