RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 DLGAP5Q15398 846 aa19.36■□□□□ 0.69
LIMS1-210ENST00000449684 CDCA5Q96FF9 252 aa19.36■□□□□ 0.69
LIMS1-210ENST00000449684 HHIPL1Q96JK4 782 aa19.36■□□□□ 0.69
LIMS1-210ENST00000449684 FAM84BQ96KN1 310 aaPredicted RBP19.36■□□□□ 0.69
LIMS1-210ENST00000449684 EYA2O00167 538 aa19.35■□□□□ 0.69
LIMS1-210ENST00000449684 IFIT1P09914 478 aaKnown RBP19.35■□□□□ 0.69
LIMS1-210ENST00000449684 RBM5P52756 815 aaKnown RBP eCLIP19.35■□□□□ 0.69
LIMS1-210ENST00000449684 FKBP1AP62942 108 aaKnown RBP19.35■□□□□ 0.69
LIMS1-210ENST00000449684 INTS3Q68E01 1043 aaKnown RBP19.35■□□□□ 0.69
LIMS1-210ENST00000449684 ATF7IPQ6VMQ6 1270 aa19.35■□□□□ 0.69
LIMS1-210ENST00000449684 CLUAP1Q96AJ1 413 aa19.35■□□□□ 0.69
LIMS1-210ENST00000449684 MEIS3Q99687 375 aa19.35■□□□□ 0.69
LIMS1-210ENST00000449684 SIL1Q9H173 461 aa19.35■□□□□ 0.69
LIMS1-210ENST00000449684 MYO1BO43795 1136 aa19.34■□□□□ 0.69
LIMS1-210ENST00000449684 TRIM27P14373 513 aa19.34■□□□□ 0.69
LIMS1-210ENST00000449684 NF2P35240 595 aa19.34■□□□□ 0.69
LIMS1-210ENST00000449684 PTPN12Q05209 780 aaKnown RBP19.34■□□□□ 0.69
LIMS1-210ENST00000449684 PUM3Q15397 648 aaKnown RBP19.34■□□□□ 0.69
LIMS1-210ENST00000449684 CERS5Q8N5B7 392 aa19.34■□□□□ 0.69
LIMS1-210ENST00000449684 TDRD7Q8NHU6 1098 aaKnown RBP19.34■□□□□ 0.69
LIMS1-210ENST00000449684 SCAF8Q9UPN6 1271 aaKnown RBP19.34■□□□□ 0.69
LIMS1-210ENST00000449684 ZBED9Q6R2W3 1325 aa19.33■□□□□ 0.69
LIMS1-210ENST00000449684 FOXN1O15353 648 aa19.33■□□□□ 0.68
LIMS1-210ENST00000449684 AOC2O75106 756 aa19.33■□□□□ 0.68
LIMS1-210ENST00000449684 SLC5A1P13866 664 aa19.33■□□□□ 0.68
LIMS1-210ENST00000449684 MAP2K2P36507 400 aa19.33■□□□□ 0.68
LIMS1-210ENST00000449684 RFX5P48382 616 aaPredicted RBP19.33■□□□□ 0.68
LIMS1-210ENST00000449684 CHAF1AQ13111 956 aaPredicted RBP19.33■□□□□ 0.68
LIMS1-210ENST00000449684 MFSD14BQ5SR56 506 aa19.33■□□□□ 0.68
LIMS1-210ENST00000449684 ZKSCAN2Q63HK3 967 aa19.33■□□□□ 0.68
LIMS1-210ENST00000449684 APOBEC3FQ8IUX4 373 aaKnown RBP19.33■□□□□ 0.68
LIMS1-210ENST00000449684 WBP1LQ9NX94 342 aa19.33■□□□□ 0.68
LIMS1-210ENST00000449684 IQSEC3Q9UPP2 1182 aaPredicted RBP19.33■□□□□ 0.68
LIMS1-210ENST00000449684 FAM205AQ6ZU69 1335 aa19.32■□□□□ 0.68
LIMS1-210ENST00000449684 CTCFP49711 727 aaPredicted RBP19.32■□□□□ 0.68
LIMS1-210ENST00000449684 TTLL12Q14166 644 aaPredicted RBP19.32■□□□□ 0.68
LIMS1-210ENST00000449684 CFAP100Q494V2 611 aa19.32■□□□□ 0.68
LIMS1-210ENST00000449684 COL13A1Q5TAT6 717 aaPredicted RBP19.32■□□□□ 0.68
LIMS1-210ENST00000449684 CEP126Q9P2H0 1117 aa19.32■□□□□ 0.68
LIMS1-210ENST00000449684 FBXO3Q9UK99 471 aa19.32■□□□□ 0.68
LIMS1-210ENST00000449684 ZNF157P51786 506 aaPredicted RBP19.31■□□□□ 0.68
LIMS1-210ENST00000449684 PRAMEF18Q5VWM3 479 aa19.31■□□□□ 0.68
LIMS1-210ENST00000449684 RGMBQ6NW40 437 aa19.31■□□□□ 0.68
LIMS1-210ENST00000449684 FBXO33Q7Z6M2 555 aa19.31■□□□□ 0.68
LIMS1-210ENST00000449684 FTSJ3Q8IY81 847 aaKnown RBP19.31■□□□□ 0.68
LIMS1-210ENST00000449684 VGLL2Q8N8G2 317 aa19.31■□□□□ 0.68
LIMS1-210ENST00000449684 ZNF646O15015 1829 aaPredicted RBP19.3■□□□□ 0.68
LIMS1-210ENST00000449684 CIAO1O76071 339 aa19.3■□□□□ 0.68
LIMS1-210ENST00000449684 BCAMP50895 628 aa19.3■□□□□ 0.68
LIMS1-210ENST00000449684 FKBP1BP68106 108 aa19.3■□□□□ 0.68
LIMS1-210ENST00000449684 NOGQ13253 232 aa19.3■□□□□ 0.68
LIMS1-210ENST00000449684 TBC1D22AQ8WUA7 517 aa19.3■□□□□ 0.68
LIMS1-210ENST00000449684 LPIN2Q92539 896 aa19.3■□□□□ 0.68
LIMS1-210ENST00000449684 CCDC102AQ96A19 550 aa19.3■□□□□ 0.68
LIMS1-210ENST00000449684 TTF2Q9UNY4 1162 aaKnown RBP19.3■□□□□ 0.68
LIMS1-210ENST00000449684 SRGAP3O43295 1099 aa19.29■□□□□ 0.68
LIMS1-210ENST00000449684 GNAI2P04899 355 aa19.29■□□□□ 0.68
LIMS1-210ENST00000449684 IL15P40933 162 aaPredicted RBP19.29■□□□□ 0.68
LIMS1-210ENST00000449684 IFFO2Q5TF58 517 aa19.29■□□□□ 0.68
LIMS1-210ENST00000449684 MTMR14Q8NCE2 650 aa19.29■□□□□ 0.68
LIMS1-210ENST00000449684 TNNQ9UQP3 1299 aa19.29■□□□□ 0.68
LIMS1-210ENST00000449684 ATP2B3Q16720 1220 aa19.28■□□□□ 0.68
LIMS1-210ENST00000449684 ATG9AQ7Z3C6 839 aa19.28■□□□□ 0.68
LIMS1-210ENST00000449684 TNS4Q8IZW8 715 aa19.28■□□□□ 0.68
LIMS1-210ENST00000449684 VEZTQ9HBM0 779 aa19.28■□□□□ 0.68
LIMS1-210ENST00000449684 PA2G4Q9UQ80 394 aaKnown RBP19.28■□□□□ 0.68
LIMS1-210ENST00000449684 CLRN2A0PK11 232 aa19.27■□□□□ 0.68
LIMS1-210ENST00000449684 SPDYE2BA6NHP3 402 aa19.27■□□□□ 0.68
LIMS1-210ENST00000449684 SPDYE6P0CI01 402 aa19.27■□□□□ 0.68
LIMS1-210ENST00000449684 FGFR2P21802 821 aa19.27■□□□□ 0.68
LIMS1-210ENST00000449684 TMEM57Q8N5G2 664 aa19.27■□□□□ 0.68
LIMS1-210ENST00000449684 ZBED3Q96IU2 234 aaPredicted RBP19.27■□□□□ 0.68
LIMS1-210ENST00000449684 COPRSQ9NQ92 184 aa19.27■□□□□ 0.68
LIMS1-210ENST00000449684 GNL3LQ9NVN8 582 aaKnown RBP19.27■□□□□ 0.68
LIMS1-210ENST00000449684 LBX1P52954 281 aa19.26■□□□□ 0.67
LIMS1-210ENST00000449684 PRMT6Q96LA8 375 aaPredicted RBP19.26■□□□□ 0.67
LIMS1-210ENST00000449684 DEFB129Q9H1M3 183 aa19.26■□□□□ 0.67
LIMS1-210ENST00000449684 SERPINA10Q9UK55 444 aa19.26■□□□□ 0.67
LIMS1-210ENST00000449684 PCDHAC2Q9Y5I4 1007 aa19.26■□□□□ 0.67
LIMS1-210ENST00000449684 PRKG1Q13976 671 aa19.25■□□□□ 0.67
LIMS1-210ENST00000449684 ARMC9Q7Z3E5 817 aa19.25■□□□□ 0.67
LIMS1-210ENST00000449684 DZIP1LQ8IYY4 767 aaKnown RBP19.25■□□□□ 0.67
LIMS1-210ENST00000449684 PRDM10Q9NQV6 1147 aa19.25■□□□□ 0.67
LIMS1-210ENST00000449684 UBE2Q2LH0YL09 131 aa19.24■□□□□ 0.67
LIMS1-210ENST00000449684 CA12O43570 354 aa19.24■□□□□ 0.67
LIMS1-210ENST00000449684 CRKP46108 304 aa19.24■□□□□ 0.67
LIMS1-210ENST00000449684 ITPRIPQ8IWB1 547 aa19.24■□□□□ 0.67
LIMS1-210ENST00000449684 PPP2R3BQ9Y5P8 575 aa19.24■□□□□ 0.67
LIMS1-210ENST00000449684 HSPA8P11142 646 aaKnown RBP19.23■□□□□ 0.67
LIMS1-210ENST00000449684 MTX1Q13505 466 aa19.23■□□□□ 0.67
LIMS1-210ENST00000449684 TNFAIP1Q13829 316 aa19.23■□□□□ 0.67
LIMS1-210ENST00000449684 MOB2Q70IA6 237 aa19.23■□□□□ 0.67
LIMS1-210ENST00000449684 WDR66Q8TBY9 1149 aa19.23■□□□□ 0.67
LIMS1-210ENST00000449684 AKAP2Q9Y2D5 859 aa19.23■□□□□ 0.67
LIMS1-210ENST00000449684 PAPPA2Q9BXP8 1791 aa19.23■□□□□ 0.67
LIMS1-210ENST00000449684 MAST3O60307 1309 aa19.23■□□□□ 0.67
LIMS1-210ENST00000449684 COL1A1P02452 1464 aaPredicted RBP19.22■□□□□ 0.67
LIMS1-210ENST00000449684 THSD7BQ9C0I4 1608 aa19.22■□□□□ 0.67
LIMS1-210ENST00000449684 SLC10A3P09131 477 aa19.22■□□□□ 0.67
LIMS1-210ENST00000449684 KIF23Q02241 960 aaPredicted RBP19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms