RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 SLC9C2Q5TAH2 1124 aa16.48■□□□□ 0.23
SNCA-204ENST00000394989 LPIN2Q92539 896 aa16.48■□□□□ 0.23
SNCA-204ENST00000394989 ANP32BQ92688 251 aaKnown RBP16.48■□□□□ 0.23
SNCA-204ENST00000394989 PDLIM2Q96JY6 352 aa16.48■□□□□ 0.23
SNCA-204ENST00000394989 TSPY26PQ9H489 355 aa16.48■□□□□ 0.23
SNCA-204ENST00000394989 GPHNQ9NQX3 736 aaPredicted RBP16.48■□□□□ 0.23
SNCA-204ENST00000394989 PRDM10Q9NQV6 1147 aa16.48■□□□□ 0.23
SNCA-204ENST00000394989 BCORQ6W2J9 1755 aa16.48■□□□□ 0.23
SNCA-204ENST00000394989 KRT85P78386 507 aa16.47■□□□□ 0.23
SNCA-204ENST00000394989 FBXL16Q8N461 479 aa16.47■□□□□ 0.23
SNCA-204ENST00000394989 NCOA5Q9HCD5 579 aaKnown RBP16.47■□□□□ 0.23
SNCA-204ENST00000394989 PHF14O94880 888 aa16.47■□□□□ 0.23
SNCA-204ENST00000394989 PDIA3P30101 505 aaKnown RBP16.47■□□□□ 0.23
SNCA-204ENST00000394989 CSPP1Q1MSJ5 1256 aa16.47■□□□□ 0.23
SNCA-204ENST00000394989 LLPHQ9BRT6 129 aaKnown RBP16.47■□□□□ 0.23
SNCA-204ENST00000394989 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.47■□□□□ 0.23
SNCA-204ENST00000394989 CTNNA3Q9UI47 895 aa16.47■□□□□ 0.23
SNCA-204ENST00000394989 NIP7Q9Y221 180 aaKnown RBP eCLIP16.47■□□□□ 0.23
SNCA-204ENST00000394989 SALL1Q9NSC2 1324 aa16.47■□□□□ 0.23
SNCA-204ENST00000394989 CCT2P78371 535 aaKnown RBP16.46■□□□□ 0.23
SNCA-204ENST00000394989 IMMTQ16891 758 aaKnown RBP16.46■□□□□ 0.23
SNCA-204ENST00000394989 FAM98CQ17RN3 349 aaKnown RBP16.46■□□□□ 0.23
SNCA-204ENST00000394989 PARP10Q53GL7 1025 aa16.46■□□□□ 0.23
SNCA-204ENST00000394989 MPNDQ8N594 471 aa16.46■□□□□ 0.23
SNCA-204ENST00000394989 NBPF3Q9H094 633 aa16.46■□□□□ 0.23
SNCA-204ENST00000394989 ELP1O95163 1332 aa16.46■□□□□ 0.23
SNCA-204ENST00000394989 TCRBV5S4A2TA0A5A2 114 aa16.46■□□□□ 0.23
SNCA-204ENST00000394989 RESTQ13127 1097 aa16.46■□□□□ 0.23
SNCA-204ENST00000394989 TTF1Q15361 905 aaPredicted RBP16.46■□□□□ 0.23
SNCA-204ENST00000394989 WWC3Q9ULE0 1092 aa16.46■□□□□ 0.23
SNCA-204ENST00000394989 IDH1O75874 414 aaKnown RBP16.46■□□□□ 0.22
SNCA-204ENST00000394989 EVCP57679 992 aa16.46■□□□□ 0.22
SNCA-204ENST00000394989 MB21D2Q8IYB1 491 aaPredicted RBP16.46■□□□□ 0.22
SNCA-204ENST00000394989 ZNF831Q5JPB2 1677 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 BCL9LQ86UU0 1499 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 PTPDC1A2A3K4 754 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 NKX2-3Q8TAU0 364 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 ZNF274Q96GC6 653 aaPredicted RBP16.45■□□□□ 0.22
SNCA-204ENST00000394989 PDCL3Q9H2J4 239 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 TFIP11Q9UBB9 837 aaKnown RBP16.45■□□□□ 0.22
SNCA-204ENST00000394989 DOCK2Q92608 1830 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 ZNF532Q9HCE3 1301 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 KCNQ4P56696 695 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 UBE3CQ15386 1083 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 PTF1AQ7RTS3 328 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 LINC00116Q8NCU8 138 aa16.45■□□□□ 0.22
SNCA-204ENST00000394989 PPFIA3O75145 1194 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 PDE6AP16499 860 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 ANTXR2P58335 489 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 RASGRF1Q13972 1273 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 MPHOSPH8Q99549 860 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 DENND2AQ9ULE3 1009 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 UQCRFS1P1P0C7P4 283 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 ZSCAN25Q6NSZ9 544 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 RTL9Q8NET4 1388 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 SPATA5Q8NB90 893 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 FUCA2Q9BTY2 467 aa16.44■□□□□ 0.22
SNCA-204ENST00000394989 CCDC152Q4G0S7 254 aa16.43■□□□□ 0.22
SNCA-204ENST00000394989 LEO1Q8WVC0 666 aaPredicted RBP16.43■□□□□ 0.22
SNCA-204ENST00000394989 SMARCC1Q92922 1105 aaPredicted RBP16.43■□□□□ 0.22
SNCA-204ENST00000394989 CASZ1Q86V15 1759 aa16.43■□□□□ 0.22
SNCA-204ENST00000394989 MYH15Q9Y2K3 1946 aa16.43■□□□□ 0.22
SNCA-204ENST00000394989 ZNF213O14771 459 aa16.43■□□□□ 0.22
SNCA-204ENST00000394989 GIMAP6Q6P9H5 292 aa16.43■□□□□ 0.22
SNCA-204ENST00000394989 FAM184AQ8NB25 1140 aa16.43■□□□□ 0.22
SNCA-204ENST00000394989 PRC1O43663 620 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 TOM1O60784 492 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 TPM2P07951 284 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 SLC5A1P13866 664 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 SMIM5Q71RC9 77 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 SCAND2PQ9GZW5 306 aaPredicted RBP16.42■□□□□ 0.22
SNCA-204ENST00000394989 H3BQV1 296 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 LIG1P18858 919 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 IFFO2Q5TF58 517 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 NAP1L2Q9ULW6 460 aaPredicted RBP16.42■□□□□ 0.22
SNCA-204ENST00000394989 LETM1O95202 739 aaPredicted RBP16.42■□□□□ 0.22
SNCA-204ENST00000394989 FDPSP14324 419 aaKnown RBP16.42■□□□□ 0.22
SNCA-204ENST00000394989 HMGN5P82970 282 aaKnown RBP16.42■□□□□ 0.22
SNCA-204ENST00000394989 C3orf67Q6ZVT6 689 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 TBC1D10CQ8IV04 446 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 SPATA32Q96LK8 384 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 HPS5Q9UPZ3 1129 aa16.42■□□□□ 0.22
SNCA-204ENST00000394989 TAF1P21675 1872 aa16.41■□□□□ 0.22
SNCA-204ENST00000394989 MCM5P33992 734 aa16.41■□□□□ 0.22
SNCA-204ENST00000394989 ADD1P35611 737 aaKnown RBP16.41■□□□□ 0.22
SNCA-204ENST00000394989 NCOA7Q8NI08 942 aa16.41■□□□□ 0.22
SNCA-204ENST00000394989 C8orf37Q96NL8 207 aa16.41■□□□□ 0.22
SNCA-204ENST00000394989 BCAMP50895 628 aa16.41■□□□□ 0.22
SNCA-204ENST00000394989 FOSBP53539 338 aa16.41■□□□□ 0.22
SNCA-204ENST00000394989 NAA16Q6N069 864 aaPredicted RBP16.41■□□□□ 0.22
SNCA-204ENST00000394989 A0A1B0GUL6 1792 aa16.4■□□□□ 0.22
SNCA-204ENST00000394989 CHRNDQ07001 517 aa16.4■□□□□ 0.22
SNCA-204ENST00000394989 PGBD1Q96JS3 809 aa16.4■□□□□ 0.22
SNCA-204ENST00000394989 STRBPQ96SI9 672 aaKnown RBP16.4■□□□□ 0.22
SNCA-204ENST00000394989 ZSCAN16Q9H4T2 348 aaPredicted RBP16.4■□□□□ 0.22
SNCA-204ENST00000394989 CARMIL3Q8ND23 1372 aa16.4■□□□□ 0.22
SNCA-204ENST00000394989 IGHMBP2P38935 993 aaKnown RBP16.4■□□□□ 0.22
SNCA-204ENST00000394989 VPS72Q15906 364 aa16.4■□□□□ 0.22
SNCA-204ENST00000394989 CLEC4GQ6UXB4 293 aa16.4■□□□□ 0.22
SNCA-204ENST00000394989 ZHX1Q9UKY1 873 aaPredicted RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms