RNA–Protein interactions for RNA: ENST00000376061.8

PDPN-203, Transcript of podoplanin, humanhuman

TSL 1 (best) BASIC

Gene PDPN, Length 1,368 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-203ENST00000376061 ATP2B4P23634 1241 aa12.68□□□□□ -0.38
PDPN-203ENST00000376061 FKBP4Q02790 459 aaKnown RBP eCLIP12.68□□□□□ -0.38
PDPN-203ENST00000376061 CAVIN4Q5BKX8 364 aa12.68□□□□□ -0.38
PDPN-203ENST00000376061 OLFM4Q6UX06 510 aa12.68□□□□□ -0.38
PDPN-203ENST00000376061 C15orf52Q6ZUT6 534 aaKnown RBP12.68□□□□□ -0.38
PDPN-203ENST00000376061 FBXO33Q7Z6M2 555 aa12.68□□□□□ -0.38
PDPN-203ENST00000376061 TXNRD3Q86VQ6 643 aa12.68□□□□□ -0.38
PDPN-203ENST00000376061 FAM84BQ96KN1 310 aaPredicted RBP12.68□□□□□ -0.38
PDPN-203ENST00000376061 GPR101Q96P66 508 aaPredicted RBP12.68□□□□□ -0.38
PDPN-203ENST00000376061 ANTXR1Q9H6X2 564 aa12.68□□□□□ -0.38
PDPN-203ENST00000376061 PLSCR2Q9NRY7 297 aa12.68□□□□□ -0.38
PDPN-203ENST00000376061 DIAPH3Q9NSV4 1193 aa12.68□□□□□ -0.38
PDPN-203ENST00000376061 GGA1Q9UJY5 639 aa12.68□□□□□ -0.38
PDPN-203ENST00000376061 MED23Q9ULK4 1368 aa12.67□□□□□ -0.38
PDPN-203ENST00000376061 DPEP1P16444 411 aa12.67□□□□□ -0.38
PDPN-203ENST00000376061 SPATA5Q8NB90 893 aa12.67□□□□□ -0.38
PDPN-203ENST00000376061 TBC1D16Q8TBP0 767 aa12.67□□□□□ -0.38
PDPN-203ENST00000376061 IL25Q9H293 177 aa12.67□□□□□ -0.38
PDPN-203ENST00000376061 RBM19Q9Y4C8 960 aaKnown RBP12.67□□□□□ -0.38
PDPN-203ENST00000376061 ZNF646O15015 1829 aaPredicted RBP12.66□□□□□ -0.38
PDPN-203ENST00000376061 CHD4Q14839 1912 aa12.66□□□□□ -0.38
PDPN-203ENST00000376061 HIP1O00291 1037 aa12.66□□□□□ -0.38
PDPN-203ENST00000376061 CYP2E1P05181 493 aaPredicted RBP12.66□□□□□ -0.38
PDPN-203ENST00000376061 KCNA3P22001 575 aa12.66□□□□□ -0.38
PDPN-203ENST00000376061 HIBADHP31937 336 aaKnown RBP12.66□□□□□ -0.38
PDPN-203ENST00000376061 NMIQ13287 307 aaPredicted RBP12.66□□□□□ -0.38
PDPN-203ENST00000376061 VPS37DQ86XT2 251 aa12.66□□□□□ -0.38
PDPN-203ENST00000376061 UPF2Q9HAU5 1272 aaKnown RBP12.66□□□□□ -0.38
PDPN-203ENST00000376061 PIH1D3Q9NQM4 214 aaKnown RBP12.66□□□□□ -0.38
PDPN-203ENST00000376061 GNL3LQ9NVN8 582 aaKnown RBP12.66□□□□□ -0.38
PDPN-203ENST00000376061 POLLQ9UGP5 575 aa12.66□□□□□ -0.38
PDPN-203ENST00000376061 IQSEC3Q9UPP2 1182 aaPredicted RBP12.66□□□□□ -0.38
PDPN-203ENST00000376061 CCDC88AQ3V6T2 1871 aa12.66□□□□□ -0.38
PDPN-203ENST00000376061 PDS5AQ29RF7 1337 aaKnown RBP12.65□□□□□ -0.38
PDPN-203ENST00000376061 RAD50Q92878 1312 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 A0A0D9SFI3 127 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 A0A0G2JLW4 131 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 SEMA3EO15041 775 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 SGSM2O43147 1006 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 EIF5BO60841 1220 aaKnown RBP12.65□□□□□ -0.38
PDPN-203ENST00000376061 CHGBP05060 677 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 CWC27Q6UX04 472 aaKnown RBP12.65□□□□□ -0.38
PDPN-203ENST00000376061 DPP8Q6V1X1 898 aaPredicted RBP12.65□□□□□ -0.38
PDPN-203ENST00000376061 TICAM2Q86XR7 235 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 C7orf43Q8WVR3 580 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 FAM227BQ96M60 508 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 TBC1D32Q96NH3 1257 aa12.65□□□□□ -0.38
PDPN-203ENST00000376061 ARFGEF1Q9Y6D6 1849 aa12.65□□□□□ -0.39
PDPN-203ENST00000376061 C6orf229H3BNL8 230 aa12.64□□□□□ -0.39
PDPN-203ENST00000376061 REC8O95072 547 aa12.64□□□□□ -0.39
PDPN-203ENST00000376061 TGFB2P61812 414 aa12.64□□□□□ -0.39
PDPN-203ENST00000376061 TTF1Q15361 905 aaPredicted RBP12.64□□□□□ -0.39
PDPN-203ENST00000376061 ZNF804AQ7Z570 1209 aa12.64□□□□□ -0.39
PDPN-203ENST00000376061 MPNDQ8N594 471 aa12.64□□□□□ -0.39
PDPN-203ENST00000376061 TTLL6Q8N841 843 aa12.64□□□□□ -0.39
PDPN-203ENST00000376061 RUFY2Q8WXA3 655 aa12.64□□□□□ -0.39
PDPN-203ENST00000376061 TMX4Q9H1E5 349 aaPredicted RBP12.64□□□□□ -0.39
PDPN-203ENST00000376061 FER1L6Q2WGJ9 1857 aa12.64□□□□□ -0.39
PDPN-203ENST00000376061 CD44P16070 742 aaKnown RBP12.63□□□□□ -0.39
PDPN-203ENST00000376061 DENND2AQ9ULE3 1009 aa12.63□□□□□ -0.39
PDPN-203ENST00000376061 CD2APQ9Y5K6 639 aa12.63□□□□□ -0.39
PDPN-203ENST00000376061 RNF113AO15541 343 aaKnown RBP12.62□□□□□ -0.39
PDPN-203ENST00000376061 ZFYP08048 801 aaPredicted RBP12.62□□□□□ -0.39
PDPN-203ENST00000376061 LRRFIP1Q32MZ4 808 aaKnown RBP12.62□□□□□ -0.39
PDPN-203ENST00000376061 SLFNL1Q499Z3 407 aa12.62□□□□□ -0.39
PDPN-203ENST00000376061 ZMYM1Q5SVZ6 1142 aa12.62□□□□□ -0.39
PDPN-203ENST00000376061 CC2D2BQ6DHV5 1058 aa12.62□□□□□ -0.39
PDPN-203ENST00000376061 TDRD7Q8NHU6 1098 aaKnown RBP12.62□□□□□ -0.39
PDPN-203ENST00000376061 C22orf23Q9BZE7 217 aa12.62□□□□□ -0.39
PDPN-203ENST00000376061 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.62□□□□□ -0.39
PDPN-203ENST00000376061 SPON1Q9HCB6 807 aa12.62□□□□□ -0.39
PDPN-203ENST00000376061 ANO2Q9NQ90 1003 aa12.62□□□□□ -0.39
PDPN-203ENST00000376061 PSME4Q14997 1843 aa12.62□□□□□ -0.39
PDPN-203ENST00000376061 SCN9AQ15858 1988 aa12.62□□□□□ -0.39
PDPN-203ENST00000376061 C21orf2O43822 256 aa12.61□□□□□ -0.39
PDPN-203ENST00000376061 IDH1O75874 414 aaKnown RBP12.61□□□□□ -0.39
PDPN-203ENST00000376061 ZNF589Q86UQ0 364 aaPredicted RBP12.61□□□□□ -0.39
PDPN-203ENST00000376061 KLHL34Q8N239 644 aa12.61□□□□□ -0.39
PDPN-203ENST00000376061 USP26Q9BXU7 913 aa12.61□□□□□ -0.39
PDPN-203ENST00000376061 RTFDC1Q9BY42 306 aaPredicted RBP12.61□□□□□ -0.39
PDPN-203ENST00000376061 CD209Q9NNX6 404 aa12.61□□□□□ -0.39
PDPN-203ENST00000376061 PPP1R1BQ9UD71 204 aaPredicted RBP12.61□□□□□ -0.39
PDPN-203ENST00000376061 WWC3Q9ULE0 1092 aa12.61□□□□□ -0.39
PDPN-203ENST00000376061 MAST3O60307 1309 aa12.61□□□□□ -0.39
PDPN-203ENST00000376061 RIMBP2O15034 1052 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 FRAT2O75474 233 aaPredicted RBP12.6□□□□□ -0.39
PDPN-203ENST00000376061 IL1R1P14778 569 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 PDE6AP16499 860 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 ADD2P35612 726 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 RBM25P49756 843 aaKnown RBP12.6□□□□□ -0.39
PDPN-203ENST00000376061 CHAF1AQ13111 956 aaPredicted RBP12.6□□□□□ -0.39
PDPN-203ENST00000376061 WASHC4Q2M389 1173 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 CCDC93Q567U6 631 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 ZSCAN25Q6NSZ9 544 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 APPBP2Q92624 585 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 SEC62Q99442 399 aaKnown RBP12.6□□□□□ -0.39
PDPN-203ENST00000376061 EYA3Q99504 573 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 LSG1Q9H089 658 aaKnown RBP12.6□□□□□ -0.39
PDPN-203ENST00000376061 HELLSQ9NRZ9 838 aa12.6□□□□□ -0.39
PDPN-203ENST00000376061 PIM2Q9P1W9 311 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms