RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 ATP2B3Q16720 1220 aa13.73□□□□□ -0.21
LINC00539-201ENST00000411525 AOC3Q16853 763 aa13.73□□□□□ -0.21
LINC00539-201ENST00000411525 DPP8Q6V1X1 898 aaPredicted RBP13.73□□□□□ -0.21
LINC00539-201ENST00000411525 MPNDQ8N594 471 aa13.73□□□□□ -0.21
LINC00539-201ENST00000411525 ADARB2Q9NS39 739 aaKnown RBP13.73□□□□□ -0.21
LINC00539-201ENST00000411525 GPRC5DQ9NZD1 345 aa13.73□□□□□ -0.21
LINC00539-201ENST00000411525 TRIM6-TRIM34B2RNG4 842 aa13.72□□□□□ -0.21
LINC00539-201ENST00000411525 PDE8BO95263 885 aa13.72□□□□□ -0.21
LINC00539-201ENST00000411525 TNIP1Q15025 636 aa13.72□□□□□ -0.21
LINC00539-201ENST00000411525 PUM3Q15397 648 aaKnown RBP13.72□□□□□ -0.21
LINC00539-201ENST00000411525 TBC1D9Q6ZT07 1266 aa13.72□□□□□ -0.21
LINC00539-201ENST00000411525 CELF1Q92879 486 aaKnown RBP13.72□□□□□ -0.21
LINC00539-201ENST00000411525 NEUROD6Q96NK8 337 aa13.72□□□□□ -0.21
LINC00539-201ENST00000411525 BEGAINQ9BUH8 593 aa13.72□□□□□ -0.21
LINC00539-201ENST00000411525 BSDC1Q9NW68 430 aaPredicted RBP13.72□□□□□ -0.21
LINC00539-201ENST00000411525 LRRC37AA6NMS7 1700 aa13.71□□□□□ -0.21
LINC00539-201ENST00000411525 ATP5JP18859 108 aa13.71□□□□□ -0.21
LINC00539-201ENST00000411525 TIMM10P62072 90 aa13.71□□□□□ -0.21
LINC00539-201ENST00000411525 CHRNDQ07001 517 aa13.71□□□□□ -0.21
LINC00539-201ENST00000411525 CXCL9Q07325 125 aa13.71□□□□□ -0.21
LINC00539-201ENST00000411525 GRAPQ13588 217 aa13.71□□□□□ -0.21
LINC00539-201ENST00000411525 CASC1Q6TDU7 716 aa13.71□□□□□ -0.21
LINC00539-201ENST00000411525 GRAPLQ8TC17 118 aaPredicted RBP13.71□□□□□ -0.21
LINC00539-201ENST00000411525 RILPL2Q969X0 211 aa13.71□□□□□ -0.21
LINC00539-201ENST00000411525 SLC5A1P13866 664 aa13.7□□□□□ -0.22
LINC00539-201ENST00000411525 ADORA1P30542 326 aa13.7□□□□□ -0.22
LINC00539-201ENST00000411525 LBX1P52954 281 aa13.7□□□□□ -0.22
LINC00539-201ENST00000411525 RPS8P62241 208 aaKnown RBP13.7□□□□□ -0.22
LINC00539-201ENST00000411525 KIAA2012Q0VF49 1180 aa13.7□□□□□ -0.22
LINC00539-201ENST00000411525 CIAPIN1Q6FI81 312 aa13.7□□□□□ -0.22
LINC00539-201ENST00000411525 PAXIP1Q6ZW49 1069 aaPredicted RBP13.7□□□□□ -0.22
LINC00539-201ENST00000411525 ZC3H15Q8WU90 426 aaKnown RBP13.7□□□□□ -0.22
LINC00539-201ENST00000411525 LPIN2Q92539 896 aa13.7□□□□□ -0.22
LINC00539-201ENST00000411525 XAGE2Q96GT9 111 aa13.7□□□□□ -0.22
LINC00539-201ENST00000411525 RBM19Q9Y4C8 960 aaKnown RBP13.7□□□□□ -0.22
LINC00539-201ENST00000411525 EIF5BO60841 1220 aaKnown RBP13.69□□□□□ -0.22
LINC00539-201ENST00000411525 MAP4K4O95819 1239 aaPredicted RBP13.69□□□□□ -0.22
LINC00539-201ENST00000411525 FGFR2P21802 821 aa13.69□□□□□ -0.22
LINC00539-201ENST00000411525 GORABQ5T7V8 394 aa13.69□□□□□ -0.22
LINC00539-201ENST00000411525 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.69□□□□□ -0.22
LINC00539-201ENST00000411525 EVI5LQ96CN4 794 aa13.69□□□□□ -0.22
LINC00539-201ENST00000411525 CAPNS2Q96L46 248 aa13.69□□□□□ -0.22
LINC00539-201ENST00000411525 BOLA2Q9H3K6 86 aa13.69□□□□□ -0.22
LINC00539-201ENST00000411525 THSD7BQ9C0I4 1608 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 TAF5LO75529 589 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 SEC24BO95487 1268 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 GMPSP49915 693 aaPredicted RBP13.68□□□□□ -0.22
LINC00539-201ENST00000411525 CCDC158Q5M9N0 1113 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 TTC39AQ5SRH9 613 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 HELBQ8NG08 1087 aaPredicted RBP13.68□□□□□ -0.22
LINC00539-201ENST00000411525 GPR101Q96P66 508 aaPredicted RBP13.68□□□□□ -0.22
LINC00539-201ENST00000411525 HAUS7Q99871 368 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 UPF2Q9HAU5 1272 aaKnown RBP13.68□□□□□ -0.22
LINC00539-201ENST00000411525 PGAP2Q9UHJ9 254 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 MINPP1Q9UNW1 487 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 TLL2Q9Y6L7 1015 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 RFX7Q2KHR2 1363 aa13.68□□□□□ -0.22
LINC00539-201ENST00000411525 POLR2AP24928 1970 aaKnown RBP13.67□□□□□ -0.22
LINC00539-201ENST00000411525 H7C1D1 291 aa13.67□□□□□ -0.22
LINC00539-201ENST00000411525 IFIT1P09914 478 aaKnown RBP13.67□□□□□ -0.22
LINC00539-201ENST00000411525 HSPA8P11142 646 aaKnown RBP13.67□□□□□ -0.22
LINC00539-201ENST00000411525 MAP2K2P36507 400 aa13.67□□□□□ -0.22
LINC00539-201ENST00000411525 MFAP1P55081 439 aaKnown RBP13.67□□□□□ -0.22
LINC00539-201ENST00000411525 CST9Q5W186 159 aa13.67□□□□□ -0.22
LINC00539-201ENST00000411525 HHIPL1Q96JK4 782 aa13.67□□□□□ -0.22
LINC00539-201ENST00000411525 ANKRD2Q9GZV1 360 aa13.67□□□□□ -0.22
LINC00539-201ENST00000411525 TRAF5O00463 557 aa13.66□□□□□ -0.22
LINC00539-201ENST00000411525 RAD17O75943 681 aa13.66□□□□□ -0.22
LINC00539-201ENST00000411525 CHMLP26374 656 aa13.66□□□□□ -0.22
LINC00539-201ENST00000411525 CDC37L1Q7L3B6 337 aa13.66□□□□□ -0.22
LINC00539-201ENST00000411525 SLC51AQ86UW1 340 aa13.66□□□□□ -0.22
LINC00539-201ENST00000411525 DNAJC2Q99543 621 aaKnown RBP13.66□□□□□ -0.22
LINC00539-201ENST00000411525 AKAP11Q9UKA4 1901 aa13.65□□□□□ -0.22
LINC00539-201ENST00000411525 CA12O43570 354 aa13.65□□□□□ -0.22
LINC00539-201ENST00000411525 CELF2O95319 508 aaKnown RBP13.65□□□□□ -0.22
LINC00539-201ENST00000411525 GRM1Q13255 1194 aa13.65□□□□□ -0.22
LINC00539-201ENST00000411525 UBE4AQ14139 1066 aa13.65□□□□□ -0.22
LINC00539-201ENST00000411525 WASHC4Q2M389 1173 aa13.65□□□□□ -0.22
LINC00539-201ENST00000411525 CYP4F22Q6NT55 531 aa13.65□□□□□ -0.22
LINC00539-201ENST00000411525 DPF2Q92785 391 aa13.65□□□□□ -0.22
LINC00539-201ENST00000411525 ZNF512BQ96KM6 892 aaPredicted RBP13.65□□□□□ -0.22
LINC00539-201ENST00000411525 EYA3Q99504 573 aa13.65□□□□□ -0.22
LINC00539-201ENST00000411525 CNOT7Q9UIV1 285 aaKnown RBP13.65□□□□□ -0.22
LINC00539-201ENST00000411525 SNAP23O00161 211 aa13.64□□□□□ -0.23
LINC00539-201ENST00000411525 HIP1O00291 1037 aa13.64□□□□□ -0.23
LINC00539-201ENST00000411525 UQCRFS1P1P0C7P4 283 aa13.64□□□□□ -0.23
LINC00539-201ENST00000411525 ARID4AP29374 1257 aaPredicted RBP13.64□□□□□ -0.23
LINC00539-201ENST00000411525 KCNJ4P48050 445 aa13.64□□□□□ -0.23
LINC00539-201ENST00000411525 FMR1Q06787 632 aaKnown RBP eCLIP13.64□□□□□ -0.23
LINC00539-201ENST00000411525 CCDC102BQ68D86 513 aa13.64□□□□□ -0.23
LINC00539-201ENST00000411525 SAPCD2Q86UD0 394 aa13.64□□□□□ -0.23
LINC00539-201ENST00000411525 ESYT1Q9BSJ8 1104 aa13.64□□□□□ -0.23
LINC00539-201ENST00000411525 FSD1Q9BTV5 496 aa13.64□□□□□ -0.23
LINC00539-201ENST00000411525 NSFL1CQ9UNZ2 370 aaKnown RBP13.64□□□□□ -0.23
LINC00539-201ENST00000411525 PHKA1P46020 1223 aa13.63□□□□□ -0.23
LINC00539-201ENST00000411525 EDC3Q96F86 508 aaKnown RBP13.63□□□□□ -0.23
LINC00539-201ENST00000411525 GLIS2Q9BZE0 524 aaPredicted RBP13.63□□□□□ -0.23
LINC00539-201ENST00000411525 DIAPH3Q9NSV4 1193 aa13.63□□□□□ -0.23
LINC00539-201ENST00000411525 PAG1Q9NWQ8 432 aa13.63□□□□□ -0.23
LINC00539-201ENST00000411525 NDUFB9Q9Y6M9 179 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms