RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 CCDC102BQ68D86 513 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 TBC1D32Q96NH3 1257 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 STAP2Q9UGK3 403 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 WWC3Q9ULE0 1092 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 RGL2O15211 777 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 KIF5BP33176 963 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 HAND2P61296 217 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 NFIXQ14938 502 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 LARP1BQ659C4 914 aaKnown RBP9.97□□□□□ -0.81
SYNE1-211ENST00000413186 ZNF34Q8IZ26 560 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 CCDC47Q96A33 483 aaKnown RBP9.97□□□□□ -0.81
SYNE1-211ENST00000413186 FOXD4L6Q3SYB3 417 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-211ENST00000413186 TMEM67Q5HYA8 995 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 FOXD4L3Q6VB84 417 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-211ENST00000413186 BRIP1Q9BX63 1249 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 PLA2G12BQ9BX93 195 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 SEC31BQ9NQW1 1179 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 ROBO1Q9Y6N7 1651 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 NF2P35240 595 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 TTLL12Q14166 644 aaPredicted RBP9.96□□□□□ -0.81
SYNE1-211ENST00000413186 TEX11Q8IYF3 940 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 CLSTN1O94985 981 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 MBD4O95243 580 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 ZAP70P43403 619 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 FOSBP53539 338 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 CCDC93Q567U6 631 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 TTLL6Q8N841 843 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 JMYQ8N9B5 988 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 PUS3Q9BZE2 481 aaKnown RBP9.96□□□□□ -0.81
SYNE1-211ENST00000413186 MCM9Q9NXL9 1143 aa9.96□□□□□ -0.81
SYNE1-211ENST00000413186 SETD1AO15047 1707 aaKnown RBP9.96□□□□□ -0.81
SYNE1-211ENST00000413186 MIGA1Q8NAN2 632 aa9.96□□□□□ -0.82
SYNE1-211ENST00000413186 BICD2Q8TD16 824 aa9.96□□□□□ -0.82
SYNE1-211ENST00000413186 HAUS7Q99871 368 aa9.96□□□□□ -0.82
SYNE1-211ENST00000413186 RGPD8O14715 1765 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-211ENST00000413186 CCDC73Q6ZRK6 1079 aa9.96□□□□□ -0.82
SYNE1-211ENST00000413186 OSBPL3Q9H4L5 887 aa9.96□□□□□ -0.82
SYNE1-211ENST00000413186 SEC63Q9UGP8 760 aaKnown RBP9.96□□□□□ -0.82
SYNE1-211ENST00000413186 ATF5Q9Y2D1 282 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-211ENST00000413186 PDIA6Q15084 440 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 TICAM2Q86XR7 235 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 RTKN2Q8IZC4 609 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 HOOK2Q96ED9 719 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 KAT14Q9H8E8 782 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 NOL7Q9UMY1 257 aaKnown RBP9.95□□□□□ -0.82
SYNE1-211ENST00000413186 MRE11P49959 708 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 TOPAZ1Q8N9V7 1692 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 MFSD14BQ5SR56 506 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 FEZ1Q99689 392 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 VEZTQ9HBM0 779 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 COL14A1Q05707 1796 aaKnown RBP9.95□□□□□ -0.82
SYNE1-211ENST00000413186 GOLGA8AA7E2F4 631 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 GOLGA8BA8MQT2 603 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 TSPY3P0CV98 308 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 TSPY8P0CW00 308 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 GYG1P46976 350 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 TRAF1Q13077 416 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 WTAPQ15007 396 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 SLC15A2Q16348 729 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 GJA3Q9Y6H8 435 aa9.95□□□□□ -0.82
SYNE1-211ENST00000413186 PLSCR1O15162 318 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 SGSM2O43147 1006 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 GTF2IP78347 998 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 PICALMQ13492 652 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 DALRD3Q5D0E6 543 aaKnown RBP9.94□□□□□ -0.82
SYNE1-211ENST00000413186 JAG2Q9Y219 1238 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 USP42Q9H9J4 1324 aaKnown RBP9.94□□□□□ -0.82
SYNE1-211ENST00000413186 LETM1O95202 739 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-211ENST00000413186 GNAQP50148 359 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 GPR162Q16538 588 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 CCDC96Q2M329 555 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 RABL6Q3YEC7 729 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-211ENST00000413186 INTS5Q6P9B9 1019 aaKnown RBP9.94□□□□□ -0.82
SYNE1-211ENST00000413186 PIM2Q9P1W9 311 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 DBNLQ9UJU6 430 aaKnown RBP9.94□□□□□ -0.82
SYNE1-211ENST00000413186 GPAA1O43292 621 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 BCAMP50895 628 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 TMED8Q6PL24 325 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-211ENST00000413186 SF3B3Q15393 1217 aaKnown RBP9.94□□□□□ -0.82
SYNE1-211ENST00000413186 TEKT1Q969V4 418 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 PLCD4Q9BRC7 762 aa9.94□□□□□ -0.82
SYNE1-211ENST00000413186 C8orf34Q49A92 452 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 EPHA10Q5JZY3 1008 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 TTLL5Q6EMB2 1281 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 CCDC43Q96MW1 224 aaKnown RBP9.93□□□□□ -0.82
SYNE1-211ENST00000413186 TNIP1Q15025 636 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 CREB3L3Q68CJ9 461 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 CCDC83Q8IWF9 413 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 SIRT2Q8IXJ6 389 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 STX8Q9UNK0 236 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 ZNF532Q9HCE3 1301 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 H7C1D1 291 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 TRAK2O60296 914 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 DLGAP5Q15398 846 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 DRC7Q8IY82 874 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 PHKA1P46020 1223 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 STK38Q15208 465 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 UBE3CQ15386 1083 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 RBM26Q5T8P6 1007 aaKnown RBP9.93□□□□□ -0.82
SYNE1-211ENST00000413186 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms