RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 XAGE2Q96GT9 111 aa15.34■□□□□ 0.05
USP40-205ENST00000430158 PHKA1P46020 1223 aa15.33■□□□□ 0.04
USP40-205ENST00000430158 OS9Q13438 667 aaPredicted RBP15.33■□□□□ 0.04
USP40-205ENST00000430158 DACT2Q5SW24 774 aa15.33■□□□□ 0.04
USP40-205ENST00000430158 CIAPIN1Q6FI81 312 aa15.33■□□□□ 0.04
USP40-205ENST00000430158 ZNF804AQ7Z570 1209 aa15.33■□□□□ 0.04
USP40-205ENST00000430158 ZNF784Q8NCA9 323 aaPredicted RBP15.33■□□□□ 0.04
USP40-205ENST00000430158 KIF1BPQ96EK5 621 aa15.33■□□□□ 0.04
USP40-205ENST00000430158 FAM205AQ6ZU69 1335 aa15.33■□□□□ 0.04
USP40-205ENST00000430158 COL1A1P02452 1464 aaPredicted RBP15.33■□□□□ 0.04
USP40-205ENST00000430158 SCN4AP35499 1836 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 USP17L3A6NCW0 530 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 USP17L4A6NCW7 530 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 TNIP1Q15025 636 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 STRIP1Q5VSL9 837 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 CCDC102BQ68D86 513 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 USP17L1Q7RTZ2 530 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 DBNDD2Q9BQY9 259 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 IL1RAPL2Q9NP60 686 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 TLR7Q9NYK1 1049 aaKnown RBP15.32■□□□□ 0.04
USP40-205ENST00000430158 DBNLQ9UJU6 430 aaKnown RBP15.32■□□□□ 0.04
USP40-205ENST00000430158 MYH13Q9UKX3 1938 aa15.32■□□□□ 0.04
USP40-205ENST00000430158 SCNN1DP51172 638 aa15.31■□□□□ 0.04
USP40-205ENST00000430158 CAVIN4Q5BKX8 364 aa15.31■□□□□ 0.04
USP40-205ENST00000430158 DPY19L2Q6NUT2 758 aa15.31■□□□□ 0.04
USP40-205ENST00000430158 SMC5Q8IY18 1101 aa15.31■□□□□ 0.04
USP40-205ENST00000430158 CERS5Q8N5B7 392 aa15.31■□□□□ 0.04
USP40-205ENST00000430158 MXD3Q9BW11 206 aa15.31■□□□□ 0.04
USP40-205ENST00000430158 GMPSP49915 693 aaPredicted RBP15.3■□□□□ 0.04
USP40-205ENST00000430158 GTF2IP78347 998 aa15.3■□□□□ 0.04
USP40-205ENST00000430158 TTLL5Q6EMB2 1281 aa15.3■□□□□ 0.04
USP40-205ENST00000430158 RSBN1LQ6PCB5 846 aaPredicted RBP15.3■□□□□ 0.04
USP40-205ENST00000430158 DPF2Q92785 391 aa15.3■□□□□ 0.04
USP40-205ENST00000430158 NEUROD6Q96NK8 337 aa15.3■□□□□ 0.04
USP40-205ENST00000430158 CCDC8Q9H0W5 538 aaPredicted RBP15.3■□□□□ 0.04
USP40-205ENST00000430158 NMRK2Q9NPI5 230 aa15.3■□□□□ 0.04
USP40-205ENST00000430158 IQSEC3Q9UPP2 1182 aaPredicted RBP15.3■□□□□ 0.04
USP40-205ENST00000430158 KDM2BQ8NHM5 1336 aa15.29■□□□□ 0.04
USP40-205ENST00000430158 SHTN1A0MZ66 631 aa15.29■□□□□ 0.04
USP40-205ENST00000430158 G3V3G9 751 aa15.29■□□□□ 0.04
USP40-205ENST00000430158 APBB1O00213 710 aa15.29■□□□□ 0.04
USP40-205ENST00000430158 SMARCA5O60264 1052 aaPredicted RBP15.29■□□□□ 0.04
USP40-205ENST00000430158 ARID4AP29374 1257 aaPredicted RBP15.29■□□□□ 0.04
USP40-205ENST00000430158 FKBP1AP62942 108 aaKnown RBP15.29■□□□□ 0.04
USP40-205ENST00000430158 DCAF8Q5TAQ9 597 aa15.29■□□□□ 0.04
USP40-205ENST00000430158 ZNF512BQ96KM6 892 aaPredicted RBP15.29■□□□□ 0.04
USP40-205ENST00000430158 LRRCC1Q9C099 1032 aa15.29■□□□□ 0.04
USP40-205ENST00000430158 RWDD1Q9H446 243 aaPredicted RBP15.29■□□□□ 0.04
USP40-205ENST00000430158 GPRC5DQ9NZD1 345 aa15.29■□□□□ 0.04
USP40-205ENST00000430158 GJA3Q9Y6H8 435 aa15.29■□□□□ 0.04
USP40-205ENST00000430158 PDS5AQ29RF7 1337 aaKnown RBP15.28■□□□□ 0.04
USP40-205ENST00000430158 KIF3CO14782 793 aa15.28■□□□□ 0.04
USP40-205ENST00000430158 SEMA3EO15041 775 aa15.28■□□□□ 0.04
USP40-205ENST00000430158 RPS12P25398 132 aaKnown RBP15.28■□□□□ 0.04
USP40-205ENST00000430158 EPS15P42566 896 aa15.28■□□□□ 0.04
USP40-205ENST00000430158 RASGRF1Q13972 1273 aa15.28■□□□□ 0.04
USP40-205ENST00000430158 SCARF1Q14162 830 aa15.28■□□□□ 0.04
USP40-205ENST00000430158 AACSQ86V21 672 aa15.28■□□□□ 0.04
USP40-205ENST00000430158 AGBL3Q8NEM8 1001 aa15.28■□□□□ 0.04
USP40-205ENST00000430158 GCC1Q96CN9 775 aa15.28■□□□□ 0.04
USP40-205ENST00000430158 ZNF280AP59817 542 aaPredicted RBP15.27■□□□□ 0.04
USP40-205ENST00000430158 GRIK5Q16478 980 aa15.27■□□□□ 0.04
USP40-205ENST00000430158 VPS37DQ86XT2 251 aa15.27■□□□□ 0.04
USP40-205ENST00000430158 CLASRPQ8N2M8 674 aaKnown RBP15.27■□□□□ 0.04
USP40-205ENST00000430158 ZNF526Q8TF50 670 aaPredicted RBP15.27■□□□□ 0.04
USP40-205ENST00000430158 RRAGCQ9HB90 399 aa15.27■□□□□ 0.04
USP40-205ENST00000430158 JAG2Q9Y219 1238 aa15.27■□□□□ 0.04
USP40-205ENST00000430158 MYO5AQ9Y4I1 1855 aaKnown RBP15.27■□□□□ 0.03
USP40-205ENST00000430158 ADAMTSL1Q8N6G6 1762 aa15.26■□□□□ 0.03
USP40-205ENST00000430158 SALL3Q9BXA9 1300 aa15.26■□□□□ 0.03
USP40-205ENST00000430158 POLR2AP24928 1970 aaKnown RBP15.26■□□□□ 0.03
USP40-205ENST00000430158 MCAMP43121 646 aa15.26■□□□□ 0.03
USP40-205ENST00000430158 TAF1DQ9H5J8 278 aaPredicted RBP15.26■□□□□ 0.03
USP40-205ENST00000430158 HMG20BQ9P0W2 317 aa15.26■□□□□ 0.03
USP40-205ENST00000430158 SALL1Q9NSC2 1324 aa15.25■□□□□ 0.03
USP40-205ENST00000430158 VEGFAP15692 232 aaPredicted RBP15.25■□□□□ 0.03
USP40-205ENST00000430158 CLCN6P51797 869 aa15.25■□□□□ 0.03
USP40-205ENST00000430158 PI16Q6UXB8 463 aa15.25■□□□□ 0.03
USP40-205ENST00000430158 C16orf71Q8IYS4 520 aaPredicted RBP15.25■□□□□ 0.03
USP40-205ENST00000430158 GPBP1L1Q9HC44 474 aaPredicted RBP15.25■□□□□ 0.03
USP40-205ENST00000430158 GNL3LQ9NVN8 582 aaKnown RBP15.25■□□□□ 0.03
USP40-205ENST00000430158 CNOT7Q9UIV1 285 aaKnown RBP15.25■□□□□ 0.03
USP40-205ENST00000430158 DENND2AQ9ULE3 1009 aa15.25■□□□□ 0.03
USP40-205ENST00000430158 MYO3BQ8WXR4 1341 aa15.24■□□□□ 0.03
USP40-205ENST00000430158 EGFRP00533 1210 aa15.24■□□□□ 0.03
USP40-205ENST00000430158 UQCRFS1P1P0C7P4 283 aa15.24■□□□□ 0.03
USP40-205ENST00000430158 HIRAP54198 1017 aaPredicted RBP15.24■□□□□ 0.03
USP40-205ENST00000430158 MFSD14BQ5SR56 506 aa15.24■□□□□ 0.03
USP40-205ENST00000430158 MICALL2Q8IY33 904 aa15.24■□□□□ 0.03
USP40-205ENST00000430158 OTUD7AQ8TE49 926 aaPredicted RBP15.24■□□□□ 0.03
USP40-205ENST00000430158 ZBED3Q96IU2 234 aaPredicted RBP15.24■□□□□ 0.03
USP40-205ENST00000430158 HACL1Q9UJ83 578 aa15.24■□□□□ 0.03
USP40-205ENST00000430158 USP17L8P0C7I0 530 aa15.23■□□□□ 0.03
USP40-205ENST00000430158 EPHX2P34913 555 aa15.23■□□□□ 0.03
USP40-205ENST00000430158 NUCB1Q02818 461 aa15.23■□□□□ 0.03
USP40-205ENST00000430158 CHAF1AQ13111 956 aaPredicted RBP15.23■□□□□ 0.03
USP40-205ENST00000430158 GORABQ5T7V8 394 aa15.23■□□□□ 0.03
USP40-205ENST00000430158 SPATA5Q8NB90 893 aa15.23■□□□□ 0.03
USP40-205ENST00000430158 WDR66Q8TBY9 1149 aa15.23■□□□□ 0.03
USP40-205ENST00000430158 TRPM4Q8TD43 1214 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms