RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 CSF1RP07333 972 aa21.75■■□□□ 1.07
CPSF4-209ENST00000465132 RASAL3Q86YV0 1011 aa21.75■■□□□ 1.07
CPSF4-209ENST00000465132 OGFOD1Q8N543 542 aa21.75■■□□□ 1.07
CPSF4-209ENST00000465132 ANKRD2Q9GZV1 360 aa21.75■■□□□ 1.07
CPSF4-209ENST00000465132 USP44Q9H0E7 712 aa21.75■■□□□ 1.07
CPSF4-209ENST00000465132 SPEF2Q9C093 1822 aa21.75■■□□□ 1.07
CPSF4-209ENST00000465132 ZNF804BA4D1E1 1349 aa21.75■■□□□ 1.07
CPSF4-209ENST00000465132 MYO3BQ8WXR4 1341 aa21.75■■□□□ 1.07
CPSF4-209ENST00000465132 NEFLP07196 543 aa21.74■■□□□ 1.07
CPSF4-209ENST00000465132 REM2Q8IYK8 340 aaPredicted RBP21.74■■□□□ 1.07
CPSF4-209ENST00000465132 MPHOSPH8Q99549 860 aa21.74■■□□□ 1.07
CPSF4-209ENST00000465132 COG6Q9Y2V7 657 aa21.74■■□□□ 1.07
CPSF4-209ENST00000465132 PAPPA2Q9BXP8 1791 aa21.74■■□□□ 1.07
CPSF4-209ENST00000465132 WNT10BO00744 389 aa21.73■■□□□ 1.07
CPSF4-209ENST00000465132 GNAI2P04899 355 aa21.73■■□□□ 1.07
CPSF4-209ENST00000465132 RLBP1P12271 317 aa21.73■■□□□ 1.07
CPSF4-209ENST00000465132 KLRK1P26718 216 aa21.73■■□□□ 1.07
CPSF4-209ENST00000465132 MLLT1Q03111 559 aaPredicted RBP21.73■■□□□ 1.07
CPSF4-209ENST00000465132 PRAMEF18Q5VWM3 479 aa21.72■■□□□ 1.07
CPSF4-209ENST00000465132 MOB2Q70IA6 237 aa21.72■■□□□ 1.07
CPSF4-209ENST00000465132 ZNF646O15015 1829 aaPredicted RBP21.71■■□□□ 1.07
CPSF4-209ENST00000465132 NBPF7P0C2Y1 421 aaPredicted RBP21.71■■□□□ 1.07
CPSF4-209ENST00000465132 MMP14P50281 582 aa21.71■■□□□ 1.07
CPSF4-209ENST00000465132 TTLL5Q6EMB2 1281 aa21.71■■□□□ 1.07
CPSF4-209ENST00000465132 TNNQ9UQP3 1299 aa21.71■■□□□ 1.07
CPSF4-209ENST00000465132 UBE2Q2LH0YL09 131 aa21.7■■□□□ 1.06
CPSF4-209ENST00000465132 ZBTB7BO15156 539 aaPredicted RBP21.7■■□□□ 1.06
CPSF4-209ENST00000465132 CHRNDQ07001 517 aa21.7■■□□□ 1.06
CPSF4-209ENST00000465132 ANKRD18BA2A2Z9 1011 aa21.69■■□□□ 1.06
CPSF4-209ENST00000465132 SASH1O94885 1247 aa21.69■■□□□ 1.06
CPSF4-209ENST00000465132 KCNJ4P48050 445 aa21.69■■□□□ 1.06
CPSF4-209ENST00000465132 MEIS3Q99687 375 aa21.69■■□□□ 1.06
CPSF4-209ENST00000465132 GTF2IP78347 998 aa21.68■■□□□ 1.06
CPSF4-209ENST00000465132 C20orf194Q5TEA3 1177 aa21.68■■□□□ 1.06
CPSF4-209ENST00000465132 KIAA0825Q8IV33 1275 aa21.68■■□□□ 1.06
CPSF4-209ENST00000465132 NF2P35240 595 aa21.67■■□□□ 1.06
CPSF4-209ENST00000465132 FOXO4P98177 505 aa21.67■■□□□ 1.06
CPSF4-209ENST00000465132 TTLL12Q14166 644 aaPredicted RBP21.67■■□□□ 1.06
CPSF4-209ENST00000465132 CD209Q9NNX6 404 aa21.67■■□□□ 1.06
CPSF4-209ENST00000465132 HDAC9Q9UKV0 1011 aa21.67■■□□□ 1.06
CPSF4-209ENST00000465132 AKAP11Q9UKA4 1901 aa21.67■■□□□ 1.06
CPSF4-209ENST00000465132 IRS2Q9Y4H2 1338 aa21.66■■□□□ 1.06
CPSF4-209ENST00000465132 SNAP23O00161 211 aa21.66■■□□□ 1.06
CPSF4-209ENST00000465132 IFIT5Q13325 482 aaKnown RBP21.66■■□□□ 1.06
CPSF4-209ENST00000465132 CCDC57Q2TAC2 916 aa21.66■■□□□ 1.06
CPSF4-209ENST00000465132 SUCLG2Q96I99 432 aa21.66■■□□□ 1.06
CPSF4-209ENST00000465132 ZBED3Q96IU2 234 aaPredicted RBP21.66■■□□□ 1.06
CPSF4-209ENST00000465132 TAF5LO75529 589 aa21.65■■□□□ 1.06
CPSF4-209ENST00000465132 RABL6Q3YEC7 729 aaPredicted RBP21.65■■□□□ 1.06
CPSF4-209ENST00000465132 C15orf52Q6ZUT6 534 aaKnown RBP21.65■■□□□ 1.06
CPSF4-209ENST00000465132 APOBEC3FQ8IUX4 373 aaKnown RBP21.65■■□□□ 1.06
CPSF4-209ENST00000465132 ZBTB40Q9NUA8 1239 aa21.65■■□□□ 1.06
CPSF4-209ENST00000465132 CHMP3Q9Y3E7 222 aa21.65■■□□□ 1.06
CPSF4-209ENST00000465132 LRRFIP2Q9Y608 721 aaKnown RBP21.65■■□□□ 1.06
CPSF4-209ENST00000465132 LMBR1LQ6UX01 489 aa21.64■■□□□ 1.05
CPSF4-209ENST00000465132 CTU1Q7Z7A3 348 aaKnown RBP21.64■■□□□ 1.05
CPSF4-209ENST00000465132 RPAP2Q8IXW5 612 aaPredicted RBP21.64■■□□□ 1.05
CPSF4-209ENST00000465132 HELBQ8NG08 1087 aaPredicted RBP21.64■■□□□ 1.05
CPSF4-209ENST00000465132 BICC1Q9H694 974 aaKnown RBP21.64■■□□□ 1.05
CPSF4-209ENST00000465132 HMMRO75330 724 aa21.63■■□□□ 1.05
CPSF4-209ENST00000465132 TAF7LQ5H9L4 462 aa21.63■■□□□ 1.05
CPSF4-209ENST00000465132 CERS5Q8N5B7 392 aa21.63■■□□□ 1.05
CPSF4-209ENST00000465132 CRBNQ96SW2 442 aa21.63■■□□□ 1.05
CPSF4-209ENST00000465132 TM4SF4P48230 202 aa21.62■■□□□ 1.05
CPSF4-209ENST00000465132 MTX1Q13505 466 aa21.62■■□□□ 1.05
CPSF4-209ENST00000465132 ARMC9Q7Z3E5 817 aa21.62■■□□□ 1.05
CPSF4-209ENST00000465132 IL1R1P14778 569 aa21.61■■□□□ 1.05
CPSF4-209ENST00000465132 PTPN12Q05209 780 aaKnown RBP21.61■■□□□ 1.05
CPSF4-209ENST00000465132 PRKG1Q13976 671 aa21.61■■□□□ 1.05
CPSF4-209ENST00000465132 DLGAP5Q15398 846 aa21.61■■□□□ 1.05
CPSF4-209ENST00000465132 EPHA10Q5JZY3 1008 aa21.61■■□□□ 1.05
CPSF4-209ENST00000465132 MTMR14Q8NCE2 650 aa21.61■■□□□ 1.05
CPSF4-209ENST00000465132 TBC1D8O95759 1140 aa21.6■■□□□ 1.05
CPSF4-209ENST00000465132 MKRN3Q13064 507 aaKnown RBP21.6■■□□□ 1.05
CPSF4-209ENST00000465132 LDLRAD1Q5T700 205 aa21.6■■□□□ 1.05
CPSF4-209ENST00000465132 ZNF804AQ7Z570 1209 aa21.6■■□□□ 1.05
CPSF4-209ENST00000465132 DEFB129Q9H1M3 183 aa21.6■■□□□ 1.05
CPSF4-209ENST00000465132 COL1A1P02452 1464 aaPredicted RBP21.59■■□□□ 1.05
CPSF4-209ENST00000465132 SRGAP3O43295 1099 aa21.59■■□□□ 1.05
CPSF4-209ENST00000465132 KAZALD1Q96I82 304 aa21.59■■□□□ 1.05
CPSF4-209ENST00000465132 ZNF594Q96JF6 807 aaPredicted RBP21.59■■□□□ 1.05
CPSF4-209ENST00000465132 FBXO3Q9UK99 471 aa21.59■■□□□ 1.05
CPSF4-209ENST00000465132 FKBP1AP62942 108 aaKnown RBP21.58■■□□□ 1.05
CPSF4-209ENST00000465132 ATP8B2P98198 1209 aa21.58■■□□□ 1.05
CPSF4-209ENST00000465132 SREBF2Q12772 1141 aa21.58■■□□□ 1.05
CPSF4-209ENST00000465132 ERICH6BQ5W0A0 696 aa21.58■■□□□ 1.05
CPSF4-209ENST00000465132 LDHAL6AQ6ZMR3 332 aa21.58■■□□□ 1.05
CPSF4-209ENST00000465132 ANKRD44Q8N8A2 993 aa21.58■■□□□ 1.05
CPSF4-209ENST00000465132 ZNF296Q8WUU4 475 aaPredicted RBP21.58■■□□□ 1.05
CPSF4-209ENST00000465132 ANGEL1Q9UNK9 670 aaKnown RBP21.58■■□□□ 1.05
CPSF4-209ENST00000465132 PCDHAC2Q9Y5I4 1007 aa21.58■■□□□ 1.05
CPSF4-209ENST00000465132 F8W031 263 aaPredicted RBP21.57■■□□□ 1.04
CPSF4-209ENST00000465132 SOX10P56693 466 aa21.57■■□□□ 1.04
CPSF4-209ENST00000465132 NOM1Q5C9Z4 860 aaKnown RBP21.57■■□□□ 1.04
CPSF4-209ENST00000465132 A0A1B0GUL6 1792 aa21.56■■□□□ 1.04
CPSF4-209ENST00000465132 CFAP100Q494V2 611 aa21.56■■□□□ 1.04
CPSF4-209ENST00000465132 SPRYD7Q5W111 196 aa21.56■■□□□ 1.04
CPSF4-209ENST00000465132 CNNM1Q9NRU3 951 aa21.56■■□□□ 1.04
CPSF4-209ENST00000465132 FZD1Q9UP38 647 aa21.56■■□□□ 1.04
CPSF4-209ENST00000465132 PPP2R3BQ9Y5P8 575 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms