RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MUC3BQ9H195 1237 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 MTMR7Q9Y216 660 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 H3BRJ5 948 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 ARHGAP4P98171 946 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 DUOXA2Q1HG44 320 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 PRR23CQ6ZRP0 262 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 MAP4K3Q8IVH8 894 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 GLYCTKQ8IVS8 523 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 NXPE3Q969Y0 559 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 SRA1Q9HD15 236 aaKnown RBP4.44□□□□□ -1.7
VPS13A-206ENST00000376646 SEC31BQ9NQW1 1179 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 FAM117BQ6P1L5 589 aa4.43□□□□□ -1.7
VPS13A-206ENST00000376646 VN1R5Q7Z5H4 357 aa4.43□□□□□ -1.7
VPS13A-206ENST00000376646 SOX13Q9UN79 622 aa4.43□□□□□ -1.7
VPS13A-206ENST00000376646 ORC1Q13415 861 aa4.43□□□□□ -1.7
VPS13A-206ENST00000376646 Q6ZS46 218 aa4.43□□□□□ -1.7
VPS13A-206ENST00000376646 CACTIN-AS1Q8N1I8 211 aa4.43□□□□□ -1.7
VPS13A-206ENST00000376646 ARMC10Q8N2F6 343 aa4.43□□□□□ -1.7
VPS13A-206ENST00000376646 TMEM102Q8N9M5 508 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-206ENST00000376646 ZFYVE28Q9HCC9 887 aa4.43□□□□□ -1.7
VPS13A-206ENST00000376646 FAM177BA6PVY3 158 aa4.42□□□□□ -1.7
VPS13A-206ENST00000376646 SOX1O00570 391 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-206ENST00000376646 USP5P45974 858 aa4.42□□□□□ -1.7
VPS13A-206ENST00000376646 CABP4P57796 275 aa4.42□□□□□ -1.7
VPS13A-206ENST00000376646 KLHL23Q8NBE8 558 aa4.42□□□□□ -1.7
VPS13A-206ENST00000376646 AMOTL2Q9Y2J4 779 aa4.42□□□□□ -1.7
VPS13A-206ENST00000376646 EDN3P14138 238 aa4.42□□□□□ -1.7
VPS13A-206ENST00000376646 EHHADHQ08426 723 aa4.42□□□□□ -1.7
VPS13A-206ENST00000376646 PMEPA1Q969W9 287 aa4.42□□□□□ -1.7
VPS13A-206ENST00000376646 BRPF3Q9ULD4 1205 aa4.42□□□□□ -1.7
VPS13A-206ENST00000376646 COL17A1Q9UMD9 1497 aaPredicted RBP4.41□□□□□ -1.7
VPS13A-206ENST00000376646 DLGAP3O95886 979 aa4.41□□□□□ -1.7
VPS13A-206ENST00000376646 PIP4K2BP78356 416 aa4.41□□□□□ -1.7
VPS13A-206ENST00000376646 IKBKEQ14164 716 aa4.41□□□□□ -1.7
VPS13A-206ENST00000376646 SPRED3Q2MJR0 410 aa4.41□□□□□ -1.7
VPS13A-206ENST00000376646 TXNDC2Q86VQ3 553 aa4.41□□□□□ -1.7
VPS13A-206ENST00000376646 BSNDQ8WZ55 320 aa4.41□□□□□ -1.7
VPS13A-206ENST00000376646 EGFL7Q9UHF1 273 aa4.41□□□□□ -1.7
VPS13A-206ENST00000376646 FSTP19883 344 aa4.41□□□□□ -1.7
VPS13A-206ENST00000376646 USP26Q9BXU7 913 aa4.41□□□□□ -1.7
VPS13A-206ENST00000376646 A0A1W2PP55 124 aa4.4□□□□□ -1.71
VPS13A-206ENST00000376646 GRIA4P48058 902 aa4.4□□□□□ -1.71
VPS13A-206ENST00000376646 PREPP48147 710 aa4.4□□□□□ -1.71
VPS13A-206ENST00000376646 C19orf57Q0VDD7 668 aa4.4□□□□□ -1.71
VPS13A-206ENST00000376646 UTP4Q969X6 686 aaKnown RBP4.4□□□□□ -1.71
VPS13A-206ENST00000376646 BHLHE41Q9C0J9 482 aaPredicted RBP4.4□□□□□ -1.71
VPS13A-206ENST00000376646 HMX2A2RU54 273 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 GPR182O15218 404 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 ESRRAP11474 423 aaPredicted RBP4.39□□□□□ -1.71
VPS13A-206ENST00000376646 B4GALNT3Q6L9W6 998 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 FAM46AQ96IP4 442 aaKnown RBP4.39□□□□□ -1.71
VPS13A-206ENST00000376646 RUSC1Q9BVN2 902 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 GSTM4Q03013 218 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 TRIM42Q8IWZ5 723 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 TMC1Q8TDI8 760 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 DCAF11Q8TEB1 546 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 TCF12Q99081 682 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 NIF3L1Q9GZT8 377 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 NPHS2Q9NP85 383 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 OSGEPQ9NPF4 335 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 STOML1Q9UBI4 398 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 RAXQ9Y2V3 346 aa4.39□□□□□ -1.71
VPS13A-206ENST00000376646 LOC100289279A0A1B0GTE1 492 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 NDUFB5O43674 189 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 HYAL3O43820 417 aaPredicted RBP4.38□□□□□ -1.71
VPS13A-206ENST00000376646 IGHA2P01877 340 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 DRD2P14416 443 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 ZNF423Q2M1K9 1284 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 GALNT12Q8IXK2 581 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 WNT8BQ93098 351 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 CEP41Q9BYV8 373 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 C7orf69Q9H7B7 122 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 LIN7BQ9HAP6 207 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 A0A096LPE4 126 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 A0A1W2PPZ6 126 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 DHX15O43143 795 aaKnown RBP4.38□□□□□ -1.71
VPS13A-206ENST00000376646 ECEL1O95672 775 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 CTSBP07858 339 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 BMP3P12645 472 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 SSTR4P31391 388 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 CCNJLQ8IV13 435 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 MYRFLQ96LU7 910 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 FAM129BQ96TA1 746 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 RNF208Q9H0X6 261 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 KCNF1Q9H3M0 494 aa4.38□□□□□ -1.71
VPS13A-206ENST00000376646 MED26O95402 600 aa4.37□□□□□ -1.71
VPS13A-206ENST00000376646 TGFB1P01137 390 aa4.37□□□□□ -1.71
VPS13A-206ENST00000376646 ARL4DP49703 201 aa4.37□□□□□ -1.71
VPS13A-206ENST00000376646 LRP8Q14114 963 aa4.37□□□□□ -1.71
VPS13A-206ENST00000376646 FDX2Q6P4F2 183 aa4.37□□□□□ -1.71
VPS13A-206ENST00000376646 EIF1AYO14602 144 aaKnown RBP4.37□□□□□ -1.71
VPS13A-206ENST00000376646 SART1O43290 800 aaKnown RBP4.37□□□□□ -1.71
VPS13A-206ENST00000376646 PCDH1Q08174 1060 aa4.37□□□□□ -1.71
VPS13A-206ENST00000376646 SGO2Q562F6 1265 aa4.37□□□□□ -1.71
VPS13A-206ENST00000376646 PI16Q6UXB8 463 aa4.37□□□□□ -1.71
VPS13A-206ENST00000376646 FAM20CQ8IXL6 584 aa4.37□□□□□ -1.71
VPS13A-206ENST00000376646 C12orf50Q8NA57 414 aaPredicted RBP4.37□□□□□ -1.71
VPS13A-206ENST00000376646 SOWAHDA6NJG2 315 aa4.36□□□□□ -1.71
VPS13A-206ENST00000376646 ZNF157P51786 506 aaPredicted RBP4.36□□□□□ -1.71
VPS13A-206ENST00000376646 BEND4Q6ZU67 534 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms