RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 SSFA2P28290 1259 aa10.12□□□□□ -0.79
LINC01040-201ENST00000425048 GP2P55259 537 aaKnown RBP10.12□□□□□ -0.79
LINC01040-201ENST00000425048 SOX1O00570 391 aaPredicted RBP10.11□□□□□ -0.79
LINC01040-201ENST00000425048 PAX4O43316 350 aa10.11□□□□□ -0.79
LINC01040-201ENST00000425048 PHACTR2O75167 634 aa10.11□□□□□ -0.79
LINC01040-201ENST00000425048 EDN3P14138 238 aa10.11□□□□□ -0.79
LINC01040-201ENST00000425048 EHHADHQ08426 723 aa10.11□□□□□ -0.79
LINC01040-201ENST00000425048 IKBKEQ14164 716 aa10.11□□□□□ -0.79
LINC01040-201ENST00000425048 SHKBP1Q8TBC3 707 aa10.11□□□□□ -0.79
LINC01040-201ENST00000425048 ARID3CA6NKF2 412 aa10.1□□□□□ -0.79
LINC01040-201ENST00000425048 EREGO14944 169 aa10.1□□□□□ -0.79
LINC01040-201ENST00000425048 GAS2O43903 313 aaKnown RBP10.1□□□□□ -0.79
LINC01040-201ENST00000425048 TNFRSF21O75509 655 aa10.1□□□□□ -0.79
LINC01040-201ENST00000425048 NPR3P17342 541 aa10.1□□□□□ -0.79
LINC01040-201ENST00000425048 USP5P45974 858 aa10.1□□□□□ -0.79
LINC01040-201ENST00000425048 NUTM2GQ5VZR2 741 aa10.1□□□□□ -0.79
LINC01040-201ENST00000425048 HGSNATQ68CP4 663 aa10.1□□□□□ -0.79
LINC01040-201ENST00000425048 ZKSCAN3Q9BRR0 538 aa10.1□□□□□ -0.79
LINC01040-201ENST00000425048 OAS3Q9Y6K5 1087 aaKnown RBP10.1□□□□□ -0.79
LINC01040-201ENST00000425048 FAM13AO94988 1023 aa10.09□□□□□ -0.79
LINC01040-201ENST00000425048 SPINK2P20155 84 aa10.09□□□□□ -0.79
LINC01040-201ENST00000425048 MTMR3Q13615 1198 aa10.09□□□□□ -0.79
LINC01040-201ENST00000425048 VN1R5Q7Z5H4 357 aa10.09□□□□□ -0.79
LINC01040-201ENST00000425048 DTX1Q86Y01 620 aa10.09□□□□□ -0.79
LINC01040-201ENST00000425048 C12orf50Q8NA57 414 aaPredicted RBP10.09□□□□□ -0.79
LINC01040-201ENST00000425048 MTMR7Q9Y216 660 aa10.09□□□□□ -0.79
LINC01040-201ENST00000425048 MAP4P27816 1152 aaKnown RBP10.08□□□□□ -0.8
LINC01040-201ENST00000425048 LCE3BQ5TA77 95 aa10.08□□□□□ -0.8
LINC01040-201ENST00000425048 GIMAP7Q8NHV1 300 aa10.08□□□□□ -0.8
LINC01040-201ENST00000425048 SNX29Q8TEQ0 813 aa10.08□□□□□ -0.8
LINC01040-201ENST00000425048 GOLGA2P5Q9HBQ8 144 aa10.08□□□□□ -0.8
LINC01040-201ENST00000425048 TMEM88BA6NKF7 163 aa10.07□□□□□ -0.8
LINC01040-201ENST00000425048 WDR64B1ANS9 1081 aa10.07□□□□□ -0.8
LINC01040-201ENST00000425048 PPP1R15AO75807 674 aaPredicted RBP10.07□□□□□ -0.8
LINC01040-201ENST00000425048 WNT11O96014 354 aa10.07□□□□□ -0.8
LINC01040-201ENST00000425048 SMG8Q8ND04 991 aaKnown RBP10.07□□□□□ -0.8
LINC01040-201ENST00000425048 ASAP3Q8TDY4 903 aa10.07□□□□□ -0.8
LINC01040-201ENST00000425048 TMPRSS13Q9BYE2 586 aa10.07□□□□□ -0.8
LINC01040-201ENST00000425048 SOX17Q9H6I2 414 aaPredicted RBP10.07□□□□□ -0.8
LINC01040-201ENST00000425048 CYP4F12Q9HCS2 524 aa10.07□□□□□ -0.8
LINC01040-201ENST00000425048 TXKP42681 527 aa10.06□□□□□ -0.8
LINC01040-201ENST00000425048 SUGCTQ9HAC7 445 aa10.06□□□□□ -0.8
LINC01040-201ENST00000425048 EIF4EBP3O60516 100 aaPredicted RBP10.05□□□□□ -0.8
LINC01040-201ENST00000425048 ADAMTS4O75173 837 aa10.05□□□□□ -0.8
LINC01040-201ENST00000425048 TAL1P17542 331 aaPredicted RBP10.05□□□□□ -0.8
LINC01040-201ENST00000425048 RXRBP28702 533 aa10.05□□□□□ -0.8
LINC01040-201ENST00000425048 FKBP4Q02790 459 aaKnown RBP eCLIP10.05□□□□□ -0.8
LINC01040-201ENST00000425048 SF3B2Q13435 895 aaKnown RBP10.05□□□□□ -0.8
LINC01040-201ENST00000425048 EXOSC6Q5RKV6 272 aaKnown RBP10.05□□□□□ -0.8
LINC01040-201ENST00000425048 MFSD14AQ96MC6 490 aa10.05□□□□□ -0.8
LINC01040-201ENST00000425048 USP26Q9BXU7 913 aa10.05□□□□□ -0.8
LINC01040-201ENST00000425048 BHLHE41Q9C0J9 482 aaPredicted RBP10.05□□□□□ -0.8
LINC01040-201ENST00000425048 FOXD3Q9UJU5 478 aaPredicted RBP10.05□□□□□ -0.8
LINC01040-201ENST00000425048 AMOTL2Q9Y2J4 779 aa10.05□□□□□ -0.8
LINC01040-201ENST00000425048 LOC100289279A0A1B0GTE1 492 aa10.04□□□□□ -0.8
LINC01040-201ENST00000425048 SGO2Q562F6 1265 aa10.04□□□□□ -0.8
LINC01040-201ENST00000425048 ATG3Q9NT62 314 aa10.04□□□□□ -0.8
LINC01040-201ENST00000425048 ESRRAP11474 423 aaPredicted RBP10.03□□□□□ -0.8
LINC01040-201ENST00000425048 ZFYVE28Q9HCC9 887 aa10.03□□□□□ -0.8
LINC01040-201ENST00000425048 PIM2Q9P1W9 311 aa10.03□□□□□ -0.8
LINC01040-201ENST00000425048 FZD6O60353 706 aa10.02□□□□□ -0.81
LINC01040-201ENST00000425048 TIAF1O95411 115 aa10.02□□□□□ -0.81
LINC01040-201ENST00000425048 USP11P51784 963 aa10.02□□□□□ -0.81
LINC01040-201ENST00000425048 PEAR1Q5VY43 1037 aaPredicted RBP10.02□□□□□ -0.81
LINC01040-201ENST00000425048 GSTM4Q03013 218 aa10.01□□□□□ -0.81
LINC01040-201ENST00000425048 CCDC82Q8N4S0 544 aa10.01□□□□□ -0.81
LINC01040-201ENST00000425048 FBXL6Q8N531 539 aa10.01□□□□□ -0.81
LINC01040-201ENST00000425048 FMNL2Q96PY5 1086 aa10.01□□□□□ -0.81
LINC01040-201ENST00000425048 LEMD3Q9Y2U8 911 aa10.01□□□□□ -0.81
LINC01040-201ENST00000425048 FAM95CA0A1B0GW59 222 aa10□□□□□ -0.81
LINC01040-201ENST00000425048 DLGAP3O95886 979 aa10□□□□□ -0.81
LINC01040-201ENST00000425048 NFKBIBQ15653 356 aa10□□□□□ -0.81
LINC01040-201ENST00000425048 PAOXQ6QHF9 649 aa10□□□□□ -0.81
LINC01040-201ENST00000425048 LATS2Q9NRM7 1088 aa10□□□□□ -0.81
LINC01040-201ENST00000425048 CCDC87Q9NVE4 849 aa10□□□□□ -0.81
LINC01040-201ENST00000425048 ABL1P00519 1130 aa9.99□□□□□ -0.81
LINC01040-201ENST00000425048 F13BP05160 661 aa9.99□□□□□ -0.81
LINC01040-201ENST00000425048 DRD2P14416 443 aa9.99□□□□□ -0.81
LINC01040-201ENST00000425048 HOXA10P31260 410 aaPredicted RBP9.99□□□□□ -0.81
LINC01040-201ENST00000425048 KRTAP19-1Q8IUB9 90 aa9.99□□□□□ -0.81
LINC01040-201ENST00000425048 GJD3Q8N144 294 aa9.99□□□□□ -0.81
LINC01040-201ENST00000425048 OSBPL1AQ9BXW6 950 aa9.99□□□□□ -0.81
LINC01040-201ENST00000425048 SOX4Q06945 474 aaPredicted RBP9.98□□□□□ -0.81
LINC01040-201ENST00000425048 CPSF6Q16630 551 aaKnown RBP eCLIP9.98□□□□□ -0.81
LINC01040-201ENST00000425048 PHLDB3Q6NSJ2 640 aa9.98□□□□□ -0.81
LINC01040-201ENST00000425048 METTL12A8MUP2 240 aa9.97□□□□□ -0.81
LINC01040-201ENST00000425048 FBLIM1Q8WUP2 373 aa9.97□□□□□ -0.81
LINC01040-201ENST00000425048 A0A096LPE4 126 aa9.96□□□□□ -0.82
LINC01040-201ENST00000425048 A0A1W2PPZ6 126 aa9.96□□□□□ -0.82
LINC01040-201ENST00000425048 POLR3DP05423 398 aaPredicted RBP9.96□□□□□ -0.82
LINC01040-201ENST00000425048 FOSL1P15407 271 aa9.96□□□□□ -0.82
LINC01040-201ENST00000425048 CDPF1Q6NVV7 123 aa9.96□□□□□ -0.82
LINC01040-201ENST00000425048 METTL22Q9BUU2 404 aaPredicted RBP9.96□□□□□ -0.82
LINC01040-201ENST00000425048 YIPF2Q9BWQ6 316 aa9.96□□□□□ -0.82
LINC01040-201ENST00000425048 ANO2Q9NQ90 1003 aa9.96□□□□□ -0.82
LINC01040-201ENST00000425048 C2CD4AQ8NCU7 369 aaPredicted RBP9.95□□□□□ -0.82
LINC01040-201ENST00000425048 CLEC4MQ9H2X3 399 aaPredicted RBP9.95□□□□□ -0.82
LINC01040-201ENST00000425048 RNF114Q9Y508 228 aa9.95□□□□□ -0.82
LINC01040-201ENST00000425048 A0A1W2PP55 124 aa9.94□□□□□ -0.82
LINC01040-201ENST00000425048 CYP11A1P05108 521 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms