RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 MS4A1P11836 297 aa8.78□□□□□ -1
CLDN4-204ENST00000466411 PDE4AP27815 886 aa8.78□□□□□ -1
CLDN4-204ENST00000466411 PIP4K2AP48426 406 aaPredicted RBP8.78□□□□□ -1
CLDN4-204ENST00000466411 E2F4Q16254 413 aa8.78□□□□□ -1
CLDN4-204ENST00000466411 HLFQ16534 295 aa8.78□□□□□ -1
CLDN4-204ENST00000466411 NBPF10Q6P3W6 841 aaKnown RBP8.78□□□□□ -1
CLDN4-204ENST00000466411 GIGYF2Q6Y7W6 1299 aaKnown RBP8.78□□□□□ -1
CLDN4-204ENST00000466411 SULF1Q8IWU6 871 aa8.78□□□□□ -1
CLDN4-204ENST00000466411 CD99L2Q8TCZ2 262 aa8.78□□□□□ -1
CLDN4-204ENST00000466411 DPF3Q92784 378 aa8.78□□□□□ -1
CLDN4-204ENST00000466411 OCEL1Q9H607 264 aa8.78□□□□□ -1
CLDN4-204ENST00000466411 GGA3Q9NZ52 723 aa8.78□□□□□ -1
CLDN4-204ENST00000466411 ZNF646O15015 1829 aaPredicted RBP8.77□□□□□ -1
CLDN4-204ENST00000466411 FAM177BA6PVY3 158 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 ELL2O00472 640 aaPredicted RBP8.77□□□□□ -1.01
CLDN4-204ENST00000466411 SREBF2Q12772 1141 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 PDIA6Q15084 440 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 RBM26Q5T8P6 1007 aaKnown RBP8.77□□□□□ -1.01
CLDN4-204ENST00000466411 COPS6Q7L5N1 327 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 PPP1R42Q7Z4L9 355 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 RIC3Q7Z5B4 369 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 NUTM1Q86Y26 1132 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 DDX27Q96GQ7 796 aaKnown RBP8.77□□□□□ -1.01
CLDN4-204ENST00000466411 ERO1AQ96HE7 468 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 EFCC1Q9HA90 598 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 KCNQ5Q9NR82 932 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 DUOX1Q9NRD9 1551 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 SCN9AQ15858 1988 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 TAF1P21675 1872 aa8.77□□□□□ -1.01
CLDN4-204ENST00000466411 RTL9Q8NET4 1388 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 IGF2BP3O00425 579 aaKnown RBP eCLIP8.76□□□□□ -1.01
CLDN4-204ENST00000466411 ALDH1A1P00352 501 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 FLIIQ13045 1269 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 TRIM28Q13263 835 aaKnown RBP8.76□□□□□ -1.01
CLDN4-204ENST00000466411 FKBP5Q13451 457 aaPredicted RBP8.76□□□□□ -1.01
CLDN4-204ENST00000466411 KRT24Q2M2I5 525 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 KIF4BQ2VIQ3 1234 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 KSR2Q6VAB6 950 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 LRP10Q7Z4F1 713 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 TSPYL6Q8N831 410 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 SUPT20HQ8NEM7 779 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 XAGE3Q8WTP9 111 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 ARHGAP45Q92619 1136 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 DCBLD2Q96PD2 775 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 SMC4Q9NTJ3 1288 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 STAP2Q9UGK3 403 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 HDAC5Q9UQL6 1122 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 PTCH2Q9Y6C5 1203 aa8.76□□□□□ -1.01
CLDN4-204ENST00000466411 PLCG2P16885 1265 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 RPS12P25398 132 aaKnown RBP8.75□□□□□ -1.01
CLDN4-204ENST00000466411 BMP8BP34820 402 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 PTPN12Q05209 780 aaKnown RBP8.75□□□□□ -1.01
CLDN4-204ENST00000466411 TCIRG1Q13488 830 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 SLC4A8Q2Y0W8 1093 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 LRIT3Q3SXY7 679 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 LDLRAD1Q5T700 205 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 SPRYD7Q5W111 196 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.75□□□□□ -1.01
CLDN4-204ENST00000466411 CCDC191Q8NCU4 936 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 NECTIN2Q92692 538 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 RPGRQ92834 1020 aaKnown RBP8.75□□□□□ -1.01
CLDN4-204ENST00000466411 CDCA7LQ96GN5 454 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 GDF15Q99988 308 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 API5Q9BZZ5 524 aaKnown RBP8.75□□□□□ -1.01
CLDN4-204ENST00000466411 MYH3P11055 1940 aa8.75□□□□□ -1.01
CLDN4-204ENST00000466411 GTF2E1P29083 439 aaPredicted RBP8.74□□□□□ -1.01
CLDN4-204ENST00000466411 AIMP1Q12904 312 aaKnown RBP8.74□□□□□ -1.01
CLDN4-204ENST00000466411 SLC9C1Q4G0N8 1177 aa8.74□□□□□ -1.01
CLDN4-204ENST00000466411 ANGEL2Q5VTE6 544 aaKnown RBP8.74□□□□□ -1.01
CLDN4-204ENST00000466411 PRAMEF18Q5VWM3 479 aa8.74□□□□□ -1.01
CLDN4-204ENST00000466411 NBPF11Q86T75 865 aa8.74□□□□□ -1.01
CLDN4-204ENST00000466411 SP8Q8IXZ3 490 aa8.74□□□□□ -1.01
CLDN4-204ENST00000466411 RBM17Q96I25 401 aaKnown RBP8.74□□□□□ -1.01
CLDN4-204ENST00000466411 METTL22Q9BUU2 404 aaPredicted RBP8.74□□□□□ -1.01
CLDN4-204ENST00000466411 TMEM121BQ9BXQ6 578 aaPredicted RBP8.74□□□□□ -1.01
CLDN4-204ENST00000466411 CHMP4BQ9H444 224 aaKnown RBP8.74□□□□□ -1.01
CLDN4-204ENST00000466411 ZBTB3Q9H5J0 574 aa8.74□□□□□ -1.01
CLDN4-204ENST00000466411 BOLA1Q9Y3E2 137 aa8.74□□□□□ -1.01
CLDN4-204ENST00000466411 ALPK3Q96L96 1907 aa8.74□□□□□ -1.01
CLDN4-204ENST00000466411 VIL1P09327 827 aaKnown RBP8.73□□□□□ -1.01
CLDN4-204ENST00000466411 RARSP54136 660 aaKnown RBP8.73□□□□□ -1.01
CLDN4-204ENST00000466411 INHBEP58166 350 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 ZNF280AP59817 542 aaPredicted RBP8.73□□□□□ -1.01
CLDN4-204ENST00000466411 SP3Q02447 781 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 SCARF1Q14162 830 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 PROSER3Q2NL68 480 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 DPP8Q6V1X1 898 aaPredicted RBP8.73□□□□□ -1.01
CLDN4-204ENST00000466411 TTLL7Q6ZT98 887 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 ZNF34Q8IZ26 560 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 LINS1Q8NG48 757 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 DNAAF4Q8WXU2 420 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 FAM122AQ96E09 287 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 GUCD1Q96NT3 240 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 GPHNQ9NQX3 736 aaPredicted RBP8.73□□□□□ -1.01
CLDN4-204ENST00000466411 CWC25Q9NXE8 425 aaPredicted RBP8.73□□□□□ -1.01
CLDN4-204ENST00000466411 SCAF8Q9UPN6 1271 aaKnown RBP8.73□□□□□ -1.01
CLDN4-204ENST00000466411 MAP3K2Q9Y2U5 619 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 NR2E3Q9Y5X4 410 aa8.73□□□□□ -1.01
CLDN4-204ENST00000466411 PI4KAP2A4QPH2 592 aa8.72□□□□□ -1.01
CLDN4-204ENST00000466411 POTEB2H3BUK9 544 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms