RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 LMBR1LQ6UX01 489 aa22.17■■□□□ 1.14
COL7A1-205ENST00000465238 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.17■■□□□ 1.14
COL7A1-205ENST00000465238 SUCLG2Q96I99 432 aa22.17■■□□□ 1.14
COL7A1-205ENST00000465238 CD209Q9NNX6 404 aa22.17■■□□□ 1.14
COL7A1-205ENST00000465238 SAGE1Q9NXZ1 904 aa22.17■■□□□ 1.14
COL7A1-205ENST00000465238 HDAC9Q9UKV0 1011 aa22.17■■□□□ 1.14
COL7A1-205ENST00000465238 HDAC5Q9UQL6 1122 aa22.17■■□□□ 1.14
COL7A1-205ENST00000465238 AKAP11Q9UKA4 1901 aa22.17■■□□□ 1.14
COL7A1-205ENST00000465238 IRS2Q9Y4H2 1338 aa22.16■■□□□ 1.14
COL7A1-205ENST00000465238 TAF5LO75529 589 aa22.16■■□□□ 1.14
COL7A1-205ENST00000465238 UBTFL1P0CB47 393 aaPredicted RBP22.16■■□□□ 1.14
COL7A1-205ENST00000465238 CCDC57Q2TAC2 916 aa22.16■■□□□ 1.14
COL7A1-205ENST00000465238 TMEM57Q8N5G2 664 aa22.16■■□□□ 1.14
COL7A1-205ENST00000465238 EPHA10Q5JZY3 1008 aa22.15■■□□□ 1.14
COL7A1-205ENST00000465238 KIAA0825Q8IV33 1275 aa22.15■■□□□ 1.14
COL7A1-205ENST00000465238 REM2Q8IYK8 340 aaPredicted RBP22.15■■□□□ 1.14
COL7A1-205ENST00000465238 HELBQ8NG08 1087 aaPredicted RBP22.15■■□□□ 1.14
COL7A1-205ENST00000465238 SNAP23O00161 211 aa22.14■■□□□ 1.13
COL7A1-205ENST00000465238 GNAI3P08754 354 aa22.14■■□□□ 1.13
COL7A1-205ENST00000465238 TAF7LQ5H9L4 462 aa22.14■■□□□ 1.13
COL7A1-205ENST00000465238 LDHAL6AQ6ZMR3 332 aa22.14■■□□□ 1.13
COL7A1-205ENST00000465238 ZNF804AQ7Z570 1209 aa22.14■■□□□ 1.13
COL7A1-205ENST00000465238 RASAL3Q86YV0 1011 aa22.14■■□□□ 1.13
COL7A1-205ENST00000465238 SCAF8Q9UPN6 1271 aaKnown RBP22.14■■□□□ 1.13
COL7A1-205ENST00000465238 PLIN1O60240 522 aa22.13■■□□□ 1.13
COL7A1-205ENST00000465238 SASH1O94885 1247 aa22.13■■□□□ 1.13
COL7A1-205ENST00000465238 NF2P35240 595 aa22.13■■□□□ 1.13
COL7A1-205ENST00000465238 APOBEC3FQ8IUX4 373 aaKnown RBP22.13■■□□□ 1.13
COL7A1-205ENST00000465238 KAZALD1Q96I82 304 aa22.13■■□□□ 1.13
COL7A1-205ENST00000465238 CSRNP1Q96S65 589 aa22.13■■□□□ 1.13
COL7A1-205ENST00000465238 RLBP1P12271 317 aa22.12■■□□□ 1.13
COL7A1-205ENST00000465238 PRAMEF18Q5VWM3 479 aa22.12■■□□□ 1.13
COL7A1-205ENST00000465238 ITPRIPQ8IWB1 547 aa22.12■■□□□ 1.13
COL7A1-205ENST00000465238 PANK1Q8TE04 598 aa22.12■■□□□ 1.13
COL7A1-205ENST00000465238 ZBED3Q96IU2 234 aaPredicted RBP22.12■■□□□ 1.13
COL7A1-205ENST00000465238 ZNF594Q96JF6 807 aaPredicted RBP22.12■■□□□ 1.13
COL7A1-205ENST00000465238 MEIS3Q99687 375 aa22.12■■□□□ 1.13
COL7A1-205ENST00000465238 BICC1Q9H694 974 aaKnown RBP22.12■■□□□ 1.13
COL7A1-205ENST00000465238 CNNM1Q9NRU3 951 aa22.12■■□□□ 1.13
COL7A1-205ENST00000465238 RNF186Q9NXI6 227 aa22.12■■□□□ 1.13
COL7A1-205ENST00000465238 IL1R1P14778 569 aa22.11■■□□□ 1.13
COL7A1-205ENST00000465238 MCOLN1Q9GZU1 580 aa22.11■■□□□ 1.13
COL7A1-205ENST00000465238 CCDC85CA6NKD9 419 aa22.1■■□□□ 1.13
COL7A1-205ENST00000465238 UBE2Q2LH0YL09 131 aa22.1■■□□□ 1.13
COL7A1-205ENST00000465238 TRPA1O75762 1119 aa22.1■■□□□ 1.13
COL7A1-205ENST00000465238 TTLL12Q14166 644 aaPredicted RBP22.1■■□□□ 1.13
COL7A1-205ENST00000465238 MOB2Q70IA6 237 aa22.1■■□□□ 1.13
COL7A1-205ENST00000465238 FKBP1AP62942 108 aaKnown RBP22.09■■□□□ 1.13
COL7A1-205ENST00000465238 DGKZQ13574 1117 aa22.09■■□□□ 1.13
COL7A1-205ENST00000465238 DLGAP5Q15398 846 aa22.09■■□□□ 1.13
COL7A1-205ENST00000465238 RABL6Q3YEC7 729 aaPredicted RBP22.09■■□□□ 1.13
COL7A1-205ENST00000465238 CERS5Q8N5B7 392 aa22.09■■□□□ 1.13
COL7A1-205ENST00000465238 ANKRD44Q8N8A2 993 aa22.09■■□□□ 1.13
COL7A1-205ENST00000465238 MTMR14Q8NCE2 650 aa22.09■■□□□ 1.13
COL7A1-205ENST00000465238 COL1A1P02452 1464 aaPredicted RBP22.09■■□□□ 1.13
COL7A1-205ENST00000465238 LRRFIP2Q9Y608 721 aaKnown RBP22.08■■□□□ 1.13
COL7A1-205ENST00000465238 ECM29Q5VYK3 1845 aa22.08■■□□□ 1.12
COL7A1-205ENST00000465238 PDE3AQ14432 1141 aa22.07■■□□□ 1.12
COL7A1-205ENST00000465238 GNAI2P04899 355 aa22.06■■□□□ 1.12
COL7A1-205ENST00000465238 UBE4AQ14139 1066 aa22.06■■□□□ 1.12
COL7A1-205ENST00000465238 ARMC9Q7Z3E5 817 aa22.06■■□□□ 1.12
COL7A1-205ENST00000465238 DEFB129Q9H1M3 183 aa22.05■■□□□ 1.12
COL7A1-205ENST00000465238 COG6Q9Y2V7 657 aa22.05■■□□□ 1.12
COL7A1-205ENST00000465238 F8W031 263 aaPredicted RBP22.04■■□□□ 1.12
COL7A1-205ENST00000465238 ZBTB7BO15156 539 aaPredicted RBP22.04■■□□□ 1.12
COL7A1-205ENST00000465238 MYO1BO43795 1136 aa22.04■■□□□ 1.12
COL7A1-205ENST00000465238 MVPQ14764 893 aaKnown RBP22.04■■□□□ 1.12
COL7A1-205ENST00000465238 PPP2R3BQ9Y5P8 575 aa22.04■■□□□ 1.12
COL7A1-205ENST00000465238 FAM205AQ6ZU69 1335 aa22.04■■□□□ 1.12
COL7A1-205ENST00000465238 SPDYE2BA6NHP3 402 aa22.03■■□□□ 1.12
COL7A1-205ENST00000465238 SPDYE6P0CI01 402 aa22.03■■□□□ 1.12
COL7A1-205ENST00000465238 RRP1P56182 461 aaKnown RBP22.03■■□□□ 1.12
COL7A1-205ENST00000465238 CFAP100Q494V2 611 aa22.03■■□□□ 1.12
COL7A1-205ENST00000465238 TDRD7Q8NHU6 1098 aaKnown RBP22.03■■□□□ 1.12
COL7A1-205ENST00000465238 PUS3Q9BZE2 481 aaKnown RBP22.03■■□□□ 1.12
COL7A1-205ENST00000465238 DDX19BQ9UMR2 479 aa22.03■■□□□ 1.12
COL7A1-205ENST00000465238 MROH5Q6ZUA9 1318 aa22.03■■□□□ 1.12
COL7A1-205ENST00000465238 HIBADHP31937 336 aaKnown RBP22.02■■□□□ 1.12
COL7A1-205ENST00000465238 RGS19P49795 217 aa22.02■■□□□ 1.12
COL7A1-205ENST00000465238 PTPN12Q05209 780 aaKnown RBP22.02■■□□□ 1.12
COL7A1-205ENST00000465238 PRKG1Q13976 671 aa22.02■■□□□ 1.12
COL7A1-205ENST00000465238 LDLRAD1Q5T700 205 aa22.02■■□□□ 1.12
COL7A1-205ENST00000465238 C20orf194Q5TEA3 1177 aa22.02■■□□□ 1.12
COL7A1-205ENST00000465238 CHMP4BQ9H444 224 aaKnown RBP22.02■■□□□ 1.12
COL7A1-205ENST00000465238 JAG2Q9Y219 1238 aa22.02■■□□□ 1.12
COL7A1-205ENST00000465238 RIPOR2Q9Y4F9 1068 aa22.02■■□□□ 1.12
COL7A1-205ENST00000465238 TM4SF4P48230 202 aa22.01■■□□□ 1.11
COL7A1-205ENST00000465238 FAM84BQ96KN1 310 aaPredicted RBP22.01■■□□□ 1.11
COL7A1-205ENST00000465238 PRMT6Q96LA8 375 aaPredicted RBP22.01■■□□□ 1.11
COL7A1-205ENST00000465238 ANGEL1Q9UNK9 670 aaKnown RBP22.01■■□□□ 1.11
COL7A1-205ENST00000465238 PCDHAC2Q9Y5I4 1007 aa22.01■■□□□ 1.11
COL7A1-205ENST00000465238 GYG1P46976 350 aa22■■□□□ 1.11
COL7A1-205ENST00000465238 SREBF2Q12772 1141 aa22■■□□□ 1.11
COL7A1-205ENST00000465238 MFSD14BQ5SR56 506 aa22■■□□□ 1.11
COL7A1-205ENST00000465238 CLRN2A0PK11 232 aa21.99■■□□□ 1.11
COL7A1-205ENST00000465238 PPP1R12BO60237 982 aaPredicted RBP21.99■■□□□ 1.11
COL7A1-205ENST00000465238 RBM5P52756 815 aaKnown RBP eCLIP21.99■■□□□ 1.11
COL7A1-205ENST00000465238 MAP3K11Q16584 847 aa21.99■■□□□ 1.11
COL7A1-205ENST00000465238 SUPT20HL1Q3ZLR7 823 aa21.99■■□□□ 1.11
COL7A1-205ENST00000465238 ARAP2Q8WZ64 1704 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms