RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 BSNDQ8WZ55 320 aa6.41□□□□□ -1.38
HMGB3P20-201ENST00000417997 SOX13Q9UN79 622 aa6.41□□□□□ -1.38
HMGB3P20-201ENST00000417997 ADAM11O75078 769 aa6.4□□□□□ -1.38
HMGB3P20-201ENST00000417997 C19orf57Q0VDD7 668 aa6.4□□□□□ -1.38
HMGB3P20-201ENST00000417997 HGSNATQ68CP4 663 aa6.4□□□□□ -1.38
HMGB3P20-201ENST00000417997 PRR23CQ6ZRP0 262 aa6.4□□□□□ -1.38
HMGB3P20-201ENST00000417997 KIAA1211Q6ZU35 1233 aa6.4□□□□□ -1.38
HMGB3P20-201ENST00000417997 TXNDC2Q86VQ3 553 aa6.4□□□□□ -1.38
HMGB3P20-201ENST00000417997 DZIP1LQ8IYY4 767 aaKnown RBP6.4□□□□□ -1.38
HMGB3P20-201ENST00000417997 WNT8BQ93098 351 aa6.4□□□□□ -1.38
HMGB3P20-201ENST00000417997 CEP41Q9BYV8 373 aa6.4□□□□□ -1.38
HMGB3P20-201ENST00000417997 TOP2AP11388 1531 aaKnown RBP6.4□□□□□ -1.39
HMGB3P20-201ENST00000417997 METTL12A8MUP2 240 aa6.39□□□□□ -1.39
HMGB3P20-201ENST00000417997 NEFLP07196 543 aa6.39□□□□□ -1.39
HMGB3P20-201ENST00000417997 PDE3BQ13370 1112 aa6.39□□□□□ -1.39
HMGB3P20-201ENST00000417997 PEAR1Q5VY43 1037 aaPredicted RBP6.39□□□□□ -1.39
HMGB3P20-201ENST00000417997 UBL7Q96S82 380 aaPredicted RBP6.39□□□□□ -1.39
HMGB3P20-201ENST00000417997 USP26Q9BXU7 913 aa6.39□□□□□ -1.39
HMGB3P20-201ENST00000417997 OSGEPQ9NPF4 335 aa6.39□□□□□ -1.39
HMGB3P20-201ENST00000417997 BIN2Q9UBW5 565 aaPredicted RBP6.39□□□□□ -1.39
HMGB3P20-201ENST00000417997 SART1O43290 800 aaKnown RBP6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 ORC1Q13415 861 aa6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 ECM1Q16610 540 aa6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 XP32Q5T750 250 aa6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 USPL1Q5W0Q7 1092 aa6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 Q6ZS46 218 aa6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 VN1R5Q7Z5H4 357 aa6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 UTP4Q969X6 686 aaKnown RBP6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 RUSC1Q9BVN2 902 aa6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 EIF4G1Q04637 1599 aaKnown RBP6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 PEG3Q9GZU2 1588 aa6.38□□□□□ -1.39
HMGB3P20-201ENST00000417997 SMARCA2P51531 1590 aa6.37□□□□□ -1.39
HMGB3P20-201ENST00000417997 A0A1W2PP55 124 aa6.37□□□□□ -1.39
HMGB3P20-201ENST00000417997 SOX1O00570 391 aaPredicted RBP6.37□□□□□ -1.39
HMGB3P20-201ENST00000417997 TM4SF5O14894 197 aa6.37□□□□□ -1.39
HMGB3P20-201ENST00000417997 DHX15O43143 795 aaKnown RBP6.37□□□□□ -1.39
HMGB3P20-201ENST00000417997 GALNT12Q8IXK2 581 aa6.37□□□□□ -1.39
HMGB3P20-201ENST00000417997 BHLHE41Q9C0J9 482 aaPredicted RBP6.37□□□□□ -1.39
HMGB3P20-201ENST00000417997 LIN7BQ9HAP6 207 aa6.37□□□□□ -1.39
HMGB3P20-201ENST00000417997 CPNE3O75131 537 aaKnown RBP6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 FSTP19883 344 aa6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 GSTM4Q03013 218 aa6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 SPRED3Q2MJR0 410 aa6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 FDX2Q6P4F2 183 aa6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 NIF3L1Q9GZT8 377 aa6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 RNF208Q9H0X6 261 aa6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 EHD4Q9H223 541 aa6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 STOML1Q9UBI4 398 aa6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 RAXQ9Y2V3 346 aa6.36□□□□□ -1.39
HMGB3P20-201ENST00000417997 A0A096LPE4 126 aa6.35□□□□□ -1.39
HMGB3P20-201ENST00000417997 A0A1W2PPZ6 126 aa6.35□□□□□ -1.39
HMGB3P20-201ENST00000417997 SOWAHDA6NJG2 315 aa6.35□□□□□ -1.39
HMGB3P20-201ENST00000417997 ESRRAP11474 423 aaPredicted RBP6.35□□□□□ -1.39
HMGB3P20-201ENST00000417997 CITED4Q96RK1 184 aa6.35□□□□□ -1.39
HMGB3P20-201ENST00000417997 KCNF1Q9H3M0 494 aa6.35□□□□□ -1.39
HMGB3P20-201ENST00000417997 NPHS2Q9NP85 383 aa6.35□□□□□ -1.39
HMGB3P20-201ENST00000417997 GAS2O43903 313 aaKnown RBP6.34□□□□□ -1.39
HMGB3P20-201ENST00000417997 GADD45BO75293 160 aaPredicted RBP6.34□□□□□ -1.39
HMGB3P20-201ENST00000417997 GRIA4P48058 902 aa6.34□□□□□ -1.39
HMGB3P20-201ENST00000417997 PCDH1Q08174 1060 aa6.34□□□□□ -1.39
HMGB3P20-201ENST00000417997 NUTM2GQ5VZR2 741 aa6.34□□□□□ -1.39
HMGB3P20-201ENST00000417997 ANKRD34AQ69YU3 496 aa6.34□□□□□ -1.39
HMGB3P20-201ENST00000417997 CCNJLQ8IV13 435 aa6.34□□□□□ -1.39
HMGB3P20-201ENST00000417997 ARMC10Q8N2F6 343 aa6.34□□□□□ -1.39
HMGB3P20-201ENST00000417997 FAM129BQ96TA1 746 aa6.34□□□□□ -1.39
HMGB3P20-201ENST00000417997 EIF1AYO14602 144 aaKnown RBP6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 GPR182O15218 404 aa6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 BRD1O95696 1058 aa6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 PREPP48147 710 aa6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 UVSSAQ2YD98 709 aa6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 ARTNQ5T4W7 220 aa6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 C12orf50Q8NA57 414 aaPredicted RBP6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 FAM46AQ96IP4 442 aaKnown RBP6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 MYRFLQ96LU7 910 aa6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 TCF12Q99081 682 aa6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 CLEC4MQ9H2X3 399 aaPredicted RBP6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 ZFP64Q9NPA5 681 aa6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 BAZ1BQ9UIG0 1483 aaKnown RBP6.33□□□□□ -1.4
HMGB3P20-201ENST00000417997 LOC100289279A0A1B0GTE1 492 aa6.32□□□□□ -1.4
HMGB3P20-201ENST00000417997 BMP3P12645 472 aa6.32□□□□□ -1.4
HMGB3P20-201ENST00000417997 RXRBP28702 533 aa6.32□□□□□ -1.4
HMGB3P20-201ENST00000417997 NBPF11Q86T75 865 aa6.32□□□□□ -1.4
HMGB3P20-201ENST00000417997 TRIM42Q8IWZ5 723 aa6.32□□□□□ -1.4
HMGB3P20-201ENST00000417997 CCDC74AQ96AQ1 378 aa6.32□□□□□ -1.4
HMGB3P20-201ENST00000417997 DMRTB1Q96MA1 342 aa6.32□□□□□ -1.4
HMGB3P20-201ENST00000417997 SOX17Q9H6I2 414 aaPredicted RBP6.32□□□□□ -1.4
HMGB3P20-201ENST00000417997 ATAD2BQ9ULI0 1458 aa6.32□□□□□ -1.4
HMGB3P20-201ENST00000417997 HMGXB3Q12766 1538 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 HMX2A2RU54 273 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 IGLV1-40P01703 118 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 MAPK1P28482 360 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 LRP8Q14114 963 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 ZNF423Q2M1K9 1284 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 KIAA0319Q5VV43 1072 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 FAM20CQ8IXL6 584 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 CSRNP1Q96S65 589 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 DNAJC25Q9H1X3 360 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 C7orf69Q9H7B7 122 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 CYP4F12Q9HCS2 524 aa6.31□□□□□ -1.4
HMGB3P20-201ENST00000417997 GNEQ9Y223 722 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms