RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 USPL1Q5W0Q7 1092 aa6.17□□□□□ -1.42
VPS41-207ENST00000439468 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.17□□□□□ -1.42
VPS41-207ENST00000439468 RGS22Q8NE09 1264 aa6.17□□□□□ -1.42
VPS41-207ENST00000439468 SSBP4Q9BWG4 385 aaPredicted RBP6.17□□□□□ -1.42
VPS41-207ENST00000439468 LIN7BQ9HAP6 207 aa6.17□□□□□ -1.42
VPS41-207ENST00000439468 SOX13Q9UN79 622 aa6.17□□□□□ -1.42
VPS41-207ENST00000439468 METTL12A8MUP2 240 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 CPNE3O75131 537 aaKnown RBP6.16□□□□□ -1.42
VPS41-207ENST00000439468 H2AFB1P0C5Y9 115 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 H2AFB2P0C5Z0 115 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 C19orf57Q0VDD7 668 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 PRSS36Q5K4E3 855 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 ZMYM1Q5SVZ6 1142 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 TMEM130Q8N3G9 435 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 WNT8BQ93098 351 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 CITED4Q96RK1 184 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 FAM129BQ96TA1 746 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 USP26Q9BXU7 913 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 BHLHE41Q9C0J9 482 aaPredicted RBP6.16□□□□□ -1.42
VPS41-207ENST00000439468 NIF3L1Q9GZT8 377 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 EHD4Q9H223 541 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 OSGEPQ9NPF4 335 aa6.16□□□□□ -1.42
VPS41-207ENST00000439468 SCO2A0A1W2PP80 73 aa6.15□□□□□ -1.42
VPS41-207ENST00000439468 GPR182O15218 404 aa6.15□□□□□ -1.42
VPS41-207ENST00000439468 SART1O43290 800 aaKnown RBP6.15□□□□□ -1.42
VPS41-207ENST00000439468 ADAM11O75078 769 aa6.15□□□□□ -1.42
VPS41-207ENST00000439468 MAPK1P28482 360 aa6.15□□□□□ -1.42
VPS41-207ENST00000439468 GALNT12Q8IXK2 581 aa6.15□□□□□ -1.42
VPS41-207ENST00000439468 CEP41Q9BYV8 373 aa6.15□□□□□ -1.42
VPS41-207ENST00000439468 NPHS2Q9NP85 383 aa6.15□□□□□ -1.42
VPS41-207ENST00000439468 A0A1W2PP55 124 aa6.14□□□□□ -1.43
VPS41-207ENST00000439468 GADD45BO75293 160 aaPredicted RBP6.14□□□□□ -1.43
VPS41-207ENST00000439468 ITGB7P26010 798 aa6.14□□□□□ -1.43
VPS41-207ENST00000439468 GSTM4Q03013 218 aa6.14□□□□□ -1.43
VPS41-207ENST00000439468 HGSNATQ68CP4 663 aa6.14□□□□□ -1.43
VPS41-207ENST00000439468 KIAA1211Q6ZU35 1233 aa6.14□□□□□ -1.43
VPS41-207ENST00000439468 VN1R5Q7Z5H4 357 aa6.14□□□□□ -1.43
VPS41-207ENST00000439468 DZIP1LQ8IYY4 767 aaKnown RBP6.14□□□□□ -1.43
VPS41-207ENST00000439468 DMRTB1Q96MA1 342 aa6.14□□□□□ -1.43
VPS41-207ENST00000439468 RUSC1Q9BVN2 902 aa6.14□□□□□ -1.43
VPS41-207ENST00000439468 A0A096LPE4 126 aa6.13□□□□□ -1.43
VPS41-207ENST00000439468 A0A1W2PPZ6 126 aa6.13□□□□□ -1.43
VPS41-207ENST00000439468 SOX1O00570 391 aaPredicted RBP6.13□□□□□ -1.43
VPS41-207ENST00000439468 EIF1AYO14602 144 aaKnown RBP6.13□□□□□ -1.43
VPS41-207ENST00000439468 FDX2Q6P4F2 183 aa6.13□□□□□ -1.43
VPS41-207ENST00000439468 PRR23CQ6ZRP0 262 aa6.13□□□□□ -1.43
VPS41-207ENST00000439468 UTP4Q969X6 686 aaKnown RBP6.13□□□□□ -1.43
VPS41-207ENST00000439468 ZNF428Q96B54 188 aa6.13□□□□□ -1.43
VPS41-207ENST00000439468 DCTN4Q9UJW0 460 aa6.13□□□□□ -1.43
VPS41-207ENST00000439468 PCDH1Q08174 1060 aa6.12□□□□□ -1.43
VPS41-207ENST00000439468 SPRED3Q2MJR0 410 aa6.12□□□□□ -1.43
VPS41-207ENST00000439468 Q6ZS46 218 aa6.12□□□□□ -1.43
VPS41-207ENST00000439468 CCNJLQ8IV13 435 aa6.12□□□□□ -1.43
VPS41-207ENST00000439468 CSRNP1Q96S65 589 aa6.12□□□□□ -1.43
VPS41-207ENST00000439468 UBL7Q96S82 380 aaPredicted RBP6.12□□□□□ -1.43
VPS41-207ENST00000439468 RBCK1Q9BYM8 510 aa6.12□□□□□ -1.43
VPS41-207ENST00000439468 RNF208Q9H0X6 261 aa6.12□□□□□ -1.43
VPS41-207ENST00000439468 TM4SF5O14894 197 aa6.11□□□□□ -1.43
VPS41-207ENST00000439468 DHX15O43143 795 aaKnown RBP6.11□□□□□ -1.43
VPS41-207ENST00000439468 GAS2O43903 313 aaKnown RBP6.11□□□□□ -1.43
VPS41-207ENST00000439468 ESRRAP11474 423 aaPredicted RBP6.11□□□□□ -1.43
VPS41-207ENST00000439468 GRIA4P48058 902 aa6.11□□□□□ -1.43
VPS41-207ENST00000439468 DNAJC14Q6Y2X3 702 aaPredicted RBP6.11□□□□□ -1.43
VPS41-207ENST00000439468 TMC7Q7Z402 723 aa6.11□□□□□ -1.43
VPS41-207ENST00000439468 CCDC74AQ96AQ1 378 aa6.11□□□□□ -1.43
VPS41-207ENST00000439468 TCF12Q99081 682 aa6.11□□□□□ -1.43
VPS41-207ENST00000439468 KRTAP4-8Q9BYQ9 185 aa6.11□□□□□ -1.43
VPS41-207ENST00000439468 DNAJC25Q9H1X3 360 aa6.11□□□□□ -1.43
VPS41-207ENST00000439468 CLEC4MQ9H2X3 399 aaPredicted RBP6.11□□□□□ -1.43
VPS41-207ENST00000439468 KIAA0319Q5VV43 1072 aa6.1□□□□□ -1.43
VPS41-207ENST00000439468 NUTM2GQ5VZR2 741 aa6.1□□□□□ -1.43
VPS41-207ENST00000439468 ANKRD34AQ69YU3 496 aa6.1□□□□□ -1.43
VPS41-207ENST00000439468 KCNF1Q9H3M0 494 aa6.1□□□□□ -1.43
VPS41-207ENST00000439468 STOML1Q9UBI4 398 aa6.1□□□□□ -1.43
VPS41-207ENST00000439468 RAXQ9Y2V3 346 aa6.1□□□□□ -1.43
VPS41-207ENST00000439468 FSTP19883 344 aa6.09□□□□□ -1.43
VPS41-207ENST00000439468 UVSSAQ2YD98 709 aa6.09□□□□□ -1.43
VPS41-207ENST00000439468 Q8N3U1 123 aa6.09□□□□□ -1.43
VPS41-207ENST00000439468 DDX54Q8TDD1 881 aaKnown RBP6.09□□□□□ -1.43
VPS41-207ENST00000439468 SOX17Q9H6I2 414 aaPredicted RBP6.09□□□□□ -1.43
VPS41-207ENST00000439468 NLRP2Q9NX02 1062 aa6.09□□□□□ -1.43
VPS41-207ENST00000439468 PNMA6FA0A0J9YX94 578 aa6.08□□□□□ -1.44
VPS41-207ENST00000439468 LOC100289279A0A1B0GTE1 492 aa6.08□□□□□ -1.44
VPS41-207ENST00000439468 PREPP48147 710 aa6.08□□□□□ -1.44
VPS41-207ENST00000439468 ARMC10Q8N2F6 343 aa6.08□□□□□ -1.44
VPS41-207ENST00000439468 C12orf50Q8NA57 414 aaPredicted RBP6.08□□□□□ -1.44
VPS41-207ENST00000439468 EPS8L3Q8TE67 593 aaKnown RBP6.08□□□□□ -1.44
VPS41-207ENST00000439468 ALKBH8Q96BT7 664 aaKnown RBP6.08□□□□□ -1.44
VPS41-207ENST00000439468 MYRFLQ96LU7 910 aa6.08□□□□□ -1.44
VPS41-207ENST00000439468 CYP4F12Q9HCS2 524 aa6.08□□□□□ -1.44
VPS41-207ENST00000439468 TRAK1Q9UPV9 953 aa6.08□□□□□ -1.44
VPS41-207ENST00000439468 ANKRD33BA6NCL7 494 aa6.07□□□□□ -1.44
VPS41-207ENST00000439468 EIF4EBP3O60516 100 aaPredicted RBP6.07□□□□□ -1.44
VPS41-207ENST00000439468 IGHA2P01877 340 aa6.07□□□□□ -1.44
VPS41-207ENST00000439468 BMP3P12645 472 aa6.07□□□□□ -1.44
VPS41-207ENST00000439468 RXRBP28702 533 aa6.07□□□□□ -1.44
VPS41-207ENST00000439468 MAPK8P45983 427 aa6.07□□□□□ -1.44
VPS41-207ENST00000439468 PLCB3Q01970 1234 aa6.07□□□□□ -1.44
VPS41-207ENST00000439468 ZNF423Q2M1K9 1284 aa6.07□□□□□ -1.44
VPS41-207ENST00000439468 DTHD1Q6ZMT9 781 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms