RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 ALDH8A1Q9H2A2 487 aaPredicted RBP12.06□□□□□ -0.48
PTPRE-205ENST00000463727 TAF6LQ9Y6J9 622 aa12.06□□□□□ -0.48
PTPRE-205ENST00000463727 U2AF2P26368 475 aaKnown RBP eCLIP12.06□□□□□ -0.48
PTPRE-205ENST00000463727 PDIA3P30101 505 aaKnown RBP12.06□□□□□ -0.48
PTPRE-205ENST00000463727 TMEM67Q5HYA8 995 aa12.06□□□□□ -0.48
PTPRE-205ENST00000463727 CCDC102BQ68D86 513 aa12.06□□□□□ -0.48
PTPRE-205ENST00000463727 TTLL7Q6ZT98 887 aa12.06□□□□□ -0.48
PTPRE-205ENST00000463727 VPS37DQ86XT2 251 aa12.06□□□□□ -0.48
PTPRE-205ENST00000463727 CACTINQ8WUQ7 758 aaKnown RBP12.06□□□□□ -0.48
PTPRE-205ENST00000463727 TRMT112Q9UI30 125 aaKnown RBP12.06□□□□□ -0.48
PTPRE-205ENST00000463727 UBASH3AP57075 661 aa12.06□□□□□ -0.48
PTPRE-205ENST00000463727 LRRC24Q50LG9 513 aa12.06□□□□□ -0.48
PTPRE-205ENST00000463727 MRFAP1L1Q96HT8 127 aa12.06□□□□□ -0.48
PTPRE-205ENST00000463727 ZBTB43O43298 467 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 ZMYM1Q5SVZ6 1142 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 TEX35Q5T0J7 233 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 ADALQ6DHV7 355 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 ANKRD20A12PQ8NF67 263 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 APPBP2Q92624 585 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 DDX17Q92841 729 aaKnown RBP12.05□□□□□ -0.48
PTPRE-205ENST00000463727 XAGE2Q96GT9 111 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 KAZALD1Q96I82 304 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 FEZ1Q99689 392 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 AKAP12Q02952 1782 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 URI1O94763 535 aaPredicted RBP12.05□□□□□ -0.48
PTPRE-205ENST00000463727 MAP3K12Q12852 859 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 LRRC8AQ8IWT6 810 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 FAM89AQ96GI7 184 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 SSRP1Q08945 709 aaKnown RBP12.05□□□□□ -0.48
PTPRE-205ENST00000463727 UBAC1Q9BSL1 405 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 SLC26A6Q9BXS9 759 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 BRMS1Q9HCU9 246 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 SLU7O95391 586 aaKnown RBP12.05□□□□□ -0.48
PTPRE-205ENST00000463727 ANO1Q5XXA6 986 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 TEX13AQ9BXU3 409 aaPredicted RBP12.05□□□□□ -0.48
PTPRE-205ENST00000463727 PCDHA7Q9UN72 937 aa12.05□□□□□ -0.48
PTPRE-205ENST00000463727 SH3TC1Q8TE82 1336 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 ZSCAN12O43309 604 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 C11orf57Q6ZUT1 292 aaPredicted RBP12.04□□□□□ -0.48
PTPRE-205ENST00000463727 FUCA2Q9BTY2 467 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 GPAA1O43292 621 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 ZNF202O95125 648 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 YEATS4O95619 227 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 RXRAP19793 462 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 KIAA1468Q9P260 1216 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 LRP2BPQ9P2M1 347 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 MED23Q9ULK4 1368 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 TSR1Q2NL82 804 aaKnown RBP12.04□□□□□ -0.48
PTPRE-205ENST00000463727 SLFNL1Q499Z3 407 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 FILIP1LQ4L180 1135 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 KCNF1Q9H3M0 494 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 GPR108Q9NPR9 543 aa12.04□□□□□ -0.48
PTPRE-205ENST00000463727 UTYO14607 1347 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 A0A087WWV3 80 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 CCDC196A0A1B0GTZ2 297 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 MYSM1Q5VVJ2 828 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 USPL1Q5W0Q7 1092 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 MAST3O60307 1309 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 ZAP70P43403 619 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 PPFIBP1Q86W92 1011 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 FGAP02671 866 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 CHGBP05060 677 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 ANGEL1Q9UNK9 670 aaKnown RBP12.03□□□□□ -0.48
PTPRE-205ENST00000463727 CEP131Q9UPN4 1083 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 PCDH11XQ9BZA7 1347 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 PCDH11YQ9BZA8 1340 aa12.03□□□□□ -0.48
PTPRE-205ENST00000463727 ST3GAL1Q11201 340 aa12.02□□□□□ -0.48
PTPRE-205ENST00000463727 PDIA6Q15084 440 aa12.02□□□□□ -0.48
PTPRE-205ENST00000463727 FBXO18Q8NFZ0 1043 aa12.02□□□□□ -0.48
PTPRE-205ENST00000463727 PUS3Q9BZE2 481 aaKnown RBP12.02□□□□□ -0.48
PTPRE-205ENST00000463727 OGFRQ9NZT2 677 aa12.02□□□□□ -0.48
PTPRE-205ENST00000463727 IMPACTQ9P2X3 320 aa12.02□□□□□ -0.48
PTPRE-205ENST00000463727 DNAI1Q9UI46 699 aa12.02□□□□□ -0.48
PTPRE-205ENST00000463727 CDC25BP30305 580 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 GPS2Q13227 327 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 HSP90AA4PQ58FG1 418 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 SYT10Q6XYQ8 523 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 GTPBP4Q9BZE4 634 aaKnown RBP12.02□□□□□ -0.49
PTPRE-205ENST00000463727 RTEL1Q9NZ71 1219 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 TOPAZ1Q8N9V7 1692 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 IGSF3O75054 1194 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 UQCRFS1P1P0C7P4 283 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 NDUFA8P51970 172 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 TMCO3Q6UWJ1 677 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 MFSD6Q6ZSS7 791 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 ZNF397Q8NF99 534 aaPredicted RBP12.02□□□□□ -0.49
PTPRE-205ENST00000463727 ABCF2Q9UG63 623 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 CARMIL3Q8ND23 1372 aa12.02□□□□□ -0.49
PTPRE-205ENST00000463727 MINDY4BA8MYZ0 360 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 IL2RBP14784 551 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 KRT222Q8N1A0 295 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 XPO4Q9C0E2 1151 aaKnown RBP12.01□□□□□ -0.49
PTPRE-205ENST00000463727 CCDC66A2RUB6 948 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 SLC5A1P13866 664 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 MYL5Q02045 173 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 PLA2G4DQ86XP0 818 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 SMARCC2Q8TAQ2 1214 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 ERO1AQ96HE7 468 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 CLIC4Q9Y696 253 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 A0A1W2PQ27 194 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms