RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 CCL5P13501 91 aa12.69□□□□□ -0.38
SMPD4-208ENST00000439029 LACTBP83111 547 aaPredicted RBP12.69□□□□□ -0.38
SMPD4-208ENST00000439029 TRIM28Q13263 835 aaKnown RBP12.69□□□□□ -0.38
SMPD4-208ENST00000439029 KIF22Q14807 665 aa12.69□□□□□ -0.38
SMPD4-208ENST00000439029 RIC3Q7Z5B4 369 aa12.69□□□□□ -0.38
SMPD4-208ENST00000439029 UBE2Q1Q7Z7E8 422 aa12.69□□□□□ -0.38
SMPD4-208ENST00000439029 CDAN1Q8IWY9 1227 aa12.69□□□□□ -0.38
SMPD4-208ENST00000439029 CERS5Q8N5B7 392 aa12.69□□□□□ -0.38
SMPD4-208ENST00000439029 PRMT6Q96LA8 375 aaPredicted RBP12.69□□□□□ -0.38
SMPD4-208ENST00000439029 JAG2Q9Y219 1238 aa12.69□□□□□ -0.38
SMPD4-208ENST00000439029 COL1A1P02452 1464 aaPredicted RBP12.69□□□□□ -0.38
SMPD4-208ENST00000439029 LAMB1P07942 1786 aa12.69□□□□□ -0.38
SMPD4-208ENST00000439029 SPEF2Q9C093 1822 aa12.68□□□□□ -0.38
SMPD4-208ENST00000439029 EVI5O60447 810 aa12.68□□□□□ -0.38
SMPD4-208ENST00000439029 FARP2O94887 1054 aaPredicted RBP12.68□□□□□ -0.38
SMPD4-208ENST00000439029 CTGFP29279 349 aa12.68□□□□□ -0.38
SMPD4-208ENST00000439029 RASA3Q14644 834 aa12.68□□□□□ -0.38
SMPD4-208ENST00000439029 CFAP100Q494V2 611 aa12.68□□□□□ -0.38
SMPD4-208ENST00000439029 RNF208Q9H0X6 261 aa12.68□□□□□ -0.38
SMPD4-208ENST00000439029 BIN2Q9UBW5 565 aaPredicted RBP12.68□□□□□ -0.38
SMPD4-208ENST00000439029 PPP2R3BQ9Y5P8 575 aa12.68□□□□□ -0.38
SMPD4-208ENST00000439029 ZNF804BA4D1E1 1349 aa12.67□□□□□ -0.38
SMPD4-208ENST00000439029 OTOFQ9HC10 1997 aa12.67□□□□□ -0.38
SMPD4-208ENST00000439029 GJA8P48165 433 aa12.67□□□□□ -0.38
SMPD4-208ENST00000439029 RBM5P52756 815 aaKnown RBP eCLIP12.67□□□□□ -0.38
SMPD4-208ENST00000439029 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.67□□□□□ -0.38
SMPD4-208ENST00000439029 NKX2-3Q8TAU0 364 aa12.67□□□□□ -0.38
SMPD4-208ENST00000439029 CDC5LQ99459 802 aaKnown RBP12.67□□□□□ -0.38
SMPD4-208ENST00000439029 CPA4Q9UI42 421 aa12.67□□□□□ -0.38
SMPD4-208ENST00000439029 LAMA3Q16787 3333 aa12.67□□□□□ -0.38
SMPD4-208ENST00000439029 A0A1W2PPC1 479 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 UNCXA6NJT0 531 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 MYO1BO43795 1136 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 TLR2O60603 784 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 PCCAP05165 728 aaPredicted RBP12.66□□□□□ -0.38
SMPD4-208ENST00000439029 GJB1P08034 283 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 GTF2A2P52657 109 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 VGLL4Q14135 290 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 RAET1EQ8TD07 263 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 GREM2Q9H772 168 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 PHAXQ9H814 394 aaKnown RBP12.66□□□□□ -0.38
SMPD4-208ENST00000439029 DBF4Q9UBU7 674 aaPredicted RBP12.66□□□□□ -0.38
SMPD4-208ENST00000439029 STXBP5LQ9Y2K9 1186 aa12.66□□□□□ -0.38
SMPD4-208ENST00000439029 SPDYE2BA6NHP3 402 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 BTBD19C9JJ37 291 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 SNAP23O00161 211 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 SPDYE6P0CI01 402 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 HSP90B1P14625 803 aaKnown RBP12.65□□□□□ -0.38
SMPD4-208ENST00000439029 GRK4P32298 578 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 PSMC4P43686 418 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 CTSWP56202 376 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 GOLGA2Q08379 1002 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 NEUROD2Q15784 382 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 U2AF1L4Q8WU68 220 aaKnown RBP12.65□□□□□ -0.38
SMPD4-208ENST00000439029 TRIM47Q96LD4 638 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 UNC93B1Q9H1C4 597 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 BSDC1Q9NW68 430 aaPredicted RBP12.65□□□□□ -0.38
SMPD4-208ENST00000439029 BABAM1Q9NWV8 329 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 HYPKQ9NX55 129 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 CWC25Q9NXE8 425 aaPredicted RBP12.65□□□□□ -0.38
SMPD4-208ENST00000439029 SRRDQ9UH36 339 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 RIPOR2Q9Y4F9 1068 aa12.65□□□□□ -0.38
SMPD4-208ENST00000439029 FMNL1O95466 1100 aaPredicted RBP12.64□□□□□ -0.39
SMPD4-208ENST00000439029 OSBPP22059 807 aa12.64□□□□□ -0.39
SMPD4-208ENST00000439029 MMP14P50281 582 aa12.64□□□□□ -0.39
SMPD4-208ENST00000439029 MAP3K9P80192 1104 aa12.64□□□□□ -0.39
SMPD4-208ENST00000439029 MTMR14Q8NCE2 650 aa12.64□□□□□ -0.39
SMPD4-208ENST00000439029 CD209Q9NNX6 404 aa12.64□□□□□ -0.39
SMPD4-208ENST00000439029 MTMR10Q9NXD2 777 aa12.64□□□□□ -0.39
SMPD4-208ENST00000439029 ZMYND8Q9ULU4 1186 aaPredicted RBP12.64□□□□□ -0.39
SMPD4-208ENST00000439029 LEMD3Q9Y2U8 911 aa12.64□□□□□ -0.39
SMPD4-208ENST00000439029 CLSPNQ9HAW4 1339 aa12.63□□□□□ -0.39
SMPD4-208ENST00000439029 CHL1O00533 1208 aa12.63□□□□□ -0.39
SMPD4-208ENST00000439029 WDHD1O75717 1129 aaPredicted RBP12.63□□□□□ -0.39
SMPD4-208ENST00000439029 KCNJ4P48050 445 aa12.63□□□□□ -0.39
SMPD4-208ENST00000439029 PRMT2P55345 433 aa12.63□□□□□ -0.39
SMPD4-208ENST00000439029 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.63□□□□□ -0.39
SMPD4-208ENST00000439029 CCDC191Q8NCU4 936 aa12.63□□□□□ -0.39
SMPD4-208ENST00000439029 TTLL11Q8NHH1 800 aa12.63□□□□□ -0.39
SMPD4-208ENST00000439029 MYPNQ86TC9 1320 aa12.62□□□□□ -0.39
SMPD4-208ENST00000439029 TCP10L2B9ZVM9 353 aa12.62□□□□□ -0.39
SMPD4-208ENST00000439029 GNRH1P01148 92 aa12.62□□□□□ -0.39
SMPD4-208ENST00000439029 TMPOP42166 694 aaKnown RBP12.62□□□□□ -0.39
SMPD4-208ENST00000439029 DUSP27Q5VZP5 1158 aa12.62□□□□□ -0.39
SMPD4-208ENST00000439029 TMEM39BQ9GZU3 492 aa12.62□□□□□ -0.39
SMPD4-208ENST00000439029 TDRD3Q9H7E2 651 aaKnown RBP12.62□□□□□ -0.39
SMPD4-208ENST00000439029 ZNF70Q9UC06 446 aaPredicted RBP12.62□□□□□ -0.39
SMPD4-208ENST00000439029 CSADQ9Y600 493 aa12.62□□□□□ -0.39
SMPD4-208ENST00000439029 ECM29Q5VYK3 1845 aa12.61□□□□□ -0.39
SMPD4-208ENST00000439029 SGPL1O95470 568 aa12.61□□□□□ -0.39
SMPD4-208ENST00000439029 TFRCP02786 760 aaKnown RBP12.61□□□□□ -0.39
SMPD4-208ENST00000439029 CETPP11597 493 aa12.61□□□□□ -0.39
SMPD4-208ENST00000439029 SYN1P17600 705 aa12.61□□□□□ -0.39
SMPD4-208ENST00000439029 IGHMBP2P38935 993 aaKnown RBP12.61□□□□□ -0.39
SMPD4-208ENST00000439029 BCAMP50895 628 aa12.61□□□□□ -0.39
SMPD4-208ENST00000439029 UBXN2AP68543 259 aa12.61□□□□□ -0.39
SMPD4-208ENST00000439029 PRKCZQ05513 592 aa12.61□□□□□ -0.39
SMPD4-208ENST00000439029 TRIM26Q12899 539 aaPredicted RBP12.61□□□□□ -0.39
SMPD4-208ENST00000439029 C17orf99Q6UX52 265 aa12.61□□□□□ -0.39
SMPD4-208ENST00000439029 C7orf61Q8IZ16 206 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms