RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TRIM11Q96F44 468 aa7□□□□□ -1.29
USP40-204ENST00000427947 AKAP2Q9Y2D5 859 aa7□□□□□ -1.29
USP40-204ENST00000427947 PPME1Q9Y570 386 aa7□□□□□ -1.29
USP40-204ENST00000427947 LINC01387J3KSC0 135 aa6.99□□□□□ -1.29
USP40-204ENST00000427947 XRCC5P13010 732 aaKnown RBP6.99□□□□□ -1.29
USP40-204ENST00000427947 PTPN12Q05209 780 aaKnown RBP6.99□□□□□ -1.29
USP40-204ENST00000427947 TRAPPC3LQ5T215 181 aa6.99□□□□□ -1.29
USP40-204ENST00000427947 LINC00114Q6XXX2 140 aa6.99□□□□□ -1.29
USP40-204ENST00000427947 VN1R5Q7Z5H4 357 aa6.99□□□□□ -1.29
USP40-204ENST00000427947 C3orf58Q8NDZ4 430 aa6.99□□□□□ -1.29
USP40-204ENST00000427947 CRELD1Q96HD1 420 aa6.99□□□□□ -1.29
USP40-204ENST00000427947 CLEC4MQ9H2X3 399 aaPredicted RBP6.99□□□□□ -1.29
USP40-204ENST00000427947 ZNF576Q9H609 170 aa6.99□□□□□ -1.29
USP40-204ENST00000427947 KIAA1522Q9P206 1035 aaPredicted RBP6.99□□□□□ -1.29
USP40-204ENST00000427947 CNTNAP5Q8WYK1 1306 aa6.99□□□□□ -1.29
USP40-204ENST00000427947 H3BRJ5 948 aa6.98□□□□□ -1.29
USP40-204ENST00000427947 PIK3R2O00459 728 aa6.98□□□□□ -1.29
USP40-204ENST00000427947 CTSHP09668 335 aa6.98□□□□□ -1.29
USP40-204ENST00000427947 IKBKEQ14164 716 aa6.98□□□□□ -1.29
USP40-204ENST00000427947 SLC7A3Q8WY07 619 aa6.98□□□□□ -1.29
USP40-204ENST00000427947 PLVAPQ9BX97 442 aa6.98□□□□□ -1.29
USP40-204ENST00000427947 TTF2Q9UNY4 1162 aaKnown RBP6.98□□□□□ -1.29
USP40-204ENST00000427947 FAM181BA6NEQ2 426 aa6.97□□□□□ -1.29
USP40-204ENST00000427947 FBXO24O75426 580 aa6.97□□□□□ -1.29
USP40-204ENST00000427947 PCDH1Q08174 1060 aa6.97□□□□□ -1.29
USP40-204ENST00000427947 TSNAXIP1Q2TAA8 658 aa6.97□□□□□ -1.29
USP40-204ENST00000427947 MEI1Q5TIA1 1274 aa6.97□□□□□ -1.29
USP40-204ENST00000427947 FAM117BQ6P1L5 589 aa6.97□□□□□ -1.29
USP40-204ENST00000427947 BEND7Q8N7W2 519 aaPredicted RBP6.97□□□□□ -1.29
USP40-204ENST00000427947 CARD10Q9BWT7 1032 aa6.97□□□□□ -1.29
USP40-204ENST00000427947 SPDYE3A6NKU9 549 aa6.96□□□□□ -1.3
USP40-204ENST00000427947 ESRRAP11474 423 aaPredicted RBP6.96□□□□□ -1.3
USP40-204ENST00000427947 ZNF157P51786 506 aaPredicted RBP6.96□□□□□ -1.3
USP40-204ENST00000427947 TPTE2Q6XPS3 522 aa6.96□□□□□ -1.3
USP40-204ENST00000427947 SCARF2Q96GP6 870 aaPredicted RBP6.96□□□□□ -1.3
USP40-204ENST00000427947 ZFYVE1Q9HBF4 777 aa6.96□□□□□ -1.3
USP40-204ENST00000427947 GPN3Q9UHW5 284 aaPredicted RBP6.96□□□□□ -1.3
USP40-204ENST00000427947 PPM1HQ9ULR3 514 aa6.96□□□□□ -1.3
USP40-204ENST00000427947 A0A0A0MRY4 1105 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 FAM229AH3BQW9 127 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 SOX1O00570 391 aaPredicted RBP6.95□□□□□ -1.3
USP40-204ENST00000427947 FSCN2O14926 492 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 RECKO95980 971 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 VAMP1P23763 118 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 RAC1P63000 192 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 PIP4K2BP78356 416 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 FAAP100Q0VG06 881 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 SETDB1Q15047 1291 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 ZNF423Q2M1K9 1284 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 RPS26P11Q5JNZ5 115 aaPredicted RBP6.95□□□□□ -1.3
USP40-204ENST00000427947 TMEM87AQ8NBN3 555 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 BACH2Q9BYV9 841 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 SEC31BQ9NQW1 1179 aa6.95□□□□□ -1.3
USP40-204ENST00000427947 NOP53Q9NZM5 478 aaKnown RBP6.95□□□□□ -1.3
USP40-204ENST00000427947 DEAF1O75398 565 aaPredicted RBP6.94□□□□□ -1.3
USP40-204ENST00000427947 B3GALT4O96024 378 aa6.94□□□□□ -1.3
USP40-204ENST00000427947 ARL4DP49703 201 aa6.94□□□□□ -1.3
USP40-204ENST00000427947 TAF1CQ15572 869 aaPredicted RBP6.94□□□□□ -1.3
USP40-204ENST00000427947 HGSNATQ68CP4 663 aa6.94□□□□□ -1.3
USP40-204ENST00000427947 ILDR2Q71H61 639 aa6.94□□□□□ -1.3
USP40-204ENST00000427947 DTWD1Q8N5C7 304 aa6.94□□□□□ -1.3
USP40-204ENST00000427947 WNT8BQ93098 351 aa6.94□□□□□ -1.3
USP40-204ENST00000427947 SRA1Q9HD15 236 aaKnown RBP6.94□□□□□ -1.3
USP40-204ENST00000427947 E9PSI1 815 aa6.93□□□□□ -1.3
USP40-204ENST00000427947 C19orf57Q0VDD7 668 aa6.93□□□□□ -1.3
USP40-204ENST00000427947 TRIM28Q13263 835 aaKnown RBP6.93□□□□□ -1.3
USP40-204ENST00000427947 PRRT3Q5FWE3 981 aa6.93□□□□□ -1.3
USP40-204ENST00000427947 NPM2Q86SE8 214 aaKnown RBP6.93□□□□□ -1.3
USP40-204ENST00000427947 MAP4K3Q8IVH8 894 aa6.93□□□□□ -1.3
USP40-204ENST00000427947 FMR1NBQ8N0W7 255 aaPredicted RBP6.93□□□□□ -1.3
USP40-204ENST00000427947 GALNT11Q8NCW6 608 aa6.93□□□□□ -1.3
USP40-204ENST00000427947 CEP44Q9C0F1 390 aa6.93□□□□□ -1.3
USP40-204ENST00000427947 GSTM4Q03013 218 aa6.92□□□□□ -1.3
USP40-204ENST00000427947 PPP2R3AQ06190 1150 aa6.92□□□□□ -1.3
USP40-204ENST00000427947 CCDC85BQ15834 202 aaPredicted RBP6.92□□□□□ -1.3
USP40-204ENST00000427947 KLHL23Q8NBE8 558 aa6.92□□□□□ -1.3
USP40-204ENST00000427947 KLHDC7BQ96G42 594 aa6.92□□□□□ -1.3
USP40-204ENST00000427947 SOX17Q9H6I2 414 aaPredicted RBP6.92□□□□□ -1.3
USP40-204ENST00000427947 OSGEPQ9NPF4 335 aa6.92□□□□□ -1.3
USP40-204ENST00000427947 TMEM39AQ9NV64 488 aa6.92□□□□□ -1.3
USP40-204ENST00000427947 ENC1O14682 589 aa6.91□□□□□ -1.3
USP40-204ENST00000427947 CELA3AP09093 270 aa6.91□□□□□ -1.3
USP40-204ENST00000427947 ST13P50502 369 aaKnown RBP6.91□□□□□ -1.3
USP40-204ENST00000427947 LDLRAD1Q5T700 205 aa6.91□□□□□ -1.3
USP40-204ENST00000427947 FBXO11Q86XK2 927 aa6.91□□□□□ -1.3
USP40-204ENST00000427947 DDX54Q8TDD1 881 aaKnown RBP6.91□□□□□ -1.3
USP40-204ENST00000427947 ANKRD24Q8TF21 1146 aa6.91□□□□□ -1.3
USP40-204ENST00000427947 NECAB3Q96P71 396 aaPredicted RBP6.91□□□□□ -1.3
USP40-204ENST00000427947 STK17AQ9UEE5 414 aa6.91□□□□□ -1.3
USP40-204ENST00000427947 USP31Q70CQ4 1352 aa6.91□□□□□ -1.3
USP40-204ENST00000427947 DDX3YO15523 660 aaKnown RBP6.9□□□□□ -1.3
USP40-204ENST00000427947 ELNP15502 786 aa6.9□□□□□ -1.3
USP40-204ENST00000427947 COL8A1P27658 744 aa6.9□□□□□ -1.3
USP40-204ENST00000427947 CD68P34810 354 aaPredicted RBP6.9□□□□□ -1.3
USP40-204ENST00000427947 NLRP12P59046 1061 aa6.9□□□□□ -1.3
USP40-204ENST00000427947 SUZ12Q15022 739 aaKnown RBP6.9□□□□□ -1.3
USP40-204ENST00000427947 FOXD4L6Q3SYB3 417 aaPredicted RBP6.9□□□□□ -1.3
USP40-204ENST00000427947 FOXD4L3Q6VB84 417 aaPredicted RBP6.9□□□□□ -1.3
USP40-204ENST00000427947 SV2BQ7L1I2 683 aa6.9□□□□□ -1.3
USP40-204ENST00000427947 RNF225M0QZC1 329 aaPredicted RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms