RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MYCBPQ99417 103 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 RRAGDQ9NQL2 400 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 CROCC2H7BZ55 1655 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 ADGRL2O95490 1459 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 SYNRGQ9UMZ2 1314 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 PPP1R12BO60237 982 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 MYCP01106 439 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 CD151P48509 253 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 GDF10P55107 478 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 DNM1Q05193 864 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 RBL2Q08999 1139 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 USP48Q86UV5 1035 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 THEMISQ8N1K5 641 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 TRIM52Q96A61 297 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 ARPC5LQ9BPX5 153 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 RANBP17Q9H2T7 1088 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 QTRT2Q9H974 415 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 CYLDQ9NQC7 956 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 FBXO9Q9UK97 447 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 FAN1Q9Y2M0 1017 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 EIF3JO75822 258 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 MZF1P28698 734 aaPredicted RBP5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 GNA15P30679 374 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 ICE2Q659A1 982 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 ZNF511Q8NB15 262 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 CITED4Q96RK1 184 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 FAM135BQ49AJ0 1406 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 SHPRHQ149N8 1683 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 COL16A1Q07092 1604 aaPredicted RBP5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 A6NHS1 94 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 ERVH48-1M5A8F1 160 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 NGLY1Q96IV0 654 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 PCDH10Q9P2E7 1040 aa5.82□□□□□ -1.48
CCDC88A-209ENST00000456975 ROCK1Q13464 1354 aa5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 PAX7P23759 505 aa5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 PI16Q6UXB8 463 aa5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 KCTD15Q96SI1 283 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 OSBPL2Q9H1P3 480 aa5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 ETNK1Q9HBU6 452 aa5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 SRA1Q9HD15 236 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 ABCF2Q9UG63 623 aa5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 SCAF11Q99590 1463 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 DUOX2Q9NRD8 1548 aa5.81□□□□□ -1.48
CCDC88A-209ENST00000456975 CCDC189A1A4V9 331 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 PPP1R12AO14974 1030 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 ZNF853P0CG23 659 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 SH3PXD2AQ5TCZ1 1133 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 MEI1Q5TIA1 1274 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 ALKBH8Q96BT7 664 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 CRELD1Q96HD1 420 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 SENP7Q9BQF6 1050 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 C2orf49Q9BVC5 232 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 OSBPL3Q9H4L5 887 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 EFCC1Q9HA90 598 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 TMPRSS4Q9NRS4 437 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 USP3Q9Y6I4 520 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 LRP6O75581 1613 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 ANKRD30AQ9BXX3 1397 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 PES1O00541 588 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 ZBTB24O43167 697 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 IGHDP01880 384 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 FLT3P36888 993 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 PEX19P40855 299 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 CDC37Q16543 378 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 HSP90AB2PQ58FF8 381 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 MEX3CQ5U5Q3 659 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 ZNF746Q6NUN9 644 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 ETFBKMTQ8IXQ9 262 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.8□□□□□ -1.487e-12■□□□□ 8.9
CCDC88A-209ENST00000456975 SUDS3Q9H7L9 328 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 RAB6BQ9NRW1 208 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 GGT7Q9UJ14 662 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 KIF15Q9NS87 1388 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 JCADQ9P266 1359 aa5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 KDM5AP29375 1690 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-209ENST00000456975 ERBINQ96RT1 1412 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 OPLAHO14841 1288 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 FGRP09769 529 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 CAPN2P17655 700 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 POU5F1Q01860 360 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 PTPROQ16827 1216 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 MFSD4BQ5TF39 518 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 ALG1LQ6GMV1 187 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 ALKBH2Q6NS38 261 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 SLC9A9Q8IVB4 645 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 C1orf131Q8NDD1 294 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 EDEM1Q92611 657 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 WBP1LQ9NX94 342 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 CWC25Q9NXE8 425 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 MAP3K20Q9NYL2 800 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 AK5Q9Y6K8 562 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 EIF2AK4Q9P2K8 1649 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 hCG_2014768A0A024R1R8 64 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 KLHL33A6NCF5 533 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 SOWAHBA6NEL2 793 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 CBFA2T2O43439 604 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 INHAP05111 366 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 PSMC1P62191 440 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 INTS6LQ5JSJ4 861 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 MTERF4Q7Z6M4 381 aaKnown RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms