RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 APOBEC3FQ8IUX4 373 aaKnown RBP7.93□□□□□ -1.14
USP54-202ENST00000413442 RPAP2Q8IXW5 612 aaPredicted RBP7.93□□□□□ -1.14
USP54-202ENST00000413442 ZGPATQ8N5A5 531 aaKnown RBP7.93□□□□□ -1.14
USP54-202ENST00000413442 VGLL2Q8N8G2 317 aa7.93□□□□□ -1.14
USP54-202ENST00000413442 CCDC102AQ96A19 550 aa7.93□□□□□ -1.14
USP54-202ENST00000413442 ZNF594Q96JF6 807 aaPredicted RBP7.93□□□□□ -1.14
USP54-202ENST00000413442 KCNQ5Q9NR82 932 aa7.93□□□□□ -1.14
USP54-202ENST00000413442 SERPINA10Q9UK55 444 aa7.93□□□□□ -1.14
USP54-202ENST00000413442 DDX19BQ9UMR2 479 aa7.93□□□□□ -1.14
USP54-202ENST00000413442 LRRFIP2Q9Y608 721 aaKnown RBP7.93□□□□□ -1.14
USP54-202ENST00000413442 PDS5AQ29RF7 1337 aaKnown RBP7.93□□□□□ -1.14
USP54-202ENST00000413442 SRGAP3O43295 1099 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 MAP4K4O95819 1239 aaPredicted RBP7.92□□□□□ -1.14
USP54-202ENST00000413442 POTEIP0CG38 1075 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 POTEJP0CG39 1038 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 G3BP1Q13283 466 aaKnown RBP eCLIP7.92□□□□□ -1.14
USP54-202ENST00000413442 TNFAIP1Q13829 316 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 SCARF1Q14162 830 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 ATG9AQ7Z3C6 839 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 SAMD7Q7Z3H4 446 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 KRT26Q7Z3Y9 468 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 SLF2Q8IX21 1173 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 HELBQ8NG08 1087 aaPredicted RBP7.92□□□□□ -1.14
USP54-202ENST00000413442 SSH3Q8TE77 659 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 HOOK2Q96ED9 719 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 MEIS3Q99687 375 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 PUS3Q9BZE2 481 aaKnown RBP7.92□□□□□ -1.14
USP54-202ENST00000413442 RCAN3Q9UKA8 241 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 DENND2AQ9ULE3 1009 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 TLL2Q9Y6L7 1015 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 CNTNAP1P78357 1384 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 COL1A1P02452 1464 aaPredicted RBP7.92□□□□□ -1.14
USP54-202ENST00000413442 COL4A1P02462 1669 aa7.92□□□□□ -1.14
USP54-202ENST00000413442 WNT10BO00744 389 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 CA12O43570 354 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 TNNI2P48788 182 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 AAMPQ13685 434 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 MVPQ14764 893 aaKnown RBP7.91□□□□□ -1.14
USP54-202ENST00000413442 ATP2B3Q16720 1220 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 SUPT20HL1Q3ZLR7 823 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 TBC1D10BQ4KMP7 808 aaPredicted RBP7.91□□□□□ -1.14
USP54-202ENST00000413442 LRRC24Q50LG9 513 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 RBM26Q5T8P6 1007 aaKnown RBP7.91□□□□□ -1.14
USP54-202ENST00000413442 FKBP1CQ5VVH2 108 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 CST9Q5W186 159 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 SPTY2D1Q68D10 685 aaPredicted RBP7.91□□□□□ -1.14
USP54-202ENST00000413442 HHIPL2Q6UWX4 724 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 SAPCD2Q86UD0 394 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 ERC1Q8IUD2 1116 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 ZBED3Q96IU2 234 aaPredicted RBP7.91□□□□□ -1.14
USP54-202ENST00000413442 NOP58Q9Y2X3 529 aaKnown RBP7.91□□□□□ -1.14
USP54-202ENST00000413442 SALL1Q9NSC2 1324 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 ECM29Q5VYK3 1845 aa7.91□□□□□ -1.14
USP54-202ENST00000413442 HMMRO75330 724 aa7.9□□□□□ -1.14
USP54-202ENST00000413442 CELF2O95319 508 aaKnown RBP7.9□□□□□ -1.14
USP54-202ENST00000413442 GYG1P46976 350 aa7.9□□□□□ -1.14
USP54-202ENST00000413442 NOGQ13253 232 aa7.9□□□□□ -1.14
USP54-202ENST00000413442 POLA2Q14181 598 aa7.9□□□□□ -1.14
USP54-202ENST00000413442 MFSD14BQ5SR56 506 aa7.9□□□□□ -1.14
USP54-202ENST00000413442 ANGEL2Q5VTE6 544 aaKnown RBP7.9□□□□□ -1.14
USP54-202ENST00000413442 USP48Q86UV5 1035 aa7.9□□□□□ -1.14
USP54-202ENST00000413442 TMEM57Q8N5G2 664 aa7.9□□□□□ -1.14
USP54-202ENST00000413442 TRPM4Q8TD43 1214 aa7.9□□□□□ -1.14
USP54-202ENST00000413442 CLUAP1Q96AJ1 413 aa7.9□□□□□ -1.14
USP54-202ENST00000413442 ZNF512BQ96KM6 892 aaPredicted RBP7.9□□□□□ -1.14
USP54-202ENST00000413442 GPR101Q96P66 508 aaPredicted RBP7.9□□□□□ -1.14
USP54-202ENST00000413442 ABT1Q9ULW3 272 aaKnown RBP7.9□□□□□ -1.14
USP54-202ENST00000413442 ZNF646O15015 1829 aaPredicted RBP7.89□□□□□ -1.15
USP54-202ENST00000413442 WDR33Q9C0J8 1336 aaKnown RBP7.89□□□□□ -1.15
USP54-202ENST00000413442 WTIPA6NIX2 430 aaPredicted RBP7.89□□□□□ -1.15
USP54-202ENST00000413442 PPP1R12BO60237 982 aaPredicted RBP7.89□□□□□ -1.15
USP54-202ENST00000413442 LDHCP07864 332 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 UQCRFS1P1P0C7P4 283 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 INHBEP58166 350 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 SLC51AQ86UW1 340 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 FAM83AQ86UY5 434 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 KIAA0825Q8IV33 1275 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 FBXW7Q969H0 707 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 TEKT1Q969V4 418 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 FAM163AQ96GL9 167 aaPredicted RBP7.89□□□□□ -1.15
USP54-202ENST00000413442 BEGAINQ9BUH8 593 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 GLIS2Q9BZE0 524 aaPredicted RBP7.89□□□□□ -1.15
USP54-202ENST00000413442 RNF39Q9H2S5 420 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 GBA2Q9HCG7 927 aaPredicted RBP7.89□□□□□ -1.15
USP54-202ENST00000413442 GGA3Q9NZ52 723 aa7.89□□□□□ -1.15
USP54-202ENST00000413442 MYH13Q9UKX3 1938 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 SPDYE2BA6NHP3 402 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 RAB11FIP3O75154 756 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 SPDYE6P0CI01 402 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 BCAMP50895 628 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 MAP3K11Q16584 847 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 NBPF9Q3BBW0 867 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 CFAP100Q494V2 611 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 CCDC158Q5M9N0 1113 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 GORABQ5T7V8 394 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 RGMBQ6NW40 437 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 ARMC9Q7Z3E5 817 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 CERS3Q8IU89 383 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 ITPRIPQ8IWB1 547 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 CERS5Q8N5B7 392 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms