RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 ECM29Q5VYK3 1845 aa28.08■■■□□ 2.09
MSH6-202ENST00000411819 DLGAP5Q15398 846 aa28.08■■■□□ 2.09
MSH6-202ENST00000411819 ALDH1L2Q3SY69 923 aa28.08■■■□□ 2.09
MSH6-202ENST00000411819 MOB2Q70IA6 237 aa28.08■■■□□ 2.09
MSH6-202ENST00000411819 AKAP11Q9UKA4 1901 aa28.08■■■□□ 2.09
MSH6-202ENST00000411819 CASP8AP2Q9UKL3 1982 aa28.08■■■□□ 2.09
MSH6-202ENST00000411819 UBE4AQ14139 1066 aa28.07■■■□□ 2.08
MSH6-202ENST00000411819 RABL6Q3YEC7 729 aaPredicted RBP28.07■■■□□ 2.08
MSH6-202ENST00000411819 RASAL3Q86YV0 1011 aa28.07■■■□□ 2.08
MSH6-202ENST00000411819 ANKRD44Q8N8A2 993 aa28.07■■■□□ 2.08
MSH6-202ENST00000411819 CCER2I3L3R5 266 aa28.06■■■□□ 2.08
MSH6-202ENST00000411819 MROH5Q6ZUA9 1318 aa28.06■■■□□ 2.08
MSH6-202ENST00000411819 GYG1P46976 350 aa28.05■■■□□ 2.08
MSH6-202ENST00000411819 ZBED3Q96IU2 234 aaPredicted RBP28.05■■■□□ 2.08
MSH6-202ENST00000411819 ARAP2Q8WZ64 1704 aa28.04■■■□□ 2.08
MSH6-202ENST00000411819 UBE2Q2LH0YL09 131 aa28.04■■■□□ 2.08
MSH6-202ENST00000411819 FKBP1AP62942 108 aaKnown RBP28.04■■■□□ 2.08
MSH6-202ENST00000411819 RIPOR2Q9Y4F9 1068 aa28.04■■■□□ 2.08
MSH6-202ENST00000411819 HIBADHP31937 336 aaKnown RBP28.03■■■□□ 2.08
MSH6-202ENST00000411819 CFAP100Q494V2 611 aa28.03■■■□□ 2.08
MSH6-202ENST00000411819 LRRC24Q50LG9 513 aa28.03■■■□□ 2.08
MSH6-202ENST00000411819 METTL24Q5JXM2 366 aa28.03■■■□□ 2.08
MSH6-202ENST00000411819 ABHD8Q96I13 439 aa28.03■■■□□ 2.08
MSH6-202ENST00000411819 USP44Q9H0E7 712 aa28.03■■■□□ 2.08
MSH6-202ENST00000411819 PCDHAC2Q9Y5I4 1007 aa28.03■■■□□ 2.08
MSH6-202ENST00000411819 COL1A1P02452 1464 aaPredicted RBP28.02■■■□□ 2.08
MSH6-202ENST00000411819 PRKG1Q13976 671 aa28.02■■■□□ 2.08
MSH6-202ENST00000411819 MYO1BO43795 1136 aa28.01■■■□□ 2.07
MSH6-202ENST00000411819 RBM5P52756 815 aaKnown RBP eCLIP28.01■■■□□ 2.07
MSH6-202ENST00000411819 MFSD14BQ5SR56 506 aa28.01■■■□□ 2.07
MSH6-202ENST00000411819 VPS37DQ86XT2 251 aa28.01■■■□□ 2.07
MSH6-202ENST00000411819 TRMT2AQ8IZ69 625 aaKnown RBP28.01■■■□□ 2.07
MSH6-202ENST00000411819 MTMR14Q8NCE2 650 aa28.01■■■□□ 2.07
MSH6-202ENST00000411819 TDRD7Q8NHU6 1098 aaKnown RBP28.01■■■□□ 2.07
MSH6-202ENST00000411819 KLHDC4Q8TBB5 520 aa28.01■■■□□ 2.07
MSH6-202ENST00000411819 FAM84BQ96KN1 310 aaPredicted RBP28.01■■■□□ 2.07
MSH6-202ENST00000411819 SAGE1Q9NXZ1 904 aa28.01■■■□□ 2.07
MSH6-202ENST00000411819 FAM205AQ6ZU69 1335 aa28■■■□□ 2.07
MSH6-202ENST00000411819 CLRN2A0PK11 232 aa28■■■□□ 2.07
MSH6-202ENST00000411819 TRPA1O75762 1119 aa28■■■□□ 2.07
MSH6-202ENST00000411819 CSRNP1Q96S65 589 aa28■■■□□ 2.07
MSH6-202ENST00000411819 SPDYE2BA6NHP3 402 aa27.99■■■□□ 2.07
MSH6-202ENST00000411819 CT47B1P0C2W7 299 aaPredicted RBP27.99■■■□□ 2.07
MSH6-202ENST00000411819 SPDYE6P0CI01 402 aa27.99■■■□□ 2.07
MSH6-202ENST00000411819 ARMC9Q7Z3E5 817 aa27.99■■■□□ 2.07
MSH6-202ENST00000411819 DEFB129Q9H1M3 183 aa27.99■■■□□ 2.07
MSH6-202ENST00000411819 VEZTQ9HBM0 779 aa27.99■■■□□ 2.07
MSH6-202ENST00000411819 RNF186Q9NXI6 227 aa27.99■■■□□ 2.07
MSH6-202ENST00000411819 IQSEC3Q9UPP2 1182 aaPredicted RBP27.98■■■□□ 2.07
MSH6-202ENST00000411819 NOB1Q9ULX3 412 aaKnown RBP27.97■■■□□ 2.07
MSH6-202ENST00000411819 FRAT2O75474 233 aaPredicted RBP27.96■■■□□ 2.07
MSH6-202ENST00000411819 PDE8BO95263 885 aa27.96■■■□□ 2.07
MSH6-202ENST00000411819 CAVIN4Q5BKX8 364 aa27.96■■■□□ 2.07
MSH6-202ENST00000411819 REM2Q8IYK8 340 aaPredicted RBP27.96■■■□□ 2.07
MSH6-202ENST00000411819 PRMT6Q96LA8 375 aaPredicted RBP27.96■■■□□ 2.07
MSH6-202ENST00000411819 ANGEL1Q9UNK9 670 aaKnown RBP27.96■■■□□ 2.07
MSH6-202ENST00000411819 TTF2Q9UNY4 1162 aaKnown RBP27.96■■■□□ 2.07
MSH6-202ENST00000411819 PPP2R3BQ9Y5P8 575 aa27.96■■■□□ 2.07
MSH6-202ENST00000411819 UBTFL1P0CB47 393 aaPredicted RBP27.95■■■□□ 2.06
MSH6-202ENST00000411819 MKRN3Q13064 507 aaKnown RBP27.95■■■□□ 2.06
MSH6-202ENST00000411819 CHAF1AQ13111 956 aaPredicted RBP27.95■■■□□ 2.06
MSH6-202ENST00000411819 VGLL2Q8N8G2 317 aa27.95■■■□□ 2.06
MSH6-202ENST00000411819 MCOLN1Q9GZU1 580 aa27.95■■■□□ 2.06
MSH6-202ENST00000411819 FZD1Q9UP38 647 aa27.95■■■□□ 2.06
MSH6-202ENST00000411819 DGKZQ13574 1117 aa27.94■■■□□ 2.06
MSH6-202ENST00000411819 API5Q9BZZ5 524 aaKnown RBP27.94■■■□□ 2.06
MSH6-202ENST00000411819 AOX1Q06278 1338 aa27.93■■■□□ 2.06
MSH6-202ENST00000411819 PTPN12Q05209 780 aaKnown RBP27.93■■■□□ 2.06
MSH6-202ENST00000411819 FBXO33Q7Z6M2 555 aa27.93■■■□□ 2.06
MSH6-202ENST00000411819 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.93■■■□□ 2.06
MSH6-202ENST00000411819 SSC5DA1L4H1 1573 aa27.93■■■□□ 2.06
MSH6-202ENST00000411819 MYH13Q9UKX3 1938 aa27.92■■■□□ 2.06
MSH6-202ENST00000411819 PUM3Q15397 648 aaKnown RBP27.92■■■□□ 2.06
MSH6-202ENST00000411819 SERPINA10Q9UK55 444 aa27.92■■■□□ 2.06
MSH6-202ENST00000411819 CCDC85CA6NKD9 419 aa27.91■■■□□ 2.06
MSH6-202ENST00000411819 IFIT1P09914 478 aaKnown RBP27.91■■■□□ 2.06
MSH6-202ENST00000411819 EYA2O00167 538 aa27.9■■■□□ 2.06
MSH6-202ENST00000411819 PPP1R12BO60237 982 aaPredicted RBP27.9■■■□□ 2.06
MSH6-202ENST00000411819 RFX5P48382 616 aaPredicted RBP27.9■■■□□ 2.06
MSH6-202ENST00000411819 KIF16BQ96L93 1317 aa27.9■■■□□ 2.06
MSH6-202ENST00000411819 BCAMP50895 628 aa27.89■■■□□ 2.06
MSH6-202ENST00000411819 RARSP54136 660 aaKnown RBP27.89■■■□□ 2.06
MSH6-202ENST00000411819 TNFAIP1Q13829 316 aa27.89■■■□□ 2.06
MSH6-202ENST00000411819 SUPT20HL1Q3ZLR7 823 aa27.89■■■□□ 2.06
MSH6-202ENST00000411819 TBC1D22AQ8WUA7 517 aa27.89■■■□□ 2.06
MSH6-202ENST00000411819 TDRD3Q9H7E2 651 aaKnown RBP27.89■■■□□ 2.06
MSH6-202ENST00000411819 CRKP46108 304 aa27.88■■■□□ 2.05
MSH6-202ENST00000411819 RASA3Q14644 834 aa27.88■■■□□ 2.05
MSH6-202ENST00000411819 SPDYE2Q495Y8 402 aa27.88■■■□□ 2.05
MSH6-202ENST00000411819 LDLRAD1Q5T700 205 aa27.88■■■□□ 2.05
MSH6-202ENST00000411819 SIL1Q9H173 461 aa27.88■■■□□ 2.05
MSH6-202ENST00000411819 ZNF70Q9UC06 446 aaPredicted RBP27.88■■■□□ 2.05
MSH6-202ENST00000411819 SLC5A1P13866 664 aa27.87■■■□□ 2.05
MSH6-202ENST00000411819 FGFR2P21802 821 aa27.87■■■□□ 2.05
MSH6-202ENST00000411819 SREBF2Q12772 1141 aa27.87■■■□□ 2.05
MSH6-202ENST00000411819 GRIK5Q16478 980 aa27.87■■■□□ 2.05
MSH6-202ENST00000411819 NBPF12Q5TAG4 269 aaPredicted RBP27.87■■■□□ 2.05
MSH6-202ENST00000411819 DZIP1LQ8IYY4 767 aaKnown RBP27.87■■■□□ 2.05
MSH6-202ENST00000411819 LRRFIP2Q9Y608 721 aaKnown RBP27.87■■■□□ 2.05
MSH6-202ENST00000411819 HDAC5Q9UQL6 1122 aa27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms