RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TERF2Q15554 542 aa24.43■■□□□ 1.5
CTCF-202ENST00000401394 KCNH5Q8NCM2 988 aa24.43■■□□□ 1.5
CTCF-202ENST00000401394 SPECC1Q5M775 1068 aa24.42■■□□□ 1.5
CTCF-202ENST00000401394 MROH7-TTC4A0A0A0MT08 1334 aa24.42■■□□□ 1.5
CTCF-202ENST00000401394 SLU7O95391 586 aaKnown RBP24.42■■□□□ 1.5
CTCF-202ENST00000401394 ADORA1P30542 326 aa24.42■■□□□ 1.5
CTCF-202ENST00000401394 SCARF1Q14162 830 aa24.42■■□□□ 1.5
CTCF-202ENST00000401394 CHRNA2Q15822 529 aa24.42■■□□□ 1.5
CTCF-202ENST00000401394 ZNF396Q96N95 335 aaPredicted RBP24.42■■□□□ 1.5
CTCF-202ENST00000401394 ZBTB3Q9H5J0 574 aa24.42■■□□□ 1.5
CTCF-202ENST00000401394 TMEM232C9JQI7 657 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 WASHC4Q2M389 1173 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 INCENPQ9NQS7 918 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 PODXL2Q9NZ53 605 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 ZNF330Q9Y3S2 320 aaPredicted RBP24.41■■□□□ 1.5
CTCF-202ENST00000401394 ZNF202O95125 648 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 NCAPHQ15003 741 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 KRT222Q8N1A0 295 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 CHMP4AQ9BY43 222 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 SENP2Q9HC62 589 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 DNAI1Q9UI46 699 aa24.41■■□□□ 1.5
CTCF-202ENST00000401394 CTAGE5O15320 804 aa24.4■■□□□ 1.5
CTCF-202ENST00000401394 HOMER1Q86YM7 354 aa24.4■■□□□ 1.5
CTCF-202ENST00000401394 CLIC6Q96NY7 704 aa24.4■■□□□ 1.5
CTCF-202ENST00000401394 KLF18A0A0U1RQI7 1052 aa24.4■■□□□ 1.5
CTCF-202ENST00000401394 FOXO4P98177 505 aa24.4■■□□□ 1.5
CTCF-202ENST00000401394 SYCP1Q15431 976 aa24.4■■□□□ 1.5
CTCF-202ENST00000401394 LLPHQ9BRT6 129 aaKnown RBP24.4■■□□□ 1.5
CTCF-202ENST00000401394 HSD3B7Q9H2F3 369 aa24.4■■□□□ 1.5
CTCF-202ENST00000401394 ANKARQ7Z5J8 1434 aa24.4■■□□□ 1.5
CTCF-202ENST00000401394 SEC31AO94979 1220 aaKnown RBP24.39■■□□□ 1.5
CTCF-202ENST00000401394 IFIT1P09914 478 aaKnown RBP24.39■■□□□ 1.5
CTCF-202ENST00000401394 PDIA4P13667 645 aaKnown RBP24.39■■□□□ 1.5
CTCF-202ENST00000401394 C8orf76Q96K31 380 aa24.39■■□□□ 1.5
CTCF-202ENST00000401394 KDM6AO15550 1401 aaPredicted RBP24.39■■□□□ 1.5
CTCF-202ENST00000401394 ZMYM1Q5SVZ6 1142 aa24.39■■□□□ 1.49
CTCF-202ENST00000401394 ERO1AQ96HE7 468 aa24.39■■□□□ 1.49
CTCF-202ENST00000401394 ORC3Q9UBD5 711 aaPredicted RBP24.39■■□□□ 1.49
CTCF-202ENST00000401394 GOLGA8BA8MQT2 603 aa24.39■■□□□ 1.49
CTCF-202ENST00000401394 CASP7P55210 303 aa24.39■■□□□ 1.49
CTCF-202ENST00000401394 ADALQ6DHV7 355 aa24.39■■□□□ 1.49
CTCF-202ENST00000401394 SPTLC2O15270 562 aa24.38■■□□□ 1.49
CTCF-202ENST00000401394 FOXN1O15353 648 aa24.38■■□□□ 1.49
CTCF-202ENST00000401394 SLC3A2P08195 630 aaKnown RBP24.38■■□□□ 1.49
CTCF-202ENST00000401394 PNOCQ13519 176 aa24.38■■□□□ 1.49
CTCF-202ENST00000401394 RABL6Q3YEC7 729 aaPredicted RBP24.38■■□□□ 1.49
CTCF-202ENST00000401394 RAPGEF4Q8WZA2 1011 aa24.38■■□□□ 1.49
CTCF-202ENST00000401394 HPS5Q9UPZ3 1129 aa24.38■■□□□ 1.49
CTCF-202ENST00000401394 A0A1B0GUL7 405 aa24.38■■□□□ 1.49
CTCF-202ENST00000401394 PFKFB1P16118 471 aa24.38■■□□□ 1.49
CTCF-202ENST00000401394 SFPQP23246 707 aaKnown RBP eCLIP24.38■■□□□ 1.49
CTCF-202ENST00000401394 CLCN6P51797 869 aa24.38■■□□□ 1.49
CTCF-202ENST00000401394 ZRSR1Q15695 479 aaKnown RBP24.38■■□□□ 1.49
CTCF-202ENST00000401394 ARHGAP29Q52LW3 1261 aa24.38■■□□□ 1.49
CTCF-202ENST00000401394 NBPF26B4DH59 902 aa24.37■■□□□ 1.49
CTCF-202ENST00000401394 NBPF14Q5TI25 921 aa24.37■■□□□ 1.49
CTCF-202ENST00000401394 NBPF10Q6P3W6 841 aaKnown RBP24.37■■□□□ 1.49
CTCF-202ENST00000401394 NBPF15Q8N660 670 aa24.37■■□□□ 1.49
CTCF-202ENST00000401394 PUS7LQ9H0K6 701 aaKnown RBP24.37■■□□□ 1.49
CTCF-202ENST00000401394 A1BGP04217 495 aa24.37■■□□□ 1.49
CTCF-202ENST00000401394 PHKBQ93100 1093 aa24.37■■□□□ 1.49
CTCF-202ENST00000401394 RTEL1Q9NZ71 1219 aa24.37■■□□□ 1.49
CTCF-202ENST00000401394 PHKG2P15735 406 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 TTC5Q8N0Z6 440 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 MYL10Q9BUA6 226 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 NCAPD2Q15021 1401 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 SH3TC1Q8TE82 1336 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 CAVIN2O95810 425 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 FGAP02671 866 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 ANTXR2P58335 489 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 MYSM1Q5VVJ2 828 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 KLHL34Q8N239 644 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 UTP14AQ9BVJ6 771 aaKnown RBP24.36■■□□□ 1.49
CTCF-202ENST00000401394 CYP27B1O15528 508 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 PRC1O43663 620 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 FANCCQ00597 558 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 AGXT2Q9BYV1 514 aa24.36■■□□□ 1.49
CTCF-202ENST00000401394 OSBPL5Q9H0X9 879 aaPredicted RBP24.35■■□□□ 1.49
CTCF-202ENST00000401394 POLR3GO15318 223 aaPredicted RBP24.35■■□□□ 1.49
CTCF-202ENST00000401394 CSB-PGBD3P0DP91 1061 aa24.35■■□□□ 1.49
CTCF-202ENST00000401394 AXDND1Q5T1B0 1012 aaPredicted RBP24.35■■□□□ 1.49
CTCF-202ENST00000401394 ZCCHC17Q9NP64 241 aaKnown RBP24.35■■□□□ 1.49
CTCF-202ENST00000401394 LAMA4Q16363 1823 aa24.35■■□□□ 1.49
CTCF-202ENST00000401394 LMO7Q8WWI1 1683 aa24.34■■□□□ 1.49
CTCF-202ENST00000401394 RNF113AO15541 343 aaKnown RBP24.34■■□□□ 1.49
CTCF-202ENST00000401394 NEMFO60524 1076 aa24.34■■□□□ 1.49
CTCF-202ENST00000401394 SYNE4Q8N205 404 aa24.34■■□□□ 1.49
CTCF-202ENST00000401394 NAT10Q9H0A0 1025 aaKnown RBP24.34■■□□□ 1.49
CTCF-202ENST00000401394 CDC27P30260 824 aa24.34■■□□□ 1.49
CTCF-202ENST00000401394 DSCC1Q9BVC3 393 aa24.34■■□□□ 1.49
CTCF-202ENST00000401394 SNRPA1P09661 255 aaKnown RBP24.33■■□□□ 1.49
CTCF-202ENST00000401394 FBXO18Q8NFZ0 1043 aa24.33■■□□□ 1.49
CTCF-202ENST00000401394 FHOD1Q9Y613 1164 aa24.33■■□□□ 1.49
CTCF-202ENST00000401394 HMGB1P09429 215 aaKnown RBP24.33■■□□□ 1.49
CTCF-202ENST00000401394 C5P01031 1676 aa24.33■■□□□ 1.48
CTCF-202ENST00000401394 URI1O94763 535 aaPredicted RBP24.32■■□□□ 1.48
CTCF-202ENST00000401394 FOXP4Q8IVH2 680 aaPredicted RBP24.32■■□□□ 1.48
CTCF-202ENST00000401394 ZNF274Q96GC6 653 aaPredicted RBP24.32■■□□□ 1.48
CTCF-202ENST00000401394 HELLSQ9NRZ9 838 aa24.32■■□□□ 1.48
CTCF-202ENST00000401394 CPLX1O14810 134 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms