RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 ZBED3Q96IU2 234 aaPredicted RBP23.67■■□□□ 1.38
CKS1B-203ENST00000368439 WNT10BO00744 389 aa23.66■■□□□ 1.38
CKS1B-203ENST00000368439 CIAO1O76071 339 aa23.66■■□□□ 1.38
CKS1B-203ENST00000368439 COPRSQ9NQ92 184 aa23.66■■□□□ 1.38
CKS1B-203ENST00000368439 JAG2Q9Y219 1238 aa23.66■■□□□ 1.38
CKS1B-203ENST00000368439 PITPNM2Q9BZ72 1349 aa23.65■■□□□ 1.38
CKS1B-203ENST00000368439 SAPCD2Q86UD0 394 aa23.65■■□□□ 1.38
CKS1B-203ENST00000368439 SIL1Q9H173 461 aa23.65■■□□□ 1.38
CKS1B-203ENST00000368439 PA2G4Q9UQ80 394 aaKnown RBP23.65■■□□□ 1.38
CKS1B-203ENST00000368439 ECM29Q5VYK3 1845 aa23.65■■□□□ 1.38
CKS1B-203ENST00000368439 THSD7BQ9C0I4 1608 aa23.64■■□□□ 1.38
CKS1B-203ENST00000368439 RLBP1P12271 317 aa23.64■■□□□ 1.37
CKS1B-203ENST00000368439 PUM3Q15397 648 aaKnown RBP23.64■■□□□ 1.37
CKS1B-203ENST00000368439 ZNF408Q9H9D4 720 aa23.64■■□□□ 1.37
CKS1B-203ENST00000368439 SULF1Q8IWU6 871 aa23.63■■□□□ 1.37
CKS1B-203ENST00000368439 HDAC9Q9UKV0 1011 aa23.63■■□□□ 1.37
CKS1B-203ENST00000368439 GNAI2P04899 355 aa23.62■■□□□ 1.37
CKS1B-203ENST00000368439 BCAMP50895 628 aa23.62■■□□□ 1.37
CKS1B-203ENST00000368439 MTMR14Q8NCE2 650 aa23.62■■□□□ 1.37
CKS1B-203ENST00000368439 MYH13Q9UKX3 1938 aa23.62■■□□□ 1.37
CKS1B-203ENST00000368439 WDR33Q9C0J8 1336 aaKnown RBP23.61■■□□□ 1.37
CKS1B-203ENST00000368439 SRGAP3O43295 1099 aa23.61■■□□□ 1.37
CKS1B-203ENST00000368439 IL15P40933 162 aaPredicted RBP23.61■■□□□ 1.37
CKS1B-203ENST00000368439 CAVIN4Q5BKX8 364 aa23.61■■□□□ 1.37
CKS1B-203ENST00000368439 DZIP1LQ8IYY4 767 aaKnown RBP23.61■■□□□ 1.37
CKS1B-203ENST00000368439 LPIN2Q92539 896 aa23.61■■□□□ 1.37
CKS1B-203ENST00000368439 CDCA5Q96FF9 252 aa23.61■■□□□ 1.37
CKS1B-203ENST00000368439 SCAF8Q9UPN6 1271 aaKnown RBP23.61■■□□□ 1.37
CKS1B-203ENST00000368439 PCDHAC2Q9Y5I4 1007 aa23.61■■□□□ 1.37
CKS1B-203ENST00000368439 IFIT1P09914 478 aaKnown RBP23.6■■□□□ 1.37
CKS1B-203ENST00000368439 HHIPL1Q96JK4 782 aa23.6■■□□□ 1.37
CKS1B-203ENST00000368439 IQSEC3Q9UPP2 1182 aaPredicted RBP23.6■■□□□ 1.37
CKS1B-203ENST00000368439 F8W031 263 aaPredicted RBP23.59■■□□□ 1.37
CKS1B-203ENST00000368439 HSPA1AP0DMV8 641 aaKnown RBP23.59■■□□□ 1.37
CKS1B-203ENST00000368439 HSPA1BP0DMV9 641 aaKnown RBP23.59■■□□□ 1.37
CKS1B-203ENST00000368439 MFSD14BQ5SR56 506 aa23.59■■□□□ 1.37
CKS1B-203ENST00000368439 CYP4F22Q6NT55 531 aa23.59■■□□□ 1.37
CKS1B-203ENST00000368439 VPS37DQ86XT2 251 aa23.59■■□□□ 1.37
CKS1B-203ENST00000368439 CAPNS2Q96L46 248 aa23.59■■□□□ 1.37
CKS1B-203ENST00000368439 CEP126Q9P2H0 1117 aa23.59■■□□□ 1.37
CKS1B-203ENST00000368439 PNMA6EA0A0J9YXQ4 647 aa23.58■■□□□ 1.37
CKS1B-203ENST00000368439 ZBTB7BO15156 539 aaPredicted RBP23.58■■□□□ 1.37
CKS1B-203ENST00000368439 SLC5A1P13866 664 aa23.58■■□□□ 1.37
CKS1B-203ENST00000368439 FTSJ3Q8IY81 847 aaKnown RBP23.58■■□□□ 1.37
CKS1B-203ENST00000368439 GBA2Q9HCG7 927 aaPredicted RBP23.58■■□□□ 1.37
CKS1B-203ENST00000368439 DLGAP5Q15398 846 aa23.57■■□□□ 1.36
CKS1B-203ENST00000368439 GRIK5Q16478 980 aa23.57■■□□□ 1.36
CKS1B-203ENST00000368439 ATP2B3Q16720 1220 aa23.57■■□□□ 1.36
CKS1B-203ENST00000368439 CFAP100Q494V2 611 aa23.57■■□□□ 1.36
CKS1B-203ENST00000368439 AOX1Q06278 1338 aa23.57■■□□□ 1.36
CKS1B-203ENST00000368439 PRMT6Q96LA8 375 aaPredicted RBP23.56■■□□□ 1.36
CKS1B-203ENST00000368439 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.56■■□□□ 1.36
CKS1B-203ENST00000368439 COL1A1P02452 1464 aaPredicted RBP23.56■■□□□ 1.36
CKS1B-203ENST00000368439 SPDYE2BA6NHP3 402 aa23.55■■□□□ 1.36
CKS1B-203ENST00000368439 SPDYE6P0CI01 402 aa23.55■■□□□ 1.36
CKS1B-203ENST00000368439 ECE1P42892 770 aa23.55■■□□□ 1.36
CKS1B-203ENST00000368439 ITPRIPQ8IWB1 547 aa23.55■■□□□ 1.36
CKS1B-203ENST00000368439 TTF2Q9UNY4 1162 aaKnown RBP23.55■■□□□ 1.36
CKS1B-203ENST00000368439 PAPPA2Q9BXP8 1791 aa23.55■■□□□ 1.36
CKS1B-203ENST00000368439 HUNKP57058 714 aa23.54■■□□□ 1.36
CKS1B-203ENST00000368439 CHAF1AQ13111 956 aaPredicted RBP23.54■■□□□ 1.36
CKS1B-203ENST00000368439 POLA2Q14181 598 aa23.54■■□□□ 1.36
CKS1B-203ENST00000368439 PRAMEF18Q5VWM3 479 aa23.54■■□□□ 1.36
CKS1B-203ENST00000368439 PAXIP1Q6ZW49 1069 aaPredicted RBP23.54■■□□□ 1.36
CKS1B-203ENST00000368439 C2orf69Q8N8R5 385 aa23.54■■□□□ 1.36
CKS1B-203ENST00000368439 PANK1Q8TE04 598 aa23.54■■□□□ 1.36
CKS1B-203ENST00000368439 WBP1LQ9NX94 342 aa23.54■■□□□ 1.36
CKS1B-203ENST00000368439 APOBEC3FQ8IUX4 373 aaKnown RBP23.53■■□□□ 1.36
CKS1B-203ENST00000368439 TBC1D22AQ8WUA7 517 aa23.53■■□□□ 1.36
CKS1B-203ENST00000368439 C1orf115Q9H7X2 142 aa23.53■■□□□ 1.36
CKS1B-203ENST00000368439 SERPINA10Q9UK55 444 aa23.53■■□□□ 1.36
CKS1B-203ENST00000368439 ZBTB22O15209 634 aa23.52■■□□□ 1.36
CKS1B-203ENST00000368439 FRAT2O75474 233 aaPredicted RBP23.52■■□□□ 1.36
CKS1B-203ENST00000368439 ATP8B2P98198 1209 aa23.52■■□□□ 1.36
CKS1B-203ENST00000368439 TFCP2Q12800 502 aa23.52■■□□□ 1.36
CKS1B-203ENST00000368439 AOC2O75106 756 aa23.51■■□□□ 1.35
CKS1B-203ENST00000368439 ADORA1P30542 326 aa23.51■■□□□ 1.35
CKS1B-203ENST00000368439 TIMM10P62072 90 aa23.51■■□□□ 1.35
CKS1B-203ENST00000368439 GRM1Q13255 1194 aa23.51■■□□□ 1.35
CKS1B-203ENST00000368439 SSH3Q8TE77 659 aa23.51■■□□□ 1.35
CKS1B-203ENST00000368439 RCAN3Q9UKA8 241 aa23.51■■□□□ 1.35
CKS1B-203ENST00000368439 FAM155AB1AL88 458 aaPredicted RBP23.5■■□□□ 1.35
CKS1B-203ENST00000368439 MAP2K2P36507 400 aa23.5■■□□□ 1.35
CKS1B-203ENST00000368439 PHKA1P46020 1223 aa23.5■■□□□ 1.35
CKS1B-203ENST00000368439 FKBP1BP68106 108 aa23.5■■□□□ 1.35
CKS1B-203ENST00000368439 RGMBQ6NW40 437 aa23.5■■□□□ 1.35
CKS1B-203ENST00000368439 CLRN2A0PK11 232 aa23.49■■□□□ 1.35
CKS1B-203ENST00000368439 FOXN1O15353 648 aa23.49■■□□□ 1.35
CKS1B-203ENST00000368439 CRKP46108 304 aa23.49■■□□□ 1.35
CKS1B-203ENST00000368439 HDLBPQ00341 1268 aaKnown RBP23.49■■□□□ 1.35
CKS1B-203ENST00000368439 MOB2Q70IA6 237 aa23.49■■□□□ 1.35
CKS1B-203ENST00000368439 DEFB129Q9H1M3 183 aa23.49■■□□□ 1.35
CKS1B-203ENST00000368439 SUGT1Q9Y2Z0 365 aa23.49■■□□□ 1.35
CKS1B-203ENST00000368439 A0A1B0GUL7 405 aa23.48■■□□□ 1.35
CKS1B-203ENST00000368439 RBM5P52756 815 aaKnown RBP eCLIP23.48■■□□□ 1.35
CKS1B-203ENST00000368439 MAP2K1Q02750 393 aaPredicted RBP23.48■■□□□ 1.35
CKS1B-203ENST00000368439 SPDYE2Q495Y8 402 aa23.48■■□□□ 1.35
CKS1B-203ENST00000368439 CCDC102BQ68D86 513 aa23.48■■□□□ 1.35
CKS1B-203ENST00000368439 ZIC5Q96T25 663 aa23.48■■□□□ 1.35
CKS1B-203ENST00000368439 MRIQ9BWK5 157 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms