RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 HMMRO75330 724 aa18.63■□□□□ 0.57
SMPDL3A-201ENST00000368440 PHKA1P46020 1223 aa18.63■□□□□ 0.57
SMPDL3A-201ENST00000368440 PCDHB15Q9Y5E8 787 aa18.63■□□□□ 0.57
SMPDL3A-201ENST00000368440 HIRAP54198 1017 aaPredicted RBP18.62■□□□□ 0.57
SMPDL3A-201ENST00000368440 PNMA8AQ86V59 439 aaPredicted RBP18.62■□□□□ 0.57
SMPDL3A-201ENST00000368440 XAGE2Q96GT9 111 aa18.62■□□□□ 0.57
SMPDL3A-201ENST00000368440 NEUROD6Q96NK8 337 aa18.62■□□□□ 0.57
SMPDL3A-201ENST00000368440 H7C1D1 291 aa18.61■□□□□ 0.57
SMPDL3A-201ENST00000368440 CHAF1AQ13111 956 aaPredicted RBP18.61■□□□□ 0.57
SMPDL3A-201ENST00000368440 TBC1D10BQ4KMP7 808 aaPredicted RBP18.61■□□□□ 0.57
SMPDL3A-201ENST00000368440 TNNI3KQ59H18 835 aa18.61■□□□□ 0.57
SMPDL3A-201ENST00000368440 USP50Q70EL3 339 aaPredicted RBP18.61■□□□□ 0.57
SMPDL3A-201ENST00000368440 LDHDQ86WU2 507 aa18.61■□□□□ 0.57
SMPDL3A-201ENST00000368440 KIAA0825Q8IV33 1275 aa18.61■□□□□ 0.57
SMPDL3A-201ENST00000368440 FPGT-TNNI3KV9GXZ4 949 aa18.61■□□□□ 0.57
SMPDL3A-201ENST00000368440 MYO3BQ8WXR4 1341 aa18.61■□□□□ 0.57
SMPDL3A-201ENST00000368440 ZNF280AP59817 542 aaPredicted RBP18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 RBM26Q5T8P6 1007 aaKnown RBP18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 CCDC102BQ68D86 513 aa18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 CLEC11AQ9Y240 323 aa18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 APBB1O00213 710 aa18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 FRAT2O75474 233 aaPredicted RBP18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 NEFLP07196 543 aa18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 USP17L8P0C7I0 530 aa18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 SMC1BQ8NDV3 1235 aa18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 EXOC6Q8TAG9 804 aa18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 GPR108Q9NPR9 543 aa18.6■□□□□ 0.57
SMPDL3A-201ENST00000368440 IRX6P78412 446 aaPredicted RBP18.59■□□□□ 0.57
SMPDL3A-201ENST00000368440 GRIK5Q16478 980 aa18.59■□□□□ 0.57
SMPDL3A-201ENST00000368440 CHADLQ6NUI6 762 aa18.59■□□□□ 0.57
SMPDL3A-201ENST00000368440 F8W031 263 aaPredicted RBP18.58■□□□□ 0.57
SMPDL3A-201ENST00000368440 KIF4BQ2VIQ3 1234 aa18.58■□□□□ 0.57
SMPDL3A-201ENST00000368440 MFSD14BQ5SR56 506 aa18.58■□□□□ 0.57
SMPDL3A-201ENST00000368440 MAP1SQ66K74 1059 aaPredicted RBP18.58■□□□□ 0.57
SMPDL3A-201ENST00000368440 RHPN1Q8TCX5 695 aa18.58■□□□□ 0.57
SMPDL3A-201ENST00000368440 EAF2Q96CJ1 260 aaPredicted RBP18.58■□□□□ 0.57
SMPDL3A-201ENST00000368440 DBNDD2Q9BQY9 259 aa18.58■□□□□ 0.57
SMPDL3A-201ENST00000368440 IL1RAPL2Q9NP60 686 aa18.58■□□□□ 0.57
SMPDL3A-201ENST00000368440 TLR7Q9NYK1 1049 aaKnown RBP18.58■□□□□ 0.57
SMPDL3A-201ENST00000368440 FKBP1AP62942 108 aaKnown RBP18.58■□□□□ 0.56
SMPDL3A-201ENST00000368440 ERC1Q8IUD2 1116 aa18.58■□□□□ 0.56
SMPDL3A-201ENST00000368440 MYOZ2Q9NPC6 264 aa18.58■□□□□ 0.56
SMPDL3A-201ENST00000368440 FSTL1Q12841 308 aa18.57■□□□□ 0.56
SMPDL3A-201ENST00000368440 HSP90AB4PQ58FF6 505 aa18.57■□□□□ 0.56
SMPDL3A-201ENST00000368440 CCDC8Q9H0W5 538 aaPredicted RBP18.57■□□□□ 0.56
SMPDL3A-201ENST00000368440 ASTN2O75129 1339 aaPredicted RBP18.57■□□□□ 0.56
SMPDL3A-201ENST00000368440 RASGRF1Q13972 1273 aa18.56■□□□□ 0.56
SMPDL3A-201ENST00000368440 DBNLQ9UJU6 430 aaKnown RBP18.56■□□□□ 0.56
SMPDL3A-201ENST00000368440 GNL3LQ9NVN8 582 aaKnown RBP18.56■□□□□ 0.56
SMPDL3A-201ENST00000368440 PCDHAC2Q9Y5I4 1007 aa18.56■□□□□ 0.56
SMPDL3A-201ENST00000368440 ECM29Q5VYK3 1845 aa18.56■□□□□ 0.56
SMPDL3A-201ENST00000368440 AKAP11Q9UKA4 1901 aa18.56■□□□□ 0.56
SMPDL3A-201ENST00000368440 POLR2AP24928 1970 aaKnown RBP18.56■□□□□ 0.56
SMPDL3A-201ENST00000368440 GORABQ5T7V8 394 aa18.55■□□□□ 0.56
SMPDL3A-201ENST00000368440 OGFOD1Q8N543 542 aa18.55■□□□□ 0.56
SMPDL3A-201ENST00000368440 KIF1BPQ96EK5 621 aa18.55■□□□□ 0.56
SMPDL3A-201ENST00000368440 SCARF1Q14162 830 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 PI16Q6UXB8 463 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 AACSQ86V21 672 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 BCL11AQ9H165 835 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 PGAP2Q9UHJ9 254 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 SEMA3EO15041 775 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 RAB11FIP3O75154 756 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 ARID4AP29374 1257 aaPredicted RBP18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 NBPF9Q3BBW0 867 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 CNTROBQ8N137 903 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 TBC1D22AQ8WUA7 517 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 DCTPP1Q9H773 170 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 HDAC9Q9UKV0 1011 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 DENND2AQ9ULE3 1009 aa18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 TTF2Q9UNY4 1162 aaKnown RBP18.54■□□□□ 0.56
SMPDL3A-201ENST00000368440 ITGBL1O95965 494 aaPredicted RBP18.53■□□□□ 0.56
SMPDL3A-201ENST00000368440 FMR1Q06787 632 aaKnown RBP eCLIP18.53■□□□□ 0.56
SMPDL3A-201ENST00000368440 AOX1Q06278 1338 aa18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 WNT10BO00744 389 aa18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 ZBTB22O15209 634 aa18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 SMARCA5O60264 1052 aaPredicted RBP18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 MCAMP43121 646 aa18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 WDR66Q8TBY9 1149 aa18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 ZC3H15Q8WU90 426 aaKnown RBP18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 ZBED3Q96IU2 234 aaPredicted RBP18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 GGA3Q9NZ52 723 aa18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 HMG20BQ9P0W2 317 aa18.52■□□□□ 0.56
SMPDL3A-201ENST00000368440 TTC39AQ5SRH9 613 aa18.52■□□□□ 0.55
SMPDL3A-201ENST00000368440 GLIS2Q9BZE0 524 aaPredicted RBP18.52■□□□□ 0.55
SMPDL3A-201ENST00000368440 MYO5AQ9Y4I1 1855 aaKnown RBP18.51■□□□□ 0.55
SMPDL3A-201ENST00000368440 PASKQ96RG2 1323 aa18.51■□□□□ 0.55
SMPDL3A-201ENST00000368440 PRDX5P30044 214 aa18.51■□□□□ 0.55
SMPDL3A-201ENST00000368440 CFAP100Q494V2 611 aa18.51■□□□□ 0.55
SMPDL3A-201ENST00000368440 DLK2Q6UY11 383 aa18.51■□□□□ 0.55
SMPDL3A-201ENST00000368440 CLASRPQ8N2M8 674 aaKnown RBP18.51■□□□□ 0.55
SMPDL3A-201ENST00000368440 SCAF8Q9UPN6 1271 aaKnown RBP18.51■□□□□ 0.55
SMPDL3A-201ENST00000368440 PDS5AQ29RF7 1337 aaKnown RBP18.5■□□□□ 0.55
SMPDL3A-201ENST00000368440 SALL1Q9NSC2 1324 aa18.5■□□□□ 0.55
SMPDL3A-201ENST00000368440 TRAF5O00463 557 aa18.5■□□□□ 0.55
SMPDL3A-201ENST00000368440 CCDC158Q5M9N0 1113 aa18.5■□□□□ 0.55
SMPDL3A-201ENST00000368440 ANGEL2Q5VTE6 544 aaKnown RBP18.5■□□□□ 0.55
SMPDL3A-201ENST00000368440 LRRCC1Q9C099 1032 aa18.5■□□□□ 0.55
SMPDL3A-201ENST00000368440 TRPM7Q96QT4 1865 aa18.5■□□□□ 0.55
SMPDL3A-201ENST00000368440 UQCRFS1P1P0C7P4 283 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms