RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ADORA1P30542 326 aa17.17■□□□□ 0.34
HMGA1-203ENST00000374116 NEUROD6Q96NK8 337 aa17.17■□□□□ 0.34
HMGA1-203ENST00000374116 FBXO3Q9UK99 471 aa17.17■□□□□ 0.34
HMGA1-203ENST00000374116 IQSEC3Q9UPP2 1182 aaPredicted RBP17.17■□□□□ 0.34
HMGA1-203ENST00000374116 PUM3Q15397 648 aaKnown RBP17.16■□□□□ 0.34
HMGA1-203ENST00000374116 ATP2B3Q16720 1220 aa17.16■□□□□ 0.34
HMGA1-203ENST00000374116 ERC1Q8IUD2 1116 aa17.16■□□□□ 0.34
HMGA1-203ENST00000374116 PANK2Q9BZ23 570 aa17.16■□□□□ 0.34
HMGA1-203ENST00000374116 LTBP3Q9NS15 1303 aa17.16■□□□□ 0.34
HMGA1-203ENST00000374116 A0A1B0GUL7 405 aa17.15■□□□□ 0.34
HMGA1-203ENST00000374116 DDX11L8A8MPP1 907 aa17.15■□□□□ 0.34
HMGA1-203ENST00000374116 FGFR2P21802 821 aa17.15■□□□□ 0.34
HMGA1-203ENST00000374116 TERF1P54274 439 aa17.15■□□□□ 0.34
HMGA1-203ENST00000374116 KIAA2012Q0VF49 1180 aa17.15■□□□□ 0.34
HMGA1-203ENST00000374116 RAB3GAP1Q15042 981 aa17.15■□□□□ 0.34
HMGA1-203ENST00000374116 SUPT20HQ8NEM7 779 aa17.15■□□□□ 0.34
HMGA1-203ENST00000374116 ESYT1Q9BSJ8 1104 aa17.15■□□□□ 0.34
HMGA1-203ENST00000374116 CCDC8Q9H0W5 538 aaPredicted RBP17.15■□□□□ 0.34
HMGA1-203ENST00000374116 TLR7Q9NYK1 1049 aaKnown RBP17.15■□□□□ 0.34
HMGA1-203ENST00000374116 IRS2Q9Y4H2 1338 aa17.15■□□□□ 0.34
HMGA1-203ENST00000374116 TRIM6-TRIM34B2RNG4 842 aa17.14■□□□□ 0.34
HMGA1-203ENST00000374116 ST18O60284 1047 aa17.14■□□□□ 0.34
HMGA1-203ENST00000374116 CHMLP26374 656 aa17.14■□□□□ 0.34
HMGA1-203ENST00000374116 BCAMP50895 628 aa17.14■□□□□ 0.34
HMGA1-203ENST00000374116 UBE4AQ14139 1066 aa17.14■□□□□ 0.34
HMGA1-203ENST00000374116 GRIPAP1Q4V328 841 aa17.14■□□□□ 0.34
HMGA1-203ENST00000374116 EYA3Q99504 573 aa17.14■□□□□ 0.34
HMGA1-203ENST00000374116 JAG2Q9Y219 1238 aa17.14■□□□□ 0.34
HMGA1-203ENST00000374116 G3V3G9 751 aa17.14■□□□□ 0.33
HMGA1-203ENST00000374116 TNNI3KQ59H18 835 aa17.14■□□□□ 0.33
HMGA1-203ENST00000374116 DCAF8Q5TAQ9 597 aa17.14■□□□□ 0.33
HMGA1-203ENST00000374116 EAF2Q96CJ1 260 aaPredicted RBP17.14■□□□□ 0.33
HMGA1-203ENST00000374116 FPGT-TNNI3KV9GXZ4 949 aa17.14■□□□□ 0.33
HMGA1-203ENST00000374116 TTC41PQ6P2S7 1318 aa17.14■□□□□ 0.33
HMGA1-203ENST00000374116 CHD4Q14839 1912 aa17.13■□□□□ 0.33
HMGA1-203ENST00000374116 YDJCA8MPS7 323 aa17.13■□□□□ 0.33
HMGA1-203ENST00000374116 ECE2O60344 883 aa17.13■□□□□ 0.33
HMGA1-203ENST00000374116 JDP2Q8WYK2 163 aa17.13■□□□□ 0.33
HMGA1-203ENST00000374116 LPIN2Q92539 896 aa17.13■□□□□ 0.33
HMGA1-203ENST00000374116 RILPL2Q969X0 211 aa17.13■□□□□ 0.33
HMGA1-203ENST00000374116 FAM84BQ96KN1 310 aaPredicted RBP17.13■□□□□ 0.33
HMGA1-203ENST00000374116 GRPEL1Q9HAV7 217 aa17.13■□□□□ 0.33
HMGA1-203ENST00000374116 AK9Q5TCS8 1911 aa17.13■□□□□ 0.33
HMGA1-203ENST00000374116 EPB41L2O43491 1005 aaKnown RBP17.12■□□□□ 0.33
HMGA1-203ENST00000374116 IFIT1P09914 478 aaKnown RBP17.12■□□□□ 0.33
HMGA1-203ENST00000374116 SLC5A1P13866 664 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 AACSQ86V21 672 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 NIM1KQ8IY84 436 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 TNPO1Q92973 898 aaKnown RBP17.12■□□□□ 0.33
HMGA1-203ENST00000374116 XAGE2Q96GT9 111 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 GBP4Q96PP9 640 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 DBNDD2Q9BQY9 259 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 MED23Q9ULK4 1368 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 ZNF609O15014 1411 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 RAD17O75943 681 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 MCCP23508 829 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 CLASRPQ8N2M8 674 aaKnown RBP17.12■□□□□ 0.33
HMGA1-203ENST00000374116 FBXW7Q969H0 707 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 DICER1Q9UPY3 1922 aaKnown RBP17.12■□□□□ 0.33
HMGA1-203ENST00000374116 SCN9AQ15858 1988 aa17.12■□□□□ 0.33
HMGA1-203ENST00000374116 TIAM2Q8IVF5 1701 aa17.11■□□□□ 0.33
HMGA1-203ENST00000374116 TRAK2O60296 914 aa17.11■□□□□ 0.33
HMGA1-203ENST00000374116 PTMSP20962 102 aa17.11■□□□□ 0.33
HMGA1-203ENST00000374116 PHKA1P46020 1223 aa17.11■□□□□ 0.33
HMGA1-203ENST00000374116 VPS37DQ86XT2 251 aa17.11■□□□□ 0.33
HMGA1-203ENST00000374116 IL17RAQ96F46 866 aa17.11■□□□□ 0.33
HMGA1-203ENST00000374116 AKAP2Q9Y2D5 859 aa17.11■□□□□ 0.33
HMGA1-203ENST00000374116 ZNF541Q9H0D2 1346 aa17.11■□□□□ 0.33
HMGA1-203ENST00000374116 HIBADHP31937 336 aaKnown RBP17.1■□□□□ 0.33
HMGA1-203ENST00000374116 MXD3Q9BW11 206 aa17.1■□□□□ 0.33
HMGA1-203ENST00000374116 CD209Q9NNX6 404 aa17.1■□□□□ 0.33
HMGA1-203ENST00000374116 GLRX3O76003 335 aaKnown RBP17.1■□□□□ 0.33
HMGA1-203ENST00000374116 ANAPC15P60006 121 aa17.1■□□□□ 0.33
HMGA1-203ENST00000374116 FOXD4L1Q9NU39 408 aa17.1■□□□□ 0.33
HMGA1-203ENST00000374116 DBNLQ9UJU6 430 aaKnown RBP17.1■□□□□ 0.33
HMGA1-203ENST00000374116 CAVIN4Q5BKX8 364 aa17.09■□□□□ 0.33
HMGA1-203ENST00000374116 CCDC102BQ68D86 513 aa17.09■□□□□ 0.33
HMGA1-203ENST00000374116 ZNF804AQ7Z570 1209 aa17.09■□□□□ 0.33
HMGA1-203ENST00000374116 ZNF526Q8TF50 670 aaPredicted RBP17.09■□□□□ 0.33
HMGA1-203ENST00000374116 CWC22Q9HCG8 908 aaKnown RBP17.09■□□□□ 0.33
HMGA1-203ENST00000374116 ZNRF3Q9ULT6 936 aa17.09■□□□□ 0.33
HMGA1-203ENST00000374116 FZD9O00144 591 aa17.08■□□□□ 0.33
HMGA1-203ENST00000374116 CXCL9Q07325 125 aa17.08■□□□□ 0.33
HMGA1-203ENST00000374116 GORABQ5T7V8 394 aa17.08■□□□□ 0.33
HMGA1-203ENST00000374116 FBXO33Q7Z6M2 555 aa17.08■□□□□ 0.33
HMGA1-203ENST00000374116 MAP7D2Q96T17 732 aa17.08■□□□□ 0.33
HMGA1-203ENST00000374116 ECHDC1Q9NTX5 307 aa17.08■□□□□ 0.33
HMGA1-203ENST00000374116 GJA3Q9Y6H8 435 aa17.08■□□□□ 0.33
HMGA1-203ENST00000374116 DDNO94850 711 aaPredicted RBP17.07■□□□□ 0.32
HMGA1-203ENST00000374116 PI16Q6UXB8 463 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 CLEC17AQ6ZS10 378 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 C15orf52Q6ZUT6 534 aaKnown RBP17.07■□□□□ 0.32
HMGA1-203ENST00000374116 COA1Q9GZY4 146 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 VPS33BQ9H267 617 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 NDUFB9Q9Y6M9 179 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 IFIT2P09913 472 aaKnown RBP17.07■□□□□ 0.32
HMGA1-203ENST00000374116 MCM2P49736 904 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 GTF2IP78347 998 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 CHAF1AQ13111 956 aaPredicted RBP17.07■□□□□ 0.32
HMGA1-203ENST00000374116 CNTROBQ8N137 903 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms