RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 IL1R1P14778 569 aa16.84■□□□□ 0.29
HMGB3-204ENST00000448905 KLRK1P26718 216 aa16.84■□□□□ 0.29
HMGB3-204ENST00000448905 SOX10P56693 466 aa16.84■□□□□ 0.29
HMGB3-204ENST00000448905 FOXO4P98177 505 aa16.84■□□□□ 0.29
HMGB3-204ENST00000448905 MKRN3Q13064 507 aaKnown RBP16.84■□□□□ 0.29
HMGB3-204ENST00000448905 LDLRAD1Q5T700 205 aa16.84■□□□□ 0.29
HMGB3-204ENST00000448905 MANSC4A6NHS7 340 aaPredicted RBP16.83■□□□□ 0.28
HMGB3-204ENST00000448905 F6X3S4 739 aa16.83■□□□□ 0.28
HMGB3-204ENST00000448905 TNRC18O15417 2968 aaPredicted RBP16.83■□□□□ 0.28
HMGB3-204ENST00000448905 RBM5P52756 815 aaKnown RBP eCLIP16.83■□□□□ 0.28
HMGB3-204ENST00000448905 ZBED3Q96IU2 234 aaPredicted RBP16.83■□□□□ 0.28
HMGB3-204ENST00000448905 AKAP11Q9UKA4 1901 aa16.83■□□□□ 0.28
HMGB3-204ENST00000448905 F8W031 263 aaPredicted RBP16.82■□□□□ 0.28
HMGB3-204ENST00000448905 GRM8O00222 908 aa16.82■□□□□ 0.28
HMGB3-204ENST00000448905 FKTNO75072 461 aa16.82■□□□□ 0.28
HMGB3-204ENST00000448905 CFAP100Q494V2 611 aa16.82■□□□□ 0.28
HMGB3-204ENST00000448905 SPRYD7Q5W111 196 aa16.82■□□□□ 0.28
HMGB3-204ENST00000448905 OTUD7BQ6GQQ9 843 aa16.82■□□□□ 0.28
HMGB3-204ENST00000448905 HPS5Q9UPZ3 1129 aa16.82■□□□□ 0.28
HMGB3-204ENST00000448905 SNAP23O00161 211 aa16.81■□□□□ 0.28
HMGB3-204ENST00000448905 ALDH1L1O75891 902 aa16.81■□□□□ 0.28
HMGB3-204ENST00000448905 ZEB1P37275 1124 aaPredicted RBP16.81■□□□□ 0.28
HMGB3-204ENST00000448905 SLC4A10Q6U841 1118 aa16.81■□□□□ 0.28
HMGB3-204ENST00000448905 CFHR5Q9BXR6 569 aa16.81■□□□□ 0.28
HMGB3-204ENST00000448905 SRCIN1Q9C0H9 1055 aa16.81■□□□□ 0.28
HMGB3-204ENST00000448905 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.81■□□□□ 0.28
HMGB3-204ENST00000448905 ZBTB48P10074 688 aaPredicted RBP16.8■□□□□ 0.28
HMGB3-204ENST00000448905 IREB2P48200 963 aaKnown RBP16.8■□□□□ 0.28
HMGB3-204ENST00000448905 MAP3K11Q16584 847 aa16.8■□□□□ 0.28
HMGB3-204ENST00000448905 CERS5Q8N5B7 392 aa16.8■□□□□ 0.28
HMGB3-204ENST00000448905 VEZTQ9HBM0 779 aa16.8■□□□□ 0.28
HMGB3-204ENST00000448905 SPDYE2BA6NHP3 402 aa16.79■□□□□ 0.28
HMGB3-204ENST00000448905 SPDYE6P0CI01 402 aa16.79■□□□□ 0.28
HMGB3-204ENST00000448905 HIBADHP31937 336 aaKnown RBP16.79■□□□□ 0.28
HMGB3-204ENST00000448905 TNFAIP1Q13829 316 aa16.79■□□□□ 0.28
HMGB3-204ENST00000448905 UBE4AQ14139 1066 aa16.79■□□□□ 0.28
HMGB3-204ENST00000448905 FBXO46Q6PJ61 603 aaPredicted RBP16.79■□□□□ 0.28
HMGB3-204ENST00000448905 PRMT6Q96LA8 375 aaPredicted RBP16.79■□□□□ 0.28
HMGB3-204ENST00000448905 CLRN2A0PK11 232 aa16.78■□□□□ 0.28
HMGB3-204ENST00000448905 VPS37DQ86XT2 251 aa16.78■□□□□ 0.28
HMGB3-204ENST00000448905 ZNF594Q96JF6 807 aaPredicted RBP16.78■□□□□ 0.28
HMGB3-204ENST00000448905 SPEF2Q9C093 1822 aa16.77■□□□□ 0.28
HMGB3-204ENST00000448905 RASA3Q14644 834 aa16.77■□□□□ 0.28
HMGB3-204ENST00000448905 EPHA10Q5JZY3 1008 aa16.77■□□□□ 0.28
HMGB3-204ENST00000448905 IFNL1Q8IU54 200 aa16.77■□□□□ 0.28
HMGB3-204ENST00000448905 ANKRD13AQ8IZ07 590 aa16.77■□□□□ 0.28
HMGB3-204ENST00000448905 FAM9BQ8IZU0 186 aa16.77■□□□□ 0.28
HMGB3-204ENST00000448905 SERPINA10Q9UK55 444 aa16.77■□□□□ 0.28
HMGB3-204ENST00000448905 PSME4Q14997 1843 aa16.77■□□□□ 0.27
HMGB3-204ENST00000448905 FAM205AQ6ZU69 1335 aa16.76■□□□□ 0.27
HMGB3-204ENST00000448905 IRS2Q9Y4H2 1338 aa16.76■□□□□ 0.27
HMGB3-204ENST00000448905 COL1A1P02452 1464 aaPredicted RBP16.76■□□□□ 0.27
HMGB3-204ENST00000448905 FRAT2O75474 233 aaPredicted RBP16.76■□□□□ 0.27
HMGB3-204ENST00000448905 CAVIN4Q5BKX8 364 aa16.76■□□□□ 0.27
HMGB3-204ENST00000448905 MFSD14BQ5SR56 506 aa16.76■□□□□ 0.27
HMGB3-204ENST00000448905 TDRD7Q8NHU6 1098 aaKnown RBP16.76■□□□□ 0.27
HMGB3-204ENST00000448905 PAPPA2Q9BXP8 1791 aa16.76■□□□□ 0.27
HMGB3-204ENST00000448905 MROH5Q6ZUA9 1318 aa16.75■□□□□ 0.27
HMGB3-204ENST00000448905 ZNF316A6NFI3 1004 aaPredicted RBP16.75■□□□□ 0.27
HMGB3-204ENST00000448905 TNNI2P48788 182 aa16.75■□□□□ 0.27
HMGB3-204ENST00000448905 NBPF12Q5TAG4 269 aaPredicted RBP16.75■□□□□ 0.27
HMGB3-204ENST00000448905 TTF2Q9UNY4 1162 aaKnown RBP16.75■□□□□ 0.27
HMGB3-204ENST00000448905 JAG2Q9Y219 1238 aa16.75■□□□□ 0.27
HMGB3-204ENST00000448905 USP2O75604 605 aaPredicted RBP16.74■□□□□ 0.27
HMGB3-204ENST00000448905 WNK4Q96J92 1243 aa16.74■□□□□ 0.27
HMGB3-204ENST00000448905 FAM84BQ96KN1 310 aaPredicted RBP16.74■□□□□ 0.27
HMGB3-204ENST00000448905 SPINK5Q9NQ38 1064 aaPredicted RBP16.74■□□□□ 0.27
HMGB3-204ENST00000448905 FZD1Q9UP38 647 aa16.74■□□□□ 0.27
HMGB3-204ENST00000448905 GYG1P46976 350 aa16.73■□□□□ 0.27
HMGB3-204ENST00000448905 ARHGEF6Q15052 776 aa16.73■□□□□ 0.27
HMGB3-204ENST00000448905 INTS3Q68E01 1043 aaKnown RBP16.73■□□□□ 0.27
HMGB3-204ENST00000448905 TBC1D22AQ8WUA7 517 aa16.73■□□□□ 0.27
HMGB3-204ENST00000448905 ERO1AQ96HE7 468 aa16.73■□□□□ 0.27
HMGB3-204ENST00000448905 CLMNQ96JQ2 1002 aa16.73■□□□□ 0.27
HMGB3-204ENST00000448905 TDRD3Q9H7E2 651 aaKnown RBP16.73■□□□□ 0.27
HMGB3-204ENST00000448905 ZNF70Q9UC06 446 aaPredicted RBP16.73■□□□□ 0.27
HMGB3-204ENST00000448905 PCDHAC2Q9Y5I4 1007 aa16.73■□□□□ 0.27
HMGB3-204ENST00000448905 WDHD1O75717 1129 aaPredicted RBP16.72■□□□□ 0.27
HMGB3-204ENST00000448905 DZIP1LQ8IYY4 767 aaKnown RBP16.72■□□□□ 0.27
HMGB3-204ENST00000448905 R3HDMLQ9H3Y0 253 aa16.72■□□□□ 0.27
HMGB3-204ENST00000448905 RIPOR2Q9Y4F9 1068 aa16.72■□□□□ 0.27
HMGB3-204ENST00000448905 TRIM17Q9Y577 477 aa16.72■□□□□ 0.27
HMGB3-204ENST00000448905 NBPF7P0C2Y1 421 aaPredicted RBP16.71■□□□□ 0.27
HMGB3-204ENST00000448905 HDLBPQ00341 1268 aaKnown RBP16.71■□□□□ 0.27
HMGB3-204ENST00000448905 SPDYE2Q495Y8 402 aa16.71■□□□□ 0.27
HMGB3-204ENST00000448905 METTL24Q5JXM2 366 aa16.71■□□□□ 0.27
HMGB3-204ENST00000448905 PRPF38BQ5VTL8 546 aaKnown RBP16.71■□□□□ 0.27
HMGB3-204ENST00000448905 HOOK2Q96ED9 719 aa16.71■□□□□ 0.27
HMGB3-204ENST00000448905 SUCLG2Q96I99 432 aa16.71■□□□□ 0.27
HMGB3-204ENST00000448905 PUS3Q9BZE2 481 aaKnown RBP16.71■□□□□ 0.27
HMGB3-204ENST00000448905 ZNF646O15015 1829 aaPredicted RBP16.7■□□□□ 0.26
HMGB3-204ENST00000448905 CRKP46108 304 aa16.7■□□□□ 0.26
HMGB3-204ENST00000448905 MAP3K9P80192 1104 aa16.7■□□□□ 0.26
HMGB3-204ENST00000448905 FBXO33Q7Z6M2 555 aa16.7■□□□□ 0.26
HMGB3-204ENST00000448905 MRIQ9BWK5 157 aa16.7■□□□□ 0.26
HMGB3-204ENST00000448905 PCDH10Q9P2E7 1040 aa16.7■□□□□ 0.26
HMGB3-204ENST00000448905 CSADQ9Y600 493 aa16.7■□□□□ 0.26
HMGB3-204ENST00000448905 TESPA1A2RU30 521 aaPredicted RBP16.69■□□□□ 0.26
HMGB3-204ENST00000448905 TCP10L2B9ZVM9 353 aa16.69■□□□□ 0.26
HMGB3-204ENST00000448905 IGF2BP3O00425 579 aaKnown RBP eCLIP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 135.5 ms