RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 TAF7LQ5H9L4 462 aa9.85□□□□□ -0.83
CD44-211ENST00000442151 CCDC85AQ96PX6 553 aaPredicted RBP9.85□□□□□ -0.83
CD44-211ENST00000442151 TRPM7Q96QT4 1865 aa9.85□□□□□ -0.83
CD44-211ENST00000442151 LRRC37AA6NMS7 1700 aa9.85□□□□□ -0.83
CD44-211ENST00000442151 MED23Q9ULK4 1368 aa9.85□□□□□ -0.83
CD44-211ENST00000442151 ZNF609O15014 1411 aa9.85□□□□□ -0.83
CD44-211ENST00000442151 ALDH1L1O75891 902 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 CSF1RP07333 972 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 NF2P35240 595 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 HIRAP54198 1017 aaPredicted RBP9.84□□□□□ -0.83
CD44-211ENST00000442151 ZNF280AP59817 542 aaPredicted RBP9.84□□□□□ -0.83
CD44-211ENST00000442151 CWF19L2Q2TBE0 894 aaKnown RBP9.84□□□□□ -0.83
CD44-211ENST00000442151 STRIP1Q5VSL9 837 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 SAMD7Q7Z3H4 446 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 FAM9BQ8IZU0 186 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 TRPM4Q8TD43 1214 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 JARID2Q92833 1246 aaPredicted RBP9.84□□□□□ -0.83
CD44-211ENST00000442151 GREM2Q9H772 168 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 GBA2Q9HCG7 927 aaPredicted RBP9.84□□□□□ -0.83
CD44-211ENST00000442151 C9orf78Q9NZ63 289 aaPredicted RBP9.84□□□□□ -0.83
CD44-211ENST00000442151 SALL2Q9Y467 1007 aaPredicted RBP9.84□□□□□ -0.83
CD44-211ENST00000442151 PITPNM2Q9BZ72 1349 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 ITGA6P23229 1130 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 BRPF1P55201 1214 aaPredicted RBP9.84□□□□□ -0.83
CD44-211ENST00000442151 HUNKP57058 714 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 GRM1Q13255 1194 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 CCDC57Q2TAC2 916 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 CYP4F22Q6NT55 531 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 RGMBQ6NW40 437 aa9.84□□□□□ -0.83
CD44-211ENST00000442151 LBX1P52954 281 aa9.83□□□□□ -0.84
CD44-211ENST00000442151 G2E3Q7L622 706 aa9.83□□□□□ -0.84
CD44-211ENST00000442151 MYOZ2Q9NPC6 264 aa9.83□□□□□ -0.84
CD44-211ENST00000442151 HDAC5Q9UQL6 1122 aa9.83□□□□□ -0.84
CD44-211ENST00000442151 ZNF804BA4D1E1 1349 aa9.83□□□□□ -0.84
CD44-211ENST00000442151 LTBP1Q14766 1721 aa9.83□□□□□ -0.84
CD44-211ENST00000442151 HSPA8P11142 646 aaKnown RBP9.82□□□□□ -0.84
CD44-211ENST00000442151 SCARF1Q14162 830 aa9.82□□□□□ -0.84
CD44-211ENST00000442151 TTLL5Q6EMB2 1281 aa9.82□□□□□ -0.84
CD44-211ENST00000442151 IRX2Q9BZI1 471 aaPredicted RBP9.82□□□□□ -0.84
CD44-211ENST00000442151 SRCIN1Q9C0H9 1055 aa9.82□□□□□ -0.84
CD44-211ENST00000442151 CHMP3Q9Y3E7 222 aa9.82□□□□□ -0.84
CD44-211ENST00000442151 E9PSI1 815 aa9.82□□□□□ -0.84
CD44-211ENST00000442151 GRM8O00222 908 aa9.82□□□□□ -0.84
CD44-211ENST00000442151 C15orf52Q6ZUT6 534 aaKnown RBP9.82□□□□□ -0.84
CD44-211ENST00000442151 ZNF804AQ7Z570 1209 aa9.82□□□□□ -0.84
CD44-211ENST00000442151 FBXW7Q969H0 707 aa9.82□□□□□ -0.84
CD44-211ENST00000442151 DUOX1Q9NRD9 1551 aa9.81□□□□□ -0.84
CD44-211ENST00000442151 TAF1P21675 1872 aa9.81□□□□□ -0.84
CD44-211ENST00000442151 MYO1BO43795 1136 aa9.81□□□□□ -0.84
CD44-211ENST00000442151 ZNF157P51786 506 aaPredicted RBP9.81□□□□□ -0.84
CD44-211ENST00000442151 FKBP1AP62942 108 aaKnown RBP9.81□□□□□ -0.84
CD44-211ENST00000442151 BEND3Q5T5X7 828 aa9.81□□□□□ -0.84
CD44-211ENST00000442151 GPR153Q6NV75 609 aa9.81□□□□□ -0.84
CD44-211ENST00000442151 SLC51AQ86UW1 340 aa9.81□□□□□ -0.84
CD44-211ENST00000442151 APOBEC3FQ8IUX4 373 aaKnown RBP9.81□□□□□ -0.84
CD44-211ENST00000442151 GMLQ99445 158 aa9.81□□□□□ -0.84
CD44-211ENST00000442151 KCNQ5Q9NR82 932 aa9.81□□□□□ -0.84
CD44-211ENST00000442151 GGA3Q9NZ52 723 aa9.81□□□□□ -0.84
CD44-211ENST00000442151 CASP7P55210 303 aa9.8□□□□□ -0.84
CD44-211ENST00000442151 CHRNDQ07001 517 aa9.8□□□□□ -0.84
CD44-211ENST00000442151 LDHAL6AQ6ZMR3 332 aa9.8□□□□□ -0.84
CD44-211ENST00000442151 CNNM1Q9NRU3 951 aa9.8□□□□□ -0.84
CD44-211ENST00000442151 SAGE1Q9NXZ1 904 aa9.8□□□□□ -0.84
CD44-211ENST00000442151 PTPRCP08575 1304 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 FMR1Q06787 632 aaKnown RBP eCLIP9.79□□□□□ -0.84
CD44-211ENST00000442151 FAM161AQ3B820 660 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 DACT2Q5SW24 774 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 ANGEL2Q5VTE6 544 aaKnown RBP9.79□□□□□ -0.84
CD44-211ENST00000442151 SLC4A10Q6U841 1118 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 ARMC9Q7Z3E5 817 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 CDCA5Q96FF9 252 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 MYH3P11055 1940 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 AOC2O75106 756 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 TTLL12Q14166 644 aaPredicted RBP9.79□□□□□ -0.84
CD44-211ENST00000442151 DLGAP5Q15398 846 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 LMBR1LQ6UX01 489 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 CD209Q9NNX6 404 aa9.79□□□□□ -0.84
CD44-211ENST00000442151 SHTN1A0MZ66 631 aa9.78□□□□□ -0.84
CD44-211ENST00000442151 UNCXA6NJT0 531 aa9.78□□□□□ -0.84
CD44-211ENST00000442151 ADM5C9JUS6 153 aa9.78□□□□□ -0.84
CD44-211ENST00000442151 CT47B1P0C2W7 299 aaPredicted RBP9.78□□□□□ -0.84
CD44-211ENST00000442151 PSEN1P49768 467 aa9.78□□□□□ -0.84
CD44-211ENST00000442151 GTF2IP78347 998 aa9.78□□□□□ -0.84
CD44-211ENST00000442151 FOXO4P98177 505 aa9.78□□□□□ -0.84
CD44-211ENST00000442151 UBE4AQ14139 1066 aa9.78□□□□□ -0.84
CD44-211ENST00000442151 PPP2R3BQ9Y5P8 575 aa9.78□□□□□ -0.84
CD44-211ENST00000442151 MROH5Q6ZUA9 1318 aa9.77□□□□□ -0.84
CD44-211ENST00000442151 F6X3S4 739 aa9.77□□□□□ -0.84
CD44-211ENST00000442151 SUPT20HL1Q3ZLR7 823 aa9.77□□□□□ -0.84
CD44-211ENST00000442151 MTMR14Q8NCE2 650 aa9.77□□□□□ -0.84
CD44-211ENST00000442151 SLC10A3P09131 477 aa9.77□□□□□ -0.85
CD44-211ENST00000442151 PBX2P40425 430 aa9.77□□□□□ -0.85
CD44-211ENST00000442151 KIF23Q02241 960 aaPredicted RBP9.77□□□□□ -0.85
CD44-211ENST00000442151 ALDH1L2Q3SY69 923 aa9.77□□□□□ -0.85
CD44-211ENST00000442151 VPS37DQ86XT2 251 aa9.77□□□□□ -0.85
CD44-211ENST00000442151 WNT10BO00744 389 aa9.76□□□□□ -0.85
CD44-211ENST00000442151 PPP1R12BO60237 982 aaPredicted RBP9.76□□□□□ -0.85
CD44-211ENST00000442151 IL1R1P14778 569 aa9.76□□□□□ -0.85
CD44-211ENST00000442151 INHBEP58166 350 aa9.76□□□□□ -0.85
CD44-211ENST00000442151 CAVIN4Q5BKX8 364 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms