RNA–Protein interactions for RNA: ENST00000469670.1

TTC28-205, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-205ENST00000469670 PCDHAC2Q9Y5I4 1007 aa23.42■■□□□ 1.34
TTC28-205ENST00000469670 EN2P19622 333 aaPredicted RBP23.41■■□□□ 1.34
TTC28-205ENST00000469670 CHRNDQ07001 517 aa23.41■■□□□ 1.34
TTC28-205ENST00000469670 MKI67P46013 3256 aaKnown RBP23.41■■□□□ 1.34
TTC28-205ENST00000469670 CLRN2A0PK11 232 aa23.4■■□□□ 1.34
TTC28-205ENST00000469670 MYO1BO43795 1136 aa23.4■■□□□ 1.34
TTC28-205ENST00000469670 GJA5P36382 358 aa23.4■■□□□ 1.34
TTC28-205ENST00000469670 PLA2G12BQ9BX93 195 aa23.4■■□□□ 1.34
TTC28-205ENST00000469670 F8W031 263 aaPredicted RBP23.39■■□□□ 1.33
TTC28-205ENST00000469670 IREB2P48200 963 aaKnown RBP23.39■■□□□ 1.33
TTC28-205ENST00000469670 SP3Q02447 781 aa23.39■■□□□ 1.33
TTC28-205ENST00000469670 CFAP100Q494V2 611 aa23.39■■□□□ 1.33
TTC28-205ENST00000469670 NBPF12Q5TAG4 269 aaPredicted RBP23.39■■□□□ 1.33
TTC28-205ENST00000469670 STK31Q9BXU1 1019 aa23.39■■□□□ 1.33
TTC28-205ENST00000469670 VEZTQ9HBM0 779 aa23.39■■□□□ 1.33
TTC28-205ENST00000469670 MYH3P11055 1940 aa23.38■■□□□ 1.33
TTC28-205ENST00000469670 SPDYE2BA6NHP3 402 aa23.38■■□□□ 1.33
TTC28-205ENST00000469670 SPDYE6P0CI01 402 aa23.38■■□□□ 1.33
TTC28-205ENST00000469670 DDX10Q13206 875 aaKnown RBP23.38■■□□□ 1.33
TTC28-205ENST00000469670 PTPN18Q99952 460 aa23.38■■□□□ 1.33
TTC28-205ENST00000469670 IRS2Q9Y4H2 1338 aa23.37■■□□□ 1.33
TTC28-205ENST00000469670 TESPA1A2RU30 521 aaPredicted RBP23.37■■□□□ 1.33
TTC28-205ENST00000469670 SNAP23O00161 211 aa23.37■■□□□ 1.33
TTC28-205ENST00000469670 USP2O75604 605 aaPredicted RBP23.37■■□□□ 1.33
TTC28-205ENST00000469670 CSF1RP07333 972 aa23.37■■□□□ 1.33
TTC28-205ENST00000469670 GCKRQ14397 625 aa23.37■■□□□ 1.33
TTC28-205ENST00000469670 ANKRD13AQ8IZ07 590 aa23.37■■□□□ 1.33
TTC28-205ENST00000469670 PRMT6Q96LA8 375 aaPredicted RBP23.37■■□□□ 1.33
TTC28-205ENST00000469670 FXR1P51114 621 aaKnown RBP eCLIP23.36■■□□□ 1.33
TTC28-205ENST00000469670 CAP1Q01518 475 aa23.36■■□□□ 1.33
TTC28-205ENST00000469670 C15orf52Q6ZUT6 534 aaKnown RBP23.36■■□□□ 1.33
TTC28-205ENST00000469670 G2E3Q7L622 706 aa23.36■■□□□ 1.33
TTC28-205ENST00000469670 TMEM106CQ9BVX2 250 aa23.36■■□□□ 1.33
TTC28-205ENST00000469670 AOX1Q06278 1338 aa23.35■■□□□ 1.33
TTC28-205ENST00000469670 TAF5LO75529 589 aa23.35■■□□□ 1.33
TTC28-205ENST00000469670 CASP7P55210 303 aa23.35■■□□□ 1.33
TTC28-205ENST00000469670 FKBP1AP62942 108 aaKnown RBP23.35■■□□□ 1.33
TTC28-205ENST00000469670 RASA3Q14644 834 aa23.35■■□□□ 1.33
TTC28-205ENST00000469670 RBBP6Q7Z6E9 1792 aaKnown RBP23.35■■□□□ 1.33
TTC28-205ENST00000469670 ANKRD18BA2A2Z9 1011 aa23.34■■□□□ 1.33
TTC28-205ENST00000469670 IL1R1P14778 569 aa23.34■■□□□ 1.33
TTC28-205ENST00000469670 ZNF804AQ7Z570 1209 aa23.34■■□□□ 1.33
TTC28-205ENST00000469670 HELBQ8NG08 1087 aaPredicted RBP23.34■■□□□ 1.33
TTC28-205ENST00000469670 ZNF333Q96JL9 665 aa23.34■■□□□ 1.33
TTC28-205ENST00000469670 LAMB1P07942 1786 aa23.34■■□□□ 1.33
TTC28-205ENST00000469670 RBM5P52756 815 aaKnown RBP eCLIP23.33■■□□□ 1.33
TTC28-205ENST00000469670 OPTNQ96CV9 577 aa23.33■■□□□ 1.33
TTC28-205ENST00000469670 MYH16Q9H6N6 1097 aa23.33■■□□□ 1.33
TTC28-205ENST00000469670 ELP3Q9H9T3 547 aa23.33■■□□□ 1.33
TTC28-205ENST00000469670 CENPFP49454 3210 aa23.33■■□□□ 1.32
TTC28-205ENST00000469670 SLC4A2P04920 1241 aa23.32■■□□□ 1.32
TTC28-205ENST00000469670 TSR2Q969E8 191 aaKnown RBP23.32■■□□□ 1.32
TTC28-205ENST00000469670 JAG2Q9Y219 1238 aa23.32■■□□□ 1.32
TTC28-205ENST00000469670 KIAA0100Q14667 2235 aaKnown RBP23.32■■□□□ 1.32
TTC28-205ENST00000469670 MS4A4AQ96JQ5 239 aa23.31■■□□□ 1.32
TTC28-205ENST00000469670 ARHGEF6Q15052 776 aa23.3■■□□□ 1.32
TTC28-205ENST00000469670 SLC9C1Q4G0N8 1177 aa23.3■■□□□ 1.32
TTC28-205ENST00000469670 NBPF11Q86T75 865 aa23.3■■□□□ 1.32
TTC28-205ENST00000469670 COLQQ9Y215 455 aaPredicted RBP23.3■■□□□ 1.32
TTC28-205ENST00000469670 PTCH2Q9Y6C5 1203 aa23.3■■□□□ 1.32
TTC28-205ENST00000469670 BRCA2P51587 3418 aa23.3■■□□□ 1.32
TTC28-205ENST00000469670 TNFAIP1Q13829 316 aa23.29■■□□□ 1.32
TTC28-205ENST00000469670 TWISTNBQ3B726 338 aaPredicted RBP23.29■■□□□ 1.32
TTC28-205ENST00000469670 BRI3BPQ8WY22 251 aa23.29■■□□□ 1.32
TTC28-205ENST00000469670 ZFYVE28Q9HCC9 887 aa23.29■■□□□ 1.32
TTC28-205ENST00000469670 ECM29Q5VYK3 1845 aa23.29■■□□□ 1.32
TTC28-205ENST00000469670 FLIIQ13045 1269 aa23.28■■□□□ 1.32
TTC28-205ENST00000469670 IFIT5Q13325 482 aaKnown RBP23.28■■□□□ 1.32
TTC28-205ENST00000469670 TAF1CQ15572 869 aaPredicted RBP23.28■■□□□ 1.32
TTC28-205ENST00000469670 SLC4A8Q2Y0W8 1093 aa23.28■■□□□ 1.32
TTC28-205ENST00000469670 SPDYE2Q495Y8 402 aa23.28■■□□□ 1.32
TTC28-205ENST00000469670 LINS1Q8NG48 757 aa23.28■■□□□ 1.32
TTC28-205ENST00000469670 DNAAF4Q8WXU2 420 aa23.28■■□□□ 1.32
TTC28-205ENST00000469670 ZNF70Q9UC06 446 aaPredicted RBP23.28■■□□□ 1.32
TTC28-205ENST00000469670 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.27■■□□□ 1.32
TTC28-205ENST00000469670 CNKSR2Q8WXI2 1034 aa23.27■■□□□ 1.32
TTC28-205ENST00000469670 CHMP3Q9Y3E7 222 aa23.27■■□□□ 1.32
TTC28-205ENST00000469670 CCL15-CCL14A0A0B4J2E2 113 aa23.26■■□□□ 1.31
TTC28-205ENST00000469670 GTF2A2P52657 109 aa23.26■■□□□ 1.31
TTC28-205ENST00000469670 FKBP5Q13451 457 aaPredicted RBP23.26■■□□□ 1.31
TTC28-205ENST00000469670 CCL15Q16663 113 aa23.26■■□□□ 1.31
TTC28-205ENST00000469670 CDAN1Q8IWY9 1227 aa23.26■■□□□ 1.31
TTC28-205ENST00000469670 FOXO4P98177 505 aa23.25■■□□□ 1.31
TTC28-205ENST00000469670 TEPSINQ96N21 525 aa23.25■■□□□ 1.31
TTC28-205ENST00000469670 TDRD3Q9H7E2 651 aaKnown RBP23.25■■□□□ 1.31
TTC28-205ENST00000469670 PRKRIP1Q9H875 184 aaPredicted RBP23.25■■□□□ 1.31
TTC28-205ENST00000469670 FAM205AQ6ZU69 1335 aa23.25■■□□□ 1.31
TTC28-205ENST00000469670 PLIN1O60240 522 aa23.24■■□□□ 1.31
TTC28-205ENST00000469670 MYCP01106 439 aaPredicted RBP23.24■■□□□ 1.31
TTC28-205ENST00000469670 MAP3K9P80192 1104 aa23.24■■□□□ 1.31
TTC28-205ENST00000469670 VGLL4Q14135 290 aa23.24■■□□□ 1.31
TTC28-205ENST00000469670 MFSD14BQ5SR56 506 aa23.24■■□□□ 1.31
TTC28-205ENST00000469670 FAM43AQ8N2R8 423 aa23.24■■□□□ 1.31
TTC28-205ENST00000469670 SERPINA10Q9UK55 444 aa23.24■■□□□ 1.31
TTC28-205ENST00000469670 TTF2Q9UNY4 1162 aaKnown RBP23.24■■□□□ 1.31
TTC28-205ENST00000469670 OTOFQ9HC10 1997 aa23.22■■□□□ 1.31
TTC28-205ENST00000469670 TCP10L2B9ZVM9 353 aa23.22■■□□□ 1.31
TTC28-205ENST00000469670 H0YGN5 161 aa23.22■■□□□ 1.31
TTC28-205ENST00000469670 DZIP1LQ8IYY4 767 aaKnown RBP23.22■■□□□ 1.31
TTC28-205ENST00000469670 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms