RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 NUP133Q8WUM0 1156 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 ISCA1Q9BUE6 129 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 AFDNP55196 1824 aaKnown RBP9.86□□□□□ -0.83
CD44-208ENST00000428726 MAP3K15Q6ZN16 1313 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 XIRP1Q702N8 1843 aaKnown RBP9.86□□□□□ -0.83
CD44-208ENST00000428726 LOC102724428A0A0B4J2F2 783 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 CTSWP56202 376 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 SIK1P57059 783 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 ZBTB38Q8NAP3 1195 aaPredicted RBP9.86□□□□□ -0.83
CD44-208ENST00000428726 ZBTB9Q96C00 473 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 ARFGEF2Q9Y6D5 1785 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 FOXP2O15409 715 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 PRC1O43663 620 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 ME1P48163 572 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 DRC7Q8IY82 874 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 A0A1B0GVL5 298 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 CPLX1O14810 134 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 ADCY5O95622 1261 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 PGBD1Q96JS3 809 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 ZSCAN31Q96LW9 406 aaPredicted RBP9.85□□□□□ -0.83
CD44-208ENST00000428726 DNAJC25Q9H1X3 360 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 LRP2BPQ9P2M1 347 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 UBAP1LF5GYI3 381 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 ZNF213O14771 459 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 MBD4O95243 580 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 RALYLQ86SE5 291 aaKnown RBP9.85□□□□□ -0.83
CD44-208ENST00000428726 TBC1D10CQ8IV04 446 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 USP28Q96RU2 1077 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 MED23Q9ULK4 1368 aa9.85□□□□□ -0.83
CD44-208ENST00000428726 GLI3P10071 1580 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 UQCRHLA0A096LP55 91 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 UQCRHP07919 91 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 KRT85P78386 507 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 RASGRF1Q13972 1273 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 NKX1-1Q15270 411 aaPredicted RBP9.84□□□□□ -0.83
CD44-208ENST00000428726 ERFEQ4G0M1 354 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 ZMYM1Q5SVZ6 1142 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 DHX32Q7L7V1 743 aaKnown RBP9.84□□□□□ -0.83
CD44-208ENST00000428726 AIDAQ96BJ3 306 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 RAI14Q9P0K7 980 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 NRBP1Q9UHY1 535 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 GLIPR1L2Q4G1C9 344 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 CYB5R4Q7L1T6 521 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 GTF3C6Q969F1 213 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 PKNOX2Q96KN3 472 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 SH2B1Q9NRF2 756 aaPredicted RBP9.84□□□□□ -0.83
CD44-208ENST00000428726 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.84□□□□□ -0.83
CD44-208ENST00000428726 RIPOR2Q9Y4F9 1068 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 MRVI1Q9Y6F6 885 aa9.84□□□□□ -0.83
CD44-208ENST00000428726 U3KPZ7 1027 aaPredicted RBP9.84□□□□□ -0.83
CD44-208ENST00000428726 PDIA3P30101 505 aaKnown RBP9.83□□□□□ -0.84
CD44-208ENST00000428726 DYNLL1P63167 89 aaKnown RBP9.83□□□□□ -0.84
CD44-208ENST00000428726 VPS37DQ86XT2 251 aa9.83□□□□□ -0.84
CD44-208ENST00000428726 LEO1Q8WVC0 666 aaPredicted RBP9.83□□□□□ -0.84
CD44-208ENST00000428726 HMG20BQ9P0W2 317 aa9.83□□□□□ -0.84
CD44-208ENST00000428726 PCCAP05165 728 aaPredicted RBP9.83□□□□□ -0.84
CD44-208ENST00000428726 UBE2HP62256 183 aa9.83□□□□□ -0.84
CD44-208ENST00000428726 ANO6Q4KMQ2 910 aa9.83□□□□□ -0.84
CD44-208ENST00000428726 INTS5Q6P9B9 1019 aaKnown RBP9.83□□□□□ -0.84
CD44-208ENST00000428726 NSUN7Q8NE18 718 aaKnown RBP9.83□□□□□ -0.84
CD44-208ENST00000428726 TNMDQ9H2S6 317 aa9.83□□□□□ -0.84
CD44-208ENST00000428726 ZNF219Q9P2Y4 722 aaPredicted RBP9.83□□□□□ -0.84
CD44-208ENST00000428726 CENPFP49454 3210 aa9.83□□□□□ -0.84
CD44-208ENST00000428726 PALLDQ8WX93 1383 aa9.83□□□□□ -0.84
CD44-208ENST00000428726 PDE8BO95263 885 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 ARID5BQ14865 1188 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 SF3A1Q15459 793 aaKnown RBP9.82□□□□□ -0.84
CD44-208ENST00000428726 USPL1Q5W0Q7 1092 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 ADGRA1Q86SQ6 560 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 CELF1Q92879 486 aaKnown RBP9.82□□□□□ -0.84
CD44-208ENST00000428726 TACC3Q9Y6A5 838 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 UBR2Q8IWV8 1755 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 RFX7Q2KHR2 1363 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 TDO2P48775 406 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 GNL2Q13823 731 aaKnown RBP9.82□□□□□ -0.84
CD44-208ENST00000428726 IMMTQ16891 758 aaKnown RBP9.82□□□□□ -0.84
CD44-208ENST00000428726 LCORLQ8N3X6 602 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 SYAP1Q96A49 352 aaPredicted RBP9.82□□□□□ -0.84
CD44-208ENST00000428726 UIMC1Q96RL1 719 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 ORC3Q9UBD5 711 aaPredicted RBP9.82□□□□□ -0.84
CD44-208ENST00000428726 KCNJ14Q9UNX9 436 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 CLIC4Q9Y696 253 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 GNPATO15228 680 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 COBLO75128 1261 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 ANTXR2P58335 489 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 LRMPQ12912 555 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 CCDC183Q5T5S1 534 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 ATP6V1DQ9Y5K8 247 aa9.82□□□□□ -0.84
CD44-208ENST00000428726 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.82□□□□□ -0.84
CD44-208ENST00000428726 NMT2O60551 498 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 FDPSP14324 419 aaKnown RBP9.81□□□□□ -0.84
CD44-208ENST00000428726 PDE6AP16499 860 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 TXNRD3Q86VQ6 643 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 PPP1R9BQ96SB3 815 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 NUP62CLQ9H1M0 184 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 GOLPH3LQ9H4A5 285 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 CCDC87Q9NVE4 849 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 RRP9O43818 475 aaKnown RBP9.81□□□□□ -0.84
CD44-208ENST00000428726 SLURP2P0DP57 97 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 PDIA4P13667 645 aaKnown RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms