RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 GMLQ99445 158 aa28.17■■■□□ 2.1
CCDC28B-203ENST00000461819 GNL3LQ9NVN8 582 aaKnown RBP28.17■■■□□ 2.1
CCDC28B-203ENST00000461819 CLEC11AQ9Y240 323 aa28.17■■■□□ 2.1
CCDC28B-203ENST00000461819 USP17L8P0C7I0 530 aa28.16■■■□□ 2.1
CCDC28B-203ENST00000461819 GORABQ5T7V8 394 aa28.16■■■□□ 2.1
CCDC28B-203ENST00000461819 LDHDQ86WU2 507 aa28.16■■■□□ 2.1
CCDC28B-203ENST00000461819 SMC1BQ8NDV3 1235 aa28.16■■■□□ 2.1
CCDC28B-203ENST00000461819 XAGE2Q96GT9 111 aa28.16■■■□□ 2.1
CCDC28B-203ENST00000461819 FAM205AQ6ZU69 1335 aa28.16■■■□□ 2.1
CCDC28B-203ENST00000461819 APBB1O00213 710 aa28.15■■■□□ 2.1
CCDC28B-203ENST00000461819 TNNI3KQ59H18 835 aa28.15■■■□□ 2.1
CCDC28B-203ENST00000461819 GPR108Q9NPR9 543 aa28.15■■■□□ 2.1
CCDC28B-203ENST00000461819 FPGT-TNNI3KV9GXZ4 949 aa28.15■■■□□ 2.1
CCDC28B-203ENST00000461819 PHKA1P46020 1223 aa28.14■■■□□ 2.1
CCDC28B-203ENST00000461819 C1QTNF8P60827 252 aa28.14■■■□□ 2.1
CCDC28B-203ENST00000461819 OGFOD1Q8N543 542 aa28.14■■■□□ 2.1
CCDC28B-203ENST00000461819 FKBP1AP62942 108 aaKnown RBP28.13■■■□□ 2.09
CCDC28B-203ENST00000461819 TBC1D10BQ4KMP7 808 aaPredicted RBP28.13■■■□□ 2.09
CCDC28B-203ENST00000461819 MFSD14BQ5SR56 506 aa28.13■■■□□ 2.09
CCDC28B-203ENST00000461819 CCDC102BQ68D86 513 aa28.13■■■□□ 2.09
CCDC28B-203ENST00000461819 SAMD7Q7Z3H4 446 aa28.13■■■□□ 2.09
CCDC28B-203ENST00000461819 KIAA0825Q8IV33 1275 aa28.13■■■□□ 2.09
CCDC28B-203ENST00000461819 CERS5Q8N5B7 392 aa28.13■■■□□ 2.09
CCDC28B-203ENST00000461819 TRPM4Q8TD43 1214 aa28.13■■■□□ 2.09
CCDC28B-203ENST00000461819 RBM26Q5T8P6 1007 aaKnown RBP28.12■■■□□ 2.09
CCDC28B-203ENST00000461819 CHADLQ6NUI6 762 aa28.12■■■□□ 2.09
CCDC28B-203ENST00000461819 HDAC9Q9UKV0 1011 aa28.12■■■□□ 2.09
CCDC28B-203ENST00000461819 PCDHB15Q9Y5E8 787 aa28.12■■■□□ 2.09
CCDC28B-203ENST00000461819 ZNF280AP59817 542 aaPredicted RBP28.11■■■□□ 2.09
CCDC28B-203ENST00000461819 FSTL1Q12841 308 aa28.11■■■□□ 2.09
CCDC28B-203ENST00000461819 AAMPQ13685 434 aa28.11■■■□□ 2.09
CCDC28B-203ENST00000461819 KIF4BQ2VIQ3 1234 aa28.11■■■□□ 2.09
CCDC28B-203ENST00000461819 RHPN1Q8TCX5 695 aa28.11■■■□□ 2.09
CCDC28B-203ENST00000461819 COL1A1P02452 1464 aaPredicted RBP28.1■■■□□ 2.09
CCDC28B-203ENST00000461819 F8W031 263 aaPredicted RBP28.1■■■□□ 2.09
CCDC28B-203ENST00000461819 RAB11FIP3O75154 756 aa28.1■■■□□ 2.09
CCDC28B-203ENST00000461819 EXOC6Q8TAG9 804 aa28.1■■■□□ 2.09
CCDC28B-203ENST00000461819 TBC1D22AQ8WUA7 517 aa28.1■■■□□ 2.09
CCDC28B-203ENST00000461819 KIF1BPQ96EK5 621 aa28.1■■■□□ 2.09
CCDC28B-203ENST00000461819 MYOZ2Q9NPC6 264 aa28.1■■■□□ 2.09
CCDC28B-203ENST00000461819 SEMA3EO15041 775 aa28.09■■■□□ 2.09
CCDC28B-203ENST00000461819 EGFRP00533 1210 aa28.09■■■□□ 2.09
CCDC28B-203ENST00000461819 IL1RAPL2Q9NP60 686 aa28.09■■■□□ 2.09
CCDC28B-203ENST00000461819 DENND2AQ9ULE3 1009 aa28.09■■■□□ 2.09
CCDC28B-203ENST00000461819 MMP14P50281 582 aa28.08■■■□□ 2.09
CCDC28B-203ENST00000461819 IRX6P78412 446 aaPredicted RBP28.08■■■□□ 2.09
CCDC28B-203ENST00000461819 BCL11AQ9H165 835 aa28.08■■■□□ 2.09
CCDC28B-203ENST00000461819 HIRAP54198 1017 aaPredicted RBP28.07■■■□□ 2.08
CCDC28B-203ENST00000461819 AACSQ86V21 672 aa28.07■■■□□ 2.08
CCDC28B-203ENST00000461819 WDR66Q8TBY9 1149 aa28.07■■■□□ 2.08
CCDC28B-203ENST00000461819 DBNDD2Q9BQY9 259 aa28.07■■■□□ 2.08
CCDC28B-203ENST00000461819 RASGRF1Q13972 1273 aa28.06■■■□□ 2.08
CCDC28B-203ENST00000461819 MAP1SQ66K74 1059 aaPredicted RBP28.06■■■□□ 2.08
CCDC28B-203ENST00000461819 CLASRPQ8N2M8 674 aaKnown RBP28.06■■■□□ 2.08
CCDC28B-203ENST00000461819 EAF2Q96CJ1 260 aaPredicted RBP28.06■■■□□ 2.08
CCDC28B-203ENST00000461819 CCDC8Q9H0W5 538 aaPredicted RBP28.06■■■□□ 2.08
CCDC28B-203ENST00000461819 ECM29Q5VYK3 1845 aa28.06■■■□□ 2.08
CCDC28B-203ENST00000461819 POLR2AP24928 1970 aaKnown RBP28.05■■■□□ 2.08
CCDC28B-203ENST00000461819 CCDC158Q5M9N0 1113 aa28.05■■■□□ 2.08
CCDC28B-203ENST00000461819 TTC39AQ5SRH9 613 aa28.05■■■□□ 2.08
CCDC28B-203ENST00000461819 DBNLQ9UJU6 430 aaKnown RBP28.05■■■□□ 2.08
CCDC28B-203ENST00000461819 TTF2Q9UNY4 1162 aaKnown RBP28.05■■■□□ 2.08
CCDC28B-203ENST00000461819 UQCRFS1P1P0C7P4 283 aa28.04■■■□□ 2.08
CCDC28B-203ENST00000461819 ZC3H15Q8WU90 426 aaKnown RBP28.04■■■□□ 2.08
CCDC28B-203ENST00000461819 LRRCC1Q9C099 1032 aa28.04■■■□□ 2.08
CCDC28B-203ENST00000461819 TLR7Q9NYK1 1049 aaKnown RBP28.04■■■□□ 2.08
CCDC28B-203ENST00000461819 ARID4AP29374 1257 aaPredicted RBP28.03■■■□□ 2.08
CCDC28B-203ENST00000461819 DCTPP1Q9H773 170 aa28.03■■■□□ 2.08
CCDC28B-203ENST00000461819 PDS5AQ29RF7 1337 aaKnown RBP28.02■■■□□ 2.08
CCDC28B-203ENST00000461819 ZBTB22O15209 634 aa28.02■■■□□ 2.08
CCDC28B-203ENST00000461819 SCARF1Q14162 830 aa28.02■■■□□ 2.08
CCDC28B-203ENST00000461819 CNTROBQ8N137 903 aa28.02■■■□□ 2.08
CCDC28B-203ENST00000461819 AKAP11Q9UKA4 1901 aa28.02■■■□□ 2.08
CCDC28B-203ENST00000461819 IFIT2P09913 472 aaKnown RBP28.01■■■□□ 2.07
CCDC28B-203ENST00000461819 RBM5P52756 815 aaKnown RBP eCLIP28.01■■■□□ 2.07
CCDC28B-203ENST00000461819 DLGAP5Q15398 846 aa28.01■■■□□ 2.07
CCDC28B-203ENST00000461819 GRIK5Q16478 980 aa28.01■■■□□ 2.07
CCDC28B-203ENST00000461819 GGA3Q9NZ52 723 aa28.01■■■□□ 2.07
CCDC28B-203ENST00000461819 SUGT1Q9Y2Z0 365 aa28.01■■■□□ 2.07
CCDC28B-203ENST00000461819 MAST3O60307 1309 aa28■■■□□ 2.07
CCDC28B-203ENST00000461819 ZGPATQ8N5A5 531 aaKnown RBP28■■■□□ 2.07
CCDC28B-203ENST00000461819 SPATA5Q8NB90 893 aa28■■■□□ 2.07
CCDC28B-203ENST00000461819 DCPSQ96C86 337 aaKnown RBP28■■■□□ 2.07
CCDC28B-203ENST00000461819 HMG20BQ9P0W2 317 aa28■■■□□ 2.07
CCDC28B-203ENST00000461819 PGAP2Q9UHJ9 254 aa28■■■□□ 2.07
CCDC28B-203ENST00000461819 SALL1Q9NSC2 1324 aa27.99■■■□□ 2.07
CCDC28B-203ENST00000461819 NBPF9Q3BBW0 867 aa27.99■■■□□ 2.07
CCDC28B-203ENST00000461819 CFAP100Q494V2 611 aa27.99■■■□□ 2.07
CCDC28B-203ENST00000461819 TRPM7Q96QT4 1865 aa27.99■■■□□ 2.07
CCDC28B-203ENST00000461819 ASTN2O75129 1339 aaPredicted RBP27.98■■■□□ 2.07
CCDC28B-203ENST00000461819 WNT10BO00744 389 aa27.98■■■□□ 2.07
CCDC28B-203ENST00000461819 SMARCA5O60264 1052 aaPredicted RBP27.98■■■□□ 2.07
CCDC28B-203ENST00000461819 LDHBP07195 334 aaKnown RBP27.98■■■□□ 2.07
CCDC28B-203ENST00000461819 MCAMP43121 646 aa27.98■■■□□ 2.07
CCDC28B-203ENST00000461819 HDAC1Q13547 482 aaPredicted RBP27.98■■■□□ 2.07
CCDC28B-203ENST00000461819 PI16Q6UXB8 463 aa27.98■■■□□ 2.07
CCDC28B-203ENST00000461819 ABCF2Q9UG63 623 aa27.98■■■□□ 2.07
CCDC28B-203ENST00000461819 SERPINA10Q9UK55 444 aa27.98■■■□□ 2.07
CCDC28B-203ENST00000461819 ANGEL2Q5VTE6 544 aaKnown RBP27.97■■■□□ 2.07
CCDC28B-203ENST00000461819 MYH2Q9UKX2 1941 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms