RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 RPAP1Q9BWH6 1393 aaPredicted RBP13.76□□□□□ -0.21
USF1-201ENST00000368019 TRAF5O00463 557 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 SLC4A2P04920 1241 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 HSPA4P34932 840 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 GRAPQ13588 217 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 DPP8Q6V1X1 898 aaPredicted RBP13.76□□□□□ -0.21
USF1-201ENST00000368019 MPNDQ8N594 471 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 GRAPLQ8TC17 118 aaPredicted RBP13.76□□□□□ -0.21
USF1-201ENST00000368019 PKNOX2Q96KN3 472 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 PRIMPOLQ96LW4 560 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 ISCA1Q9BUE6 129 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 STK31Q9BXU1 1019 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 CHMP4AQ9BY43 222 aa13.76□□□□□ -0.21
USF1-201ENST00000368019 RBM27Q9P2N5 1060 aaKnown RBP13.76□□□□□ -0.21
USF1-201ENST00000368019 TRMT112Q9UI30 125 aaKnown RBP13.76□□□□□ -0.21
USF1-201ENST00000368019 ABT1Q9ULW3 272 aaKnown RBP13.76□□□□□ -0.21
USF1-201ENST00000368019 CDHR2Q9BYE9 1310 aa13.75□□□□□ -0.21
USF1-201ENST00000368019 TPM3P06753 285 aa13.75□□□□□ -0.21
USF1-201ENST00000368019 HOXB7P09629 217 aa13.75□□□□□ -0.21
USF1-201ENST00000368019 HSPA8P11142 646 aaKnown RBP13.75□□□□□ -0.21
USF1-201ENST00000368019 GMPSP49915 693 aaPredicted RBP13.75□□□□□ -0.21
USF1-201ENST00000368019 LBX1P52954 281 aa13.75□□□□□ -0.21
USF1-201ENST00000368019 MAP2K1Q02750 393 aaPredicted RBP13.75□□□□□ -0.21
USF1-201ENST00000368019 CCDC30Q5VVM6 783 aa13.75□□□□□ -0.21
USF1-201ENST00000368019 DDX46Q7L014 1031 aaKnown RBP13.75□□□□□ -0.21
USF1-201ENST00000368019 PLBD2Q8NHP8 589 aa13.75□□□□□ -0.21
USF1-201ENST00000368019 CHPF2Q9P2E5 772 aa13.75□□□□□ -0.21
USF1-201ENST00000368019 R3HCC1Q9Y3T6 440 aaKnown RBP13.75□□□□□ -0.21
USF1-201ENST00000368019 UQCRHLA0A096LP55 91 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 UQCRHP07919 91 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 HMGN5P82970 282 aaKnown RBP13.74□□□□□ -0.21
USF1-201ENST00000368019 SF3B3Q15393 1217 aaKnown RBP13.74□□□□□ -0.21
USF1-201ENST00000368019 CCDC183Q5T5S1 534 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 CIAPIN1Q6FI81 312 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 ANKRD13DQ6ZTN6 518 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 TMC4Q7Z404 712 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 CAPNS2Q96L46 248 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 ATP6V1DQ9Y5K8 247 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 TLL2Q9Y6L7 1015 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 COL4A1P02462 1669 aa13.74□□□□□ -0.21
USF1-201ENST00000368019 RAD50Q92878 1312 aa13.73□□□□□ -0.21
USF1-201ENST00000368019 YDJCA8MPS7 323 aa13.73□□□□□ -0.21
USF1-201ENST00000368019 HIRAP54198 1017 aaPredicted RBP13.73□□□□□ -0.21
USF1-201ENST00000368019 DBF4Q9UBU7 674 aaPredicted RBP13.73□□□□□ -0.21
USF1-201ENST00000368019 RAD17O75943 681 aa13.72□□□□□ -0.21
USF1-201ENST00000368019 GTF2F1P35269 517 aaKnown RBP eCLIP13.72□□□□□ -0.21
USF1-201ENST00000368019 ECE1P42892 770 aa13.72□□□□□ -0.21
USF1-201ENST00000368019 TRIM28Q13263 835 aaKnown RBP13.72□□□□□ -0.21
USF1-201ENST00000368019 TNIP1Q15025 636 aa13.72□□□□□ -0.21
USF1-201ENST00000368019 HDGFL1Q5TGJ6 251 aa13.72□□□□□ -0.21
USF1-201ENST00000368019 CYP4F22Q6NT55 531 aa13.72□□□□□ -0.21
USF1-201ENST00000368019 SSH3Q8TE77 659 aa13.72□□□□□ -0.21
USF1-201ENST00000368019 ZC3H15Q8WU90 426 aaKnown RBP13.72□□□□□ -0.21
USF1-201ENST00000368019 PIBF1Q8WXW3 757 aa13.72□□□□□ -0.21
USF1-201ENST00000368019 ZMYND15Q9H091 742 aa13.72□□□□□ -0.21
USF1-201ENST00000368019 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.72□□□□□ -0.21
USF1-201ENST00000368019 FLIIQ13045 1269 aa13.71□□□□□ -0.21
USF1-201ENST00000368019 POLA2Q14181 598 aa13.71□□□□□ -0.21
USF1-201ENST00000368019 SAPCD2Q86UD0 394 aa13.71□□□□□ -0.21
USF1-201ENST00000368019 MYRIPQ8NFW9 859 aa13.71□□□□□ -0.21
USF1-201ENST00000368019 CELF1Q92879 486 aaKnown RBP13.71□□□□□ -0.21
USF1-201ENST00000368019 FAM89AQ96GI7 184 aa13.71□□□□□ -0.21
USF1-201ENST00000368019 GPR101Q96P66 508 aaPredicted RBP13.71□□□□□ -0.21
USF1-201ENST00000368019 GLIS2Q9BZE0 524 aaPredicted RBP13.71□□□□□ -0.21
USF1-201ENST00000368019 NSFL1CQ9UNZ2 370 aaKnown RBP13.71□□□□□ -0.21
USF1-201ENST00000368019 SCN9AQ15858 1988 aa13.71□□□□□ -0.22
USF1-201ENST00000368019 SHTN1A0MZ66 631 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 ATP5J2-PTCD1G3V325 749 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 MAP2K2P36507 400 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 UBE2HP62256 183 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 HSP90AB4PQ58FF6 505 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 G2E3Q7L622 706 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 SMAP1Q8IYB5 467 aaPredicted RBP13.7□□□□□ -0.22
USF1-201ENST00000368019 TRPM4Q8TD43 1214 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 HHIPL1Q96JK4 782 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 TTC14Q96N46 770 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 ANO2Q9NQ90 1003 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 HYPKQ9NX55 129 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 CNOT7Q9UIV1 285 aaKnown RBP13.7□□□□□ -0.22
USF1-201ENST00000368019 PALD1Q9ULE6 856 aa13.7□□□□□ -0.22
USF1-201ENST00000368019 TTC41PQ6P2S7 1318 aa13.69□□□□□ -0.22
USF1-201ENST00000368019 TCHHQ07283 1943 aa13.69□□□□□ -0.22
USF1-201ENST00000368019 SGSM2O43147 1006 aa13.69□□□□□ -0.22
USF1-201ENST00000368019 CELF2O95319 508 aaKnown RBP13.69□□□□□ -0.22
USF1-201ENST00000368019 PTMAP06454 111 aaKnown RBP13.69□□□□□ -0.22
USF1-201ENST00000368019 DPF2Q92785 391 aa13.69□□□□□ -0.22
USF1-201ENST00000368019 KCNB2Q92953 911 aa13.69□□□□□ -0.22
USF1-201ENST00000368019 ZSCAN31Q96LW9 406 aaPredicted RBP13.69□□□□□ -0.22
USF1-201ENST00000368019 TM6SF1Q9BZW5 370 aa13.69□□□□□ -0.22
USF1-201ENST00000368019 SPTLC3Q9NUV7 552 aa13.69□□□□□ -0.22
USF1-201ENST00000368019 POLLQ9UGP5 575 aa13.69□□□□□ -0.22
USF1-201ENST00000368019 CASP8AP2Q9UKL3 1982 aa13.69□□□□□ -0.22
USF1-201ENST00000368019 CCDC171Q6TFL3 1326 aa13.68□□□□□ -0.22
USF1-201ENST00000368019 AOC2O75106 756 aa13.68□□□□□ -0.22
USF1-201ENST00000368019 ZSCAN22P10073 491 aaPredicted RBP13.68□□□□□ -0.22
USF1-201ENST00000368019 WASHC4Q2M389 1173 aa13.68□□□□□ -0.22
USF1-201ENST00000368019 CDC37L1Q7L3B6 337 aa13.68□□□□□ -0.22
USF1-201ENST00000368019 USP25Q9UHP3 1055 aa13.68□□□□□ -0.22
USF1-201ENST00000368019 EXOC6BQ9Y2D4 811 aa13.68□□□□□ -0.22
USF1-201ENST00000368019 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms