RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 TFCP2Q12800 502 aa21■□□□□ 0.95
CLN3-203ENST00000357806 MAP1SQ66K74 1059 aaPredicted RBP21■□□□□ 0.95
CLN3-203ENST00000357806 ZC3H15Q8WU90 426 aaKnown RBP21■□□□□ 0.95
CLN3-203ENST00000357806 BCAMP50895 628 aa20.99■□□□□ 0.95
CLN3-203ENST00000357806 HIRAP54198 1017 aaPredicted RBP20.99■□□□□ 0.95
CLN3-203ENST00000357806 OS9Q13438 667 aaPredicted RBP20.99■□□□□ 0.95
CLN3-203ENST00000357806 CNTROBQ8N137 903 aa20.99■□□□□ 0.95
CLN3-203ENST00000357806 MYOZ2Q9NPC6 264 aa20.99■□□□□ 0.95
CLN3-203ENST00000357806 HDAC9Q9UKV0 1011 aa20.99■□□□□ 0.95
CLN3-203ENST00000357806 SURF6O75683 361 aaKnown RBP20.98■□□□□ 0.95
CLN3-203ENST00000357806 EGFRP00533 1210 aa20.98■□□□□ 0.95
CLN3-203ENST00000357806 APLP1P51693 650 aa20.98■□□□□ 0.95
CLN3-203ENST00000357806 RBM26Q5T8P6 1007 aaKnown RBP20.98■□□□□ 0.95
CLN3-203ENST00000357806 KIAA0825Q8IV33 1275 aa20.98■□□□□ 0.95
CLN3-203ENST00000357806 RPAP2Q8IXW5 612 aaPredicted RBP20.98■□□□□ 0.95
CLN3-203ENST00000357806 IQSEC3Q9UPP2 1182 aaPredicted RBP20.98■□□□□ 0.95
CLN3-203ENST00000357806 JAG2Q9Y219 1238 aa20.98■□□□□ 0.95
CLN3-203ENST00000357806 A0A1B0GUL7 405 aa20.97■□□□□ 0.95
CLN3-203ENST00000357806 CERS5Q8N5B7 392 aa20.97■□□□□ 0.95
CLN3-203ENST00000357806 PGAP2Q9UHJ9 254 aa20.97■□□□□ 0.95
CLN3-203ENST00000357806 NOP58Q9Y2X3 529 aaKnown RBP20.97■□□□□ 0.95
CLN3-203ENST00000357806 PASKQ96RG2 1323 aa20.97■□□□□ 0.95
CLN3-203ENST00000357806 HMMRO75330 724 aa20.96■□□□□ 0.95
CLN3-203ENST00000357806 ITGBL1O95965 494 aaPredicted RBP20.96■□□□□ 0.95
CLN3-203ENST00000357806 MFSD14BQ5SR56 506 aa20.96■□□□□ 0.95
CLN3-203ENST00000357806 TBC1D22AQ8WUA7 517 aa20.95■□□□□ 0.94
CLN3-203ENST00000357806 GNL3LQ9NVN8 582 aaKnown RBP20.95■□□□□ 0.94
CLN3-203ENST00000357806 CHAF1AQ13111 956 aaPredicted RBP20.94■□□□□ 0.94
CLN3-203ENST00000357806 COL1A1P02452 1464 aaPredicted RBP20.94■□□□□ 0.94
CLN3-203ENST00000357806 AKAP11Q9UKA4 1901 aa20.94■□□□□ 0.94
CLN3-203ENST00000357806 MYH2Q9UKX2 1941 aa20.94■□□□□ 0.94
CLN3-203ENST00000357806 ADORA1P30542 326 aa20.94■□□□□ 0.94
CLN3-203ENST00000357806 TIMM10P62072 90 aa20.94■□□□□ 0.94
CLN3-203ENST00000357806 XAGE2Q96GT9 111 aa20.94■□□□□ 0.94
CLN3-203ENST00000357806 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.94■□□□□ 0.94
CLN3-203ENST00000357806 F8W031 263 aaPredicted RBP20.93■□□□□ 0.94
CLN3-203ENST00000357806 PHKA1P46020 1223 aa20.93■□□□□ 0.94
CLN3-203ENST00000357806 HSP90AB4PQ58FF6 505 aa20.93■□□□□ 0.94
CLN3-203ENST00000357806 CCDC102BQ68D86 513 aa20.93■□□□□ 0.94
CLN3-203ENST00000357806 ERC1Q8IUD2 1116 aa20.93■□□□□ 0.94
CLN3-203ENST00000357806 DCPSQ96C86 337 aaKnown RBP20.93■□□□□ 0.94
CLN3-203ENST00000357806 NEUROD6Q96NK8 337 aa20.93■□□□□ 0.94
CLN3-203ENST00000357806 GPR108Q9NPR9 543 aa20.93■□□□□ 0.94
CLN3-203ENST00000357806 GGA3Q9NZ52 723 aa20.93■□□□□ 0.94
CLN3-203ENST00000357806 SEMA3EO15041 775 aa20.92■□□□□ 0.94
CLN3-203ENST00000357806 SCARF1Q14162 830 aa20.92■□□□□ 0.94
CLN3-203ENST00000357806 CDC37L1Q7L3B6 337 aa20.92■□□□□ 0.94
CLN3-203ENST00000357806 EXOC6BQ9Y2D4 811 aa20.92■□□□□ 0.94
CLN3-203ENST00000357806 ZBTB22O15209 634 aa20.91■□□□□ 0.94
CLN3-203ENST00000357806 TNNI3KQ59H18 835 aa20.91■□□□□ 0.94
CLN3-203ENST00000357806 WDR66Q8TBY9 1149 aa20.91■□□□□ 0.94
CLN3-203ENST00000357806 GLIS2Q9BZE0 524 aaPredicted RBP20.91■□□□□ 0.94
CLN3-203ENST00000357806 DENND2AQ9ULE3 1009 aa20.91■□□□□ 0.94
CLN3-203ENST00000357806 FPGT-TNNI3KV9GXZ4 949 aa20.91■□□□□ 0.94
CLN3-203ENST00000357806 MAST2Q6P0Q8 1798 aa20.91■□□□□ 0.94
CLN3-203ENST00000357806 PITPNM2Q9BZ72 1349 aa20.9■□□□□ 0.94
CLN3-203ENST00000357806 MYO5AQ9Y4I1 1855 aaKnown RBP20.9■□□□□ 0.94
CLN3-203ENST00000357806 WNT10BO00744 389 aa20.9■□□□□ 0.94
CLN3-203ENST00000357806 GORABQ5T7V8 394 aa20.9■□□□□ 0.94
CLN3-203ENST00000357806 SIRT2Q8IXJ6 389 aa20.9■□□□□ 0.94
CLN3-203ENST00000357806 TTF2Q9UNY4 1162 aaKnown RBP20.9■□□□□ 0.94
CLN3-203ENST00000357806 ASTN2O75129 1339 aaPredicted RBP20.89■□□□□ 0.94
CLN3-203ENST00000357806 DLGAP5Q15398 846 aa20.89■□□□□ 0.94
CLN3-203ENST00000357806 NBPF9Q3BBW0 867 aa20.89■□□□□ 0.94
CLN3-203ENST00000357806 ANGEL2Q5VTE6 544 aaKnown RBP20.89■□□□□ 0.94
CLN3-203ENST00000357806 KRT26Q7Z3Y9 468 aa20.89■□□□□ 0.94
CLN3-203ENST00000357806 SULF1Q8IWU6 871 aa20.89■□□□□ 0.94
CLN3-203ENST00000357806 MTMR14Q8NCE2 650 aa20.89■□□□□ 0.94
CLN3-203ENST00000357806 CREBZFQ9NS37 354 aa20.89■□□□□ 0.94
CLN3-203ENST00000357806 SUGT1Q9Y2Z0 365 aa20.89■□□□□ 0.94
CLN3-203ENST00000357806 CEP350Q5VT06 3117 aa20.89■□□□□ 0.93
CLN3-203ENST00000357806 MAST3O60307 1309 aa20.89■□□□□ 0.93
CLN3-203ENST00000357806 TRAF5O00463 557 aa20.88■□□□□ 0.93
CLN3-203ENST00000357806 PDS5AQ29RF7 1337 aaKnown RBP20.88■□□□□ 0.93
CLN3-203ENST00000357806 TMEM88BA6NKF7 163 aa20.88■□□□□ 0.93
CLN3-203ENST00000357806 HTRA3P83110 453 aa20.88■□□□□ 0.93
CLN3-203ENST00000357806 CFAP100Q494V2 611 aa20.88■□□□□ 0.93
CLN3-203ENST00000357806 ZBED3Q96IU2 234 aaPredicted RBP20.88■□□□□ 0.93
CLN3-203ENST00000357806 SERPINA10Q9UK55 444 aa20.88■□□□□ 0.93
CLN3-203ENST00000357806 SALL1Q9NSC2 1324 aa20.87■□□□□ 0.93
CLN3-203ENST00000357806 RBM5P52756 815 aaKnown RBP eCLIP20.87■□□□□ 0.93
CLN3-203ENST00000357806 RASGRF1Q13972 1273 aa20.87■□□□□ 0.93
CLN3-203ENST00000357806 USP48Q86UV5 1035 aa20.87■□□□□ 0.93
CLN3-203ENST00000357806 CRBNQ96SW2 442 aa20.87■□□□□ 0.93
CLN3-203ENST00000357806 DOCK2Q92608 1830 aa20.86■□□□□ 0.93
CLN3-203ENST00000357806 ADM5C9JUS6 153 aa20.86■□□□□ 0.93
CLN3-203ENST00000357806 MYO1BO43795 1136 aa20.86■□□□□ 0.93
CLN3-203ENST00000357806 FMR1Q06787 632 aaKnown RBP eCLIP20.86■□□□□ 0.93
CLN3-203ENST00000357806 ZGPATQ8N5A5 531 aaKnown RBP20.86■□□□□ 0.93
CLN3-203ENST00000357806 KIF1BPQ96EK5 621 aa20.86■□□□□ 0.93
CLN3-203ENST00000357806 SPDYE2BA6NHP3 402 aa20.85■□□□□ 0.93
CLN3-203ENST00000357806 SPDYE6P0CI01 402 aa20.85■□□□□ 0.93
CLN3-203ENST00000357806 ARID4AP29374 1257 aaPredicted RBP20.85■□□□□ 0.93
CLN3-203ENST00000357806 HDLBPQ00341 1268 aaKnown RBP20.85■□□□□ 0.93
CLN3-203ENST00000357806 GRIK5Q16478 980 aa20.85■□□□□ 0.93
CLN3-203ENST00000357806 APOBEC3FQ8IUX4 373 aaKnown RBP20.85■□□□□ 0.93
CLN3-203ENST00000357806 RHPN1Q8TCX5 695 aa20.85■□□□□ 0.93
CLN3-203ENST00000357806 DBNDD2Q9BQY9 259 aa20.85■□□□□ 0.93
CLN3-203ENST00000357806 RAB11FIP3O75154 756 aa20.84■□□□□ 0.93
CLN3-203ENST00000357806 UQCRFS1P1P0C7P4 283 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms