RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 F8W031 263 aaPredicted RBP14.41□□□□□ -0.1
RTN3-204ENST00000354497 KLRK1P26718 216 aa14.41□□□□□ -0.1
RTN3-204ENST00000354497 KCNJ4P48050 445 aa14.41□□□□□ -0.1
RTN3-204ENST00000354497 SLC9C1Q4G0N8 1177 aa14.41□□□□□ -0.1
RTN3-204ENST00000354497 ERICH6BQ5W0A0 696 aa14.41□□□□□ -0.1
RTN3-204ENST00000354497 BSDC1Q9NW68 430 aaPredicted RBP14.41□□□□□ -0.1
RTN3-204ENST00000354497 SSC5DA1L4H1 1573 aa14.41□□□□□ -0.1
RTN3-204ENST00000354497 DDX58O95786 925 aaKnown RBP14.41□□□□□ -0.1
RTN3-204ENST00000354497 IGHMBP2P38935 993 aaKnown RBP14.41□□□□□ -0.1
RTN3-204ENST00000354497 IREB2P48200 963 aaKnown RBP14.41□□□□□ -0.1
RTN3-204ENST00000354497 MMP14P50281 582 aa14.41□□□□□ -0.1
RTN3-204ENST00000354497 MBIPQ9NS73 344 aa14.41□□□□□ -0.1
RTN3-204ENST00000354497 H0YGN5 161 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 MAP3K11Q16584 847 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 SUPT20HL1Q3ZLR7 823 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 NBPF11Q86T75 865 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 TTLL11Q8NHH1 800 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 ZBED3Q96IU2 234 aaPredicted RBP14.4□□□□□ -0.1
RTN3-204ENST00000354497 ZNF333Q96JL9 665 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 METTL22Q9BUU2 404 aaPredicted RBP14.4□□□□□ -0.1
RTN3-204ENST00000354497 ELP3Q9H9T3 547 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 LEMD3Q9Y2U8 911 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 PCDHAC2Q9Y5I4 1007 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 PTCH2Q9Y6C5 1203 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 ZNF646O15015 1829 aaPredicted RBP14.4□□□□□ -0.1
RTN3-204ENST00000354497 ZNF804BA4D1E1 1349 aa14.4□□□□□ -0.1
RTN3-204ENST00000354497 MYO1BO43795 1136 aa14.39□□□□□ -0.11
RTN3-204ENST00000354497 GJA5P36382 358 aa14.39□□□□□ -0.11
RTN3-204ENST00000354497 NBPF12Q5TAG4 269 aaPredicted RBP14.39□□□□□ -0.11
RTN3-204ENST00000354497 CHRDL2Q6WN34 429 aa14.39□□□□□ -0.11
RTN3-204ENST00000354497 RUNDC1Q96C34 613 aa14.39□□□□□ -0.11
RTN3-204ENST00000354497 MAP3K2Q9Y2U5 619 aa14.39□□□□□ -0.11
RTN3-204ENST00000354497 PPP2R3BQ9Y5P8 575 aa14.39□□□□□ -0.11
RTN3-204ENST00000354497 RBM5P52756 815 aaKnown RBP eCLIP14.38□□□□□ -0.11
RTN3-204ENST00000354497 CAP1Q01518 475 aa14.38□□□□□ -0.11
RTN3-204ENST00000354497 ARHGEF6Q15052 776 aa14.38□□□□□ -0.11
RTN3-204ENST00000354497 WDR43Q15061 677 aaKnown RBP eCLIP14.38□□□□□ -0.11
RTN3-204ENST00000354497 CFAP100Q494V2 611 aa14.38□□□□□ -0.11
RTN3-204ENST00000354497 DIEXFQ68CQ4 756 aaKnown RBP14.38□□□□□ -0.11
RTN3-204ENST00000354497 PTPN18Q99952 460 aa14.38□□□□□ -0.11
RTN3-204ENST00000354497 TAF1CQ15572 869 aaPredicted RBP14.37□□□□□ -0.11
RTN3-204ENST00000354497 ANKRD13AQ8IZ07 590 aa14.37□□□□□ -0.11
RTN3-204ENST00000354497 OPTNQ96CV9 577 aa14.37□□□□□ -0.11
RTN3-204ENST00000354497 MPHOSPH8Q99549 860 aa14.37□□□□□ -0.11
RTN3-204ENST00000354497 ANKRD2Q9GZV1 360 aa14.37□□□□□ -0.11
RTN3-204ENST00000354497 HTTP42858 3142 aa14.37□□□□□ -0.11
RTN3-204ENST00000354497 MKI67P46013 3256 aaKnown RBP14.36□□□□□ -0.11
RTN3-204ENST00000354497 USP2O75604 605 aaPredicted RBP14.36□□□□□ -0.11
RTN3-204ENST00000354497 ECM2O94769 699 aaPredicted RBP14.36□□□□□ -0.11
RTN3-204ENST00000354497 SH3TC2Q8TF17 1288 aa14.36□□□□□ -0.11
RTN3-204ENST00000354497 ZFYVE28Q9HCC9 887 aa14.36□□□□□ -0.11
RTN3-204ENST00000354497 JAG2Q9Y219 1238 aa14.36□□□□□ -0.11
RTN3-204ENST00000354497 UNCXA6NJT0 531 aa14.35□□□□□ -0.11
RTN3-204ENST00000354497 NEXNQ0ZGT2 675 aa14.35□□□□□ -0.11
RTN3-204ENST00000354497 CERS5Q8N5B7 392 aa14.35□□□□□ -0.11
RTN3-204ENST00000354497 DPF3Q92784 378 aa14.35□□□□□ -0.11
RTN3-204ENST00000354497 CD209Q9NNX6 404 aa14.35□□□□□ -0.11
RTN3-204ENST00000354497 CCL15-CCL14A0A0B4J2E2 113 aa14.34□□□□□ -0.11
RTN3-204ENST00000354497 IGKV5-2P06315 115 aa14.34□□□□□ -0.11
RTN3-204ENST00000354497 ITGA6P23229 1130 aa14.34□□□□□ -0.11
RTN3-204ENST00000354497 RASA3Q14644 834 aa14.34□□□□□ -0.11
RTN3-204ENST00000354497 CCL15Q16663 113 aa14.34□□□□□ -0.11
RTN3-204ENST00000354497 CWF19L2Q2TBE0 894 aaKnown RBP14.34□□□□□ -0.11
RTN3-204ENST00000354497 UBE3BQ7Z3V4 1068 aa14.34□□□□□ -0.11
RTN3-204ENST00000354497 PRMT6Q96LA8 375 aaPredicted RBP14.34□□□□□ -0.11
RTN3-204ENST00000354497 AOX1Q06278 1338 aa14.34□□□□□ -0.11
RTN3-204ENST00000354497 TESPA1A2RU30 521 aaPredicted RBP14.33□□□□□ -0.11
RTN3-204ENST00000354497 PI4KAP2A4QPH2 592 aa14.33□□□□□ -0.11
RTN3-204ENST00000354497 DLL1O00548 723 aa14.33□□□□□ -0.11
RTN3-204ENST00000354497 CHRNDQ07001 517 aa14.33□□□□□ -0.11
RTN3-204ENST00000354497 RALBP1Q15311 655 aa14.33□□□□□ -0.11
RTN3-204ENST00000354497 PI4KAP1Q8N8J0 262 aa14.33□□□□□ -0.11
RTN3-204ENST00000354497 MTMR14Q8NCE2 650 aa14.33□□□□□ -0.11
RTN3-204ENST00000354497 BRI3BPQ8WY22 251 aa14.33□□□□□ -0.11
RTN3-204ENST00000354497 OTUD5Q96G74 571 aa14.33□□□□□ -0.11
RTN3-204ENST00000354497 SNAP23O00161 211 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 EIF5BO60841 1220 aaKnown RBP14.32□□□□□ -0.12
RTN3-204ENST00000354497 WDHD1O75717 1129 aaPredicted RBP14.32□□□□□ -0.12
RTN3-204ENST00000354497 KIF22Q14807 665 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 CCDC30Q5VVM6 783 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 KSR2Q6VAB6 950 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 ZNF804AQ7Z570 1209 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 SLC17A8Q8NDX2 589 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 HELBQ8NG08 1087 aaPredicted RBP14.32□□□□□ -0.12
RTN3-204ENST00000354497 PITPNM1O00562 1244 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 TAF5LO75529 589 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 GTF2A2P52657 109 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 GNAI1P63096 354 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 FAM43AQ8N2R8 423 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 C8orf58Q8NAV2 365 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 ARHGAP39Q9C0H5 1083 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 IFT57Q9NWB7 429 aa14.32□□□□□ -0.12
RTN3-204ENST00000354497 RBM27Q9P2N5 1060 aaKnown RBP14.32□□□□□ -0.12
RTN3-204ENST00000354497 LAMB1P07942 1786 aa14.31□□□□□ -0.12
RTN3-204ENST00000354497 NEURL1BA8MQ27 555 aa14.31□□□□□ -0.12
RTN3-204ENST00000354497 MS4A4AQ96JQ5 239 aa14.31□□□□□ -0.12
RTN3-204ENST00000354497 TSHZ2Q9NRE2 1034 aa14.31□□□□□ -0.12
RTN3-204ENST00000354497 CSADQ9Y600 493 aa14.31□□□□□ -0.12
RTN3-204ENST00000354497 CENPFP49454 3210 aa14.31□□□□□ -0.12
RTN3-204ENST00000354497 MYH3P11055 1940 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms