RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 NPHP4O75161 1426 aaPredicted RBP21.38■■□□□ 1.01
USP48-204ENST00000400301 ADCY9O60503 1353 aa21.38■■□□□ 1.01
USP48-204ENST00000400301 HSP90AA4PQ58FG1 418 aa21.38■■□□□ 1.01
USP48-204ENST00000400301 MIGA1Q8NAN2 632 aa21.38■■□□□ 1.01
USP48-204ENST00000400301 NRKQ7Z2Y5 1582 aa21.38■■□□□ 1.01
USP48-204ENST00000400301 URI1O94763 535 aaPredicted RBP21.38■■□□□ 1.01
USP48-204ENST00000400301 PTPRUQ92729 1446 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 NR1I2O75469 434 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 USP5P45974 858 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 SNW1Q13573 536 aaKnown RBP21.37■■□□□ 1.01
USP48-204ENST00000400301 STIM1Q13586 685 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 MEX3CQ5U5Q3 659 aaKnown RBP21.37■■□□□ 1.01
USP48-204ENST00000400301 PRDM10Q9NQV6 1147 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 ERBB4Q15303 1308 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 TMEM94Q12767 1356 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 UBASH3AP57075 661 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 DZIP1Q86YF9 867 aaKnown RBP21.37■■□□□ 1.01
USP48-204ENST00000400301 PAXBP1Q9Y5B6 917 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 SHPRHQ149N8 1683 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 ZSCAN12O43309 604 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 PIP4K2BP78356 416 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 UTP14AQ9BVJ6 771 aaKnown RBP21.37■■□□□ 1.01
USP48-204ENST00000400301 MKNK2Q9HBH9 465 aa21.37■■□□□ 1.01
USP48-204ENST00000400301 MBD4O95243 580 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 PPP4R3BQ5MIZ7 849 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 CCDC150Q8NCX0 1101 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 CDK5RAP3Q96JB5 506 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 PUS3Q9BZE2 481 aaKnown RBP21.36■■□□□ 1.01
USP48-204ENST00000400301 TMTC2Q8N394 836 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 ANGEL1Q9UNK9 670 aaKnown RBP21.36■■□□□ 1.01
USP48-204ENST00000400301 ZPR1O75312 459 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 NLRP5P59047 1200 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 SOGA3Q5TF21 947 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 ESR2Q92731 530 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 PFKFB2O60825 505 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 TTC14Q96N46 770 aa21.36■■□□□ 1.01
USP48-204ENST00000400301 ZNF75DP51815 510 aa21.35■■□□□ 1.01
USP48-204ENST00000400301 USP28Q96RU2 1077 aa21.35■■□□□ 1.01
USP48-204ENST00000400301 NCOA3Q9Y6Q9 1424 aa21.35■■□□□ 1.01
USP48-204ENST00000400301 ATP2B2Q01814 1243 aa21.34■■□□□ 1.01
USP48-204ENST00000400301 CPLX3Q8WVH0 158 aa21.34■■□□□ 1.01
USP48-204ENST00000400301 IFNKQ9P0W0 207 aa21.34■■□□□ 1.01
USP48-204ENST00000400301 SCRN1Q12765 414 aa21.34■■□□□ 1.01
USP48-204ENST00000400301 ANKRD18AQ8IVF6 992 aa21.34■■□□□ 1.01
USP48-204ENST00000400301 ZKSCAN3Q9BRR0 538 aa21.34■■□□□ 1.01
USP48-204ENST00000400301 ERCC4Q92889 916 aaPredicted RBP21.34■■□□□ 1.01
USP48-204ENST00000400301 ANO1Q5XXA6 986 aa21.33■■□□□ 1.01
USP48-204ENST00000400301 SLC4A8Q2Y0W8 1093 aa21.33■■□□□ 1.01
USP48-204ENST00000400301 NOC3LQ8WTT2 800 aaKnown RBP21.33■■□□□ 1.01
USP48-204ENST00000400301 SPATA31D1Q6ZQQ2 1576 aa21.33■■□□□ 1.01
USP48-204ENST00000400301 CYP27B1O15528 508 aa21.33■■□□□ 1
USP48-204ENST00000400301 NAP1L1P55209 391 aaKnown RBP21.33■■□□□ 1
USP48-204ENST00000400301 IL25Q9H293 177 aa21.33■■□□□ 1
USP48-204ENST00000400301 ANKIB1Q9P2G1 1089 aa21.33■■□□□ 1
USP48-204ENST00000400301 NCAPD2Q15021 1401 aa21.33■■□□□ 1
USP48-204ENST00000400301 REREQ9P2R6 1566 aa21.33■■□□□ 1
USP48-204ENST00000400301 DDB1Q16531 1140 aa21.33■■□□□ 1
USP48-204ENST00000400301 TSPY2A6NKD2 308 aa21.32■■□□□ 1
USP48-204ENST00000400301 PDE8AO60658 829 aa21.32■■□□□ 1
USP48-204ENST00000400301 ZNF274Q96GC6 653 aaPredicted RBP21.32■■□□□ 1
USP48-204ENST00000400301 ARHGAP29Q52LW3 1261 aa21.32■■□□□ 1
USP48-204ENST00000400301 ZNHIT6Q9NWK9 470 aaKnown RBP21.32■■□□□ 1
USP48-204ENST00000400301 SH3TC1Q8TE82 1336 aa21.32■■□□□ 1
USP48-204ENST00000400301 TERF1P54274 439 aa21.32■■□□□ 1
USP48-204ENST00000400301 PUM3Q15397 648 aaKnown RBP21.32■■□□□ 1
USP48-204ENST00000400301 SPDYE4A6NLX3 237 aa21.31■■□□□ 1
USP48-204ENST00000400301 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.31■■□□□ 1
USP48-204ENST00000400301 ZMYM1Q5SVZ6 1142 aa21.31■■□□□ 1
USP48-204ENST00000400301 SLAIN2Q9P270 581 aa21.31■■□□□ 1
USP48-204ENST00000400301 FGAP02671 866 aa21.31■■□□□ 1
USP48-204ENST00000400301 IFIT1BQ5T764 474 aaKnown RBP21.31■■□□□ 1
USP48-204ENST00000400301 KANK3Q6NY19 840 aa21.31■■□□□ 1
USP48-204ENST00000400301 CAGE1Q8TC20 777 aa21.31■■□□□ 1
USP48-204ENST00000400301 CGNQ9P2M7 1197 aaKnown RBP21.31■■□□□ 1
USP48-204ENST00000400301 ADGRL3Q9HAR2 1447 aa21.31■■□□□ 1
USP48-204ENST00000400301 GNAT2P19087 354 aa21.31■■□□□ 1
USP48-204ENST00000400301 ADORA1P30542 326 aa21.31■■□□□ 1
USP48-204ENST00000400301 HSP90B2PQ58FF3 399 aa21.31■■□□□ 1
USP48-204ENST00000400301 PHKBQ93100 1093 aa21.31■■□□□ 1
USP48-204ENST00000400301 TMEM87BQ96K49 555 aa21.31■■□□□ 1
USP48-204ENST00000400301 MYL10Q9BUA6 226 aa21.31■■□□□ 1
USP48-204ENST00000400301 ARMT1Q9H993 441 aa21.31■■□□□ 1
USP48-204ENST00000400301 ZNF532Q9HCE3 1301 aa21.3■■□□□ 1
USP48-204ENST00000400301 AFMP43652 599 aa21.3■■□□□ 1
USP48-204ENST00000400301 TMX1Q9H3N1 280 aa21.3■■□□□ 1
USP48-204ENST00000400301 KIF20BQ96Q89 1820 aa21.3■■□□□ 1
USP48-204ENST00000400301 TMEM87AQ8NBN3 555 aa21.3■■□□□ 1
USP48-204ENST00000400301 ELP1O95163 1332 aa21.3■■□□□ 1
USP48-204ENST00000400301 ZNF444Q8N0Y2 327 aaPredicted RBP21.29■■□□□ 1
USP48-204ENST00000400301 GPR108Q9NPR9 543 aa21.29■■□□□ 1
USP48-204ENST00000400301 CCDC194A0A1B0GVG4 234 aa21.29■■□□□ 1
USP48-204ENST00000400301 PDIA3P30101 505 aaKnown RBP21.29■■□□□ 1
USP48-204ENST00000400301 IKQ13123 557 aaPredicted RBP21.29■■□□□ 1
USP48-204ENST00000400301 MAGEB6P1A0A0J9YX57 407 aa21.29■■□□□ 1
USP48-204ENST00000400301 SAMD1Q6SPF0 538 aaPredicted RBP21.29■■□□□ 1
USP48-204ENST00000400301 PRKCSHP14314 528 aaPredicted RBP21.28■■□□□ 1
USP48-204ENST00000400301 LPIN2Q92539 896 aa21.28■■□□□ 1
USP48-204ENST00000400301 MAST3O60307 1309 aa21.28■■□□□ 1
USP48-204ENST00000400301 PCCAP05165 728 aaPredicted RBP21.28■■□□□ 1
USP48-204ENST00000400301 PDE4BQ07343 736 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms