RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DHX29Q7Z478 1369 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 SLC8A1P32418 973 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 IARSP41252 1262 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 RUFY4Q6ZNE9 571 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 NUTM1Q86Y26 1132 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 NBPF7P0C2Y1 421 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 AFMP43652 599 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 IRX5P78411 483 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 ZNF710Q8N1W2 664 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 MAN1A2O60476 641 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 ZNF569Q5MCW4 686 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 CCDC124Q96CT7 223 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 MYO10Q9HD67 2058 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 HNRNPCL2B2RXH8 293 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 HNRNPCL1O60812 293 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 HCLS1P14317 486 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 PPP2R3AQ06190 1150 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 MFSD6Q6ZSS7 791 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 ZPR1O75312 459 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 RLBP1P12271 317 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 DENND2CQ68D51 928 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 SPATS2Q86XZ4 545 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 FNBP4Q8N3X1 1017 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 GGNBP2Q9H3C7 697 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 STK38LQ9Y2H1 464 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 STARD3NLO95772 234 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 LZTFL1Q9NQ48 299 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 KLHDC4Q8TBB5 520 aa14.93□□□□□ -0.02
CCDC88A-204ENST00000413716 SSFA2P28290 1259 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 PROCA1Q8NCQ7 364 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 PANK2Q9BZ23 570 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 HLA-DOAP06340 250 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 ASIC1P78348 528 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 IL1RAPL2Q9NP60 686 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 TRIM6Q9C030 488 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 CABP2Q9NPB3 220 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 HIP1RO75146 1068 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 CCT6AP40227 531 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 ANKRD20A3Q5VUR7 823 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 C8orf74Q6P047 294 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 MICU3Q86XE3 530 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 FAM200AQ8TCP9 573 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 STAG1Q8WVM7 1258 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 DDX21Q9NR30 783 aaKnown RBP eCLIP14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 CTTNBP2NLQ9P2B4 639 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 TRIM60Q495X7 471 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 CCDC93Q567U6 631 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 CCDC125Q86Z20 511 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 HMG20BQ9P0W2 317 aa14.92□□□□□ -0.02
CCDC88A-204ENST00000413716 PEX19P40855 299 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 GOLGA6BA6NDN3 693 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 TUBB2AQ13885 445 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 TUBB2BQ9BVA1 445 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 SERPINI2O75830 405 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 SLC26A6Q9BXS9 759 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 ARHGAP42A6NI28 874 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 STX10O60499 249 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 LEO1Q8WVC0 666 aaPredicted RBP14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 EPS15L1Q9UBC2 864 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 RTL1A6NKG5 1358 aa14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 ZRANB2O95218 330 aaKnown RBP eCLIP14.91□□□□□ -0.02
CCDC88A-204ENST00000413716 ZNF530Q6P9A1 599 aaPredicted RBP14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 BAG3O95817 575 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 VTI1AQ96AJ9 217 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 CLCN1P35523 988 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 PPP2R5CQ13362 524 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 KLHL40Q2TBA0 621 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 NRBF2Q96F24 287 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 LRRD1A4D1F6 860 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 FAM212AQ96EL1 285 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 DAPK3O43293 454 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 KRT5P13647 590 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 TRAF1Q13077 416 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 RPGRQ92834 1020 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 DAAM1Q9Y4D1 1078 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 ATP6V1AP38606 617 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 SESN3P58005 492 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 TMED1Q13445 227 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 KMT5BQ4FZB7 885 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 AOPEPQ8N6M6 819 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 TOM1L2Q6ZVM7 507 aa14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 PAWRQ96IZ0 340 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 ZNF830Q96NB3 372 aaPredicted RBP14.9□□□□□ -0.02
CCDC88A-204ENST00000413716 IFIT5Q13325 482 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 RBM27Q9P2N5 1060 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 MTMR3Q13615 1198 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 USP6NLQ92738 828 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 NUB1Q9Y5A7 615 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 SPOPO43791 374 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 HSP90AA4PQ58FG1 418 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 C6orf50Q9HD87 102 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 HGSO14964 777 aaPredicted RBP14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 GIMAP6Q6P9H5 292 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 BOLA2Q9H3K6 86 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 SLC12A2P55011 1212 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 CABS1Q96KC9 395 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 ANKRD30BQ9BXX2 1392 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 B4DLN1 442 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 MRPL12P52815 198 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 ARHGAP4P98171 946 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms