RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TAF1P21675 1872 aa17.71■□□□□ 0.43
USP4-203ENST00000415188 WDR33Q9C0J8 1336 aaKnown RBP17.71■□□□□ 0.43
USP4-203ENST00000415188 MBD3O95983 291 aa17.7■□□□□ 0.42
USP4-203ENST00000415188 DPP8Q6V1X1 898 aaPredicted RBP17.7■□□□□ 0.42
USP4-203ENST00000415188 TICAM2Q86XR7 235 aa17.7■□□□□ 0.42
USP4-203ENST00000415188 RTFDC1Q9BY42 306 aaPredicted RBP17.7■□□□□ 0.42
USP4-203ENST00000415188 CLEC11AQ9Y240 323 aa17.7■□□□□ 0.42
USP4-203ENST00000415188 CCDC171Q6TFL3 1326 aa17.7■□□□□ 0.42
USP4-203ENST00000415188 RFX5P48382 616 aaPredicted RBP17.69■□□□□ 0.42
USP4-203ENST00000415188 TRIM28Q13263 835 aaKnown RBP17.69■□□□□ 0.42
USP4-203ENST00000415188 MPNDQ8N594 471 aa17.69■□□□□ 0.42
USP4-203ENST00000415188 ZSCAN31Q96LW9 406 aaPredicted RBP17.69■□□□□ 0.42
USP4-203ENST00000415188 LIMCH1Q9UPQ0 1083 aa17.69■□□□□ 0.42
USP4-203ENST00000415188 COL4A1P02462 1669 aa17.69■□□□□ 0.42
USP4-203ENST00000415188 LTBP1Q14766 1721 aa17.69■□□□□ 0.42
USP4-203ENST00000415188 IRS4O14654 1257 aaPredicted RBP17.69■□□□□ 0.42
USP4-203ENST00000415188 SCNN1DP51172 638 aa17.69■□□□□ 0.42
USP4-203ENST00000415188 SF3B3Q15393 1217 aaKnown RBP17.69■□□□□ 0.42
USP4-203ENST00000415188 VPS53Q5VIR6 699 aa17.69■□□□□ 0.42
USP4-203ENST00000415188 CELF1Q92879 486 aaKnown RBP17.69■□□□□ 0.42
USP4-203ENST00000415188 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.69■□□□□ 0.42
USP4-203ENST00000415188 PASKQ96RG2 1323 aa17.68■□□□□ 0.42
USP4-203ENST00000415188 ADAMTSL1Q8N6G6 1762 aa17.68■□□□□ 0.42
USP4-203ENST00000415188 ITGBL1O95965 494 aaPredicted RBP17.68■□□□□ 0.42
USP4-203ENST00000415188 ZKSCAN1P17029 563 aaPredicted RBP17.68■□□□□ 0.42
USP4-203ENST00000415188 ATP5JP18859 108 aa17.68■□□□□ 0.42
USP4-203ENST00000415188 EPS15P42566 896 aa17.68■□□□□ 0.42
USP4-203ENST00000415188 MAP1SQ66K74 1059 aaPredicted RBP17.68■□□□□ 0.42
USP4-203ENST00000415188 SUPT20HQ8NEM7 779 aa17.68■□□□□ 0.42
USP4-203ENST00000415188 JARID2Q92833 1246 aaPredicted RBP17.68■□□□□ 0.42
USP4-203ENST00000415188 SH2B1Q9NRF2 756 aaPredicted RBP17.68■□□□□ 0.42
USP4-203ENST00000415188 CREBZFQ9NS37 354 aa17.68■□□□□ 0.42
USP4-203ENST00000415188 PCNTO95613 3336 aa17.68■□□□□ 0.42
USP4-203ENST00000415188 PDIA4P13667 645 aaKnown RBP17.67■□□□□ 0.42
USP4-203ENST00000415188 CASP7P55210 303 aa17.67■□□□□ 0.42
USP4-203ENST00000415188 EPHA10Q5JZY3 1008 aa17.67■□□□□ 0.42
USP4-203ENST00000415188 PNMA8AQ86V59 439 aaPredicted RBP17.67■□□□□ 0.42
USP4-203ENST00000415188 RASEFQ8IZ41 740 aa17.67■□□□□ 0.42
USP4-203ENST00000415188 ZSWIM6Q9HCJ5 1215 aa17.67■□□□□ 0.42
USP4-203ENST00000415188 MED23Q9ULK4 1368 aa17.67■□□□□ 0.42
USP4-203ENST00000415188 DUOX1Q9NRD9 1551 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 PSMA5P28066 241 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 LMOD1P29536 600 aaPredicted RBP17.66■□□□□ 0.42
USP4-203ENST00000415188 PTPN12Q05209 780 aaKnown RBP17.66■□□□□ 0.42
USP4-203ENST00000415188 CXCL9Q07325 125 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 KIAA2012Q0VF49 1180 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 NECTIN1Q15223 517 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 RNF20Q5VTR2 975 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 GAS2L3Q86XJ1 694 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 ZBTB38Q8NAP3 1195 aaPredicted RBP17.66■□□□□ 0.42
USP4-203ENST00000415188 CCDC8Q9H0W5 538 aaPredicted RBP17.66■□□□□ 0.42
USP4-203ENST00000415188 VPS33BQ9H267 617 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 MKRN1Q9UHC7 482 aaKnown RBP17.66■□□□□ 0.42
USP4-203ENST00000415188 ZNRF3Q9ULT6 936 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 CYP46A1Q9Y6A2 500 aa17.66■□□□□ 0.42
USP4-203ENST00000415188 H7C1W4 665 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 PRPF40AO75400 957 aaKnown RBP17.65■□□□□ 0.42
USP4-203ENST00000415188 AK2P54819 239 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 NMIQ13287 307 aaPredicted RBP17.65■□□□□ 0.42
USP4-203ENST00000415188 TNNI3KQ59H18 835 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 IFFO2Q5TF58 517 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 UBE3BQ7Z3V4 1068 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 TMC4Q7Z404 712 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 MAP4K1Q92918 833 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 FSD1Q9BTV5 496 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 PANK2Q9BZ23 570 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 SIL1Q9H173 461 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 HMG20BQ9P0W2 317 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 FPGT-TNNI3KV9GXZ4 949 aa17.65■□□□□ 0.42
USP4-203ENST00000415188 CASTP20810 708 aaKnown RBP17.64■□□□□ 0.41
USP4-203ENST00000415188 PTH1RQ03431 593 aa17.64■□□□□ 0.41
USP4-203ENST00000415188 RUFY3Q7L099 469 aa17.64■□□□□ 0.41
USP4-203ENST00000415188 CCDC191Q8NCU4 936 aa17.64■□□□□ 0.41
USP4-203ENST00000415188 ALDH8A1Q9H2A2 487 aaPredicted RBP17.64■□□□□ 0.41
USP4-203ENST00000415188 GPR108Q9NPR9 543 aa17.64■□□□□ 0.41
USP4-203ENST00000415188 PDRG1Q9NUG6 133 aa17.64■□□□□ 0.41
USP4-203ENST00000415188 RBM8AQ9Y5S9 174 aaKnown RBP17.64■□□□□ 0.41
USP4-203ENST00000415188 RPAP1Q9BWH6 1393 aaPredicted RBP17.64■□□□□ 0.41
USP4-203ENST00000415188 LRRC37AA6NMS7 1700 aa17.64■□□□□ 0.41
USP4-203ENST00000415188 SPEF2Q9C093 1822 aa17.64■□□□□ 0.41
USP4-203ENST00000415188 RAD17O75943 681 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 ZSCAN23Q3MJ62 389 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 NOL8Q76FK4 1167 aaKnown RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 TMEM87AQ8NBN3 555 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 SYAP1Q96A49 352 aaPredicted RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 SEC31BQ9NQW1 1179 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 CWC25Q9NXE8 425 aaPredicted RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 NSFL1CQ9UNZ2 370 aaKnown RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 YDJCA8MPS7 323 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 PCCAP05165 728 aaPredicted RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 GPSM2P81274 684 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 CCDC173Q0VFZ6 552 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 TSGA10IPQ3SY00 556 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 CREB3L3Q68CJ9 461 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 CAVIN1Q6NZI2 390 aaKnown RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 ANP32BQ92688 251 aaKnown RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 JAKMIP1Q96N16 626 aaKnown RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 CCDC85AQ96PX6 553 aaPredicted RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 RTN4Q9NQC3 1192 aaKnown RBP17.63■□□□□ 0.41
USP4-203ENST00000415188 TLR7Q9NYK1 1049 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms