RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 FILIP1Q7Z7B0 1213 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 RPAINQ86UA6 219 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 FMNL2Q96PY5 1086 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 TRIM5Q9C035 493 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 TRMT1Q9NXH9 659 aaKnown RBP13.79□□□□□ -0.2
RTN3-203ENST00000341307 ANKRD65E5RJM6 399 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 IGKV5-2P06315 115 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 DDB1Q16531 1140 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 BARGINQ6ZT62 677 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 CLIP2Q9UDT6 1046 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 DDX58O95786 925 aaKnown RBP13.78□□□□□ -0.2
RTN3-203ENST00000341307 C11orf91Q3C1V1 193 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 CCAR2Q8N163 923 aaKnown RBP13.78□□□□□ -0.2
RTN3-203ENST00000341307 OSBPL3Q9H4L5 887 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 PDRG1Q9NUG6 133 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 ARGLU1Q9NWB6 273 aaPredicted RBP13.78□□□□□ -0.2
RTN3-203ENST00000341307 PA2G4Q9UQ80 394 aaKnown RBP13.78□□□□□ -0.2
RTN3-203ENST00000341307 PARP4Q9UKK3 1724 aaKnown RBP13.78□□□□□ -0.2
RTN3-203ENST00000341307 PTCD1O75127 700 aaKnown RBP13.78□□□□□ -0.2
RTN3-203ENST00000341307 ALDH1L1O75891 902 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 LRP10Q7Z4F1 713 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 MARCH10Q8NA82 808 aaPredicted RBP13.78□□□□□ -0.2
RTN3-203ENST00000341307 LINS1Q8NG48 757 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 RHPN1Q8TCX5 695 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 CCDC34Q96HJ3 373 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 KAZALD1Q96I82 304 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 MYD88Q99836 296 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 CBX8Q9HC52 389 aa13.78□□□□□ -0.2
RTN3-203ENST00000341307 KIF2AO00139 706 aaPredicted RBP13.77□□□□□ -0.21
RTN3-203ENST00000341307 RPS6KA5O75582 802 aa13.77□□□□□ -0.21
RTN3-203ENST00000341307 MAP4K4O95819 1239 aaPredicted RBP13.77□□□□□ -0.21
RTN3-203ENST00000341307 TRDNQ13061 729 aa13.77□□□□□ -0.21
RTN3-203ENST00000341307 NOL8Q76FK4 1167 aaKnown RBP13.77□□□□□ -0.21
RTN3-203ENST00000341307 KRT27Q7Z3Y8 459 aa13.77□□□□□ -0.21
RTN3-203ENST00000341307 SUCLG2Q96I99 432 aa13.77□□□□□ -0.21
RTN3-203ENST00000341307 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.77□□□□□ -0.213e-6■■■□□ 16.3
RTN3-203ENST00000341307 GRM8O00222 908 aa13.77□□□□□ -0.21
RTN3-203ENST00000341307 MCM2P49736 904 aa13.77□□□□□ -0.21
RTN3-203ENST00000341307 BIRC2Q13490 618 aa13.77□□□□□ -0.21
RTN3-203ENST00000341307 LEKR1Q6ZMV7 388 aa13.77□□□□□ -0.21
RTN3-203ENST00000341307 RILPL2Q969X0 211 aa13.77□□□□□ -0.21
RTN3-203ENST00000341307 THRAP3Q9Y2W1 955 aaKnown RBP13.77□□□□□ -0.21
RTN3-203ENST00000341307 H3BQF6 201 aa13.76□□□□□ -0.21
RTN3-203ENST00000341307 EXOC5O00471 708 aa13.76□□□□□ -0.21
RTN3-203ENST00000341307 SKILP12757 684 aa13.76□□□□□ -0.21
RTN3-203ENST00000341307 SCP2P22307 547 aa13.76□□□□□ -0.21
RTN3-203ENST00000341307 INHBEP58166 350 aa13.76□□□□□ -0.21
RTN3-203ENST00000341307 CCZ1BP86790 482 aa13.76□□□□□ -0.21
RTN3-203ENST00000341307 CCZ1P86791 482 aaPredicted RBP13.76□□□□□ -0.21
RTN3-203ENST00000341307 BICC1Q9H694 974 aaKnown RBP13.76□□□□□ -0.21
RTN3-203ENST00000341307 KCND1Q9NSA2 647 aa13.76□□□□□ -0.21
RTN3-203ENST00000341307 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.76□□□□□ -0.21
RTN3-203ENST00000341307 BRWD3Q6RI45 1802 aa13.76□□□□□ -0.21
RTN3-203ENST00000341307 FIBPO43427 364 aa13.75□□□□□ -0.21
RTN3-203ENST00000341307 TYRO3Q06418 890 aa13.75□□□□□ -0.21
RTN3-203ENST00000341307 ANKRD13DQ6ZTN6 518 aa13.75□□□□□ -0.21
RTN3-203ENST00000341307 DISP2A7MBM2 1401 aa13.75□□□□□ -0.21
RTN3-203ENST00000341307 ATP5J2-PTCD1G3V325 749 aa13.75□□□□□ -0.21
RTN3-203ENST00000341307 OS9Q13438 667 aaPredicted RBP13.75□□□□□ -0.21
RTN3-203ENST00000341307 CWC27Q6UX04 472 aaKnown RBP13.75□□□□□ -0.21
RTN3-203ENST00000341307 JMYQ8N9B5 988 aa13.75□□□□□ -0.21
RTN3-203ENST00000341307 ACSBG1Q96GR2 724 aa13.75□□□□□ -0.21
RTN3-203ENST00000341307 BORCS6Q96GS4 357 aa13.75□□□□□ -0.21
RTN3-203ENST00000341307 CALR3Q96L12 384 aaKnown RBP13.75□□□□□ -0.21
RTN3-203ENST00000341307 PLCD4Q9BRC7 762 aa13.75□□□□□ -0.21
RTN3-203ENST00000341307 NEURL1BA8MQ27 555 aa13.74□□□□□ -0.21
RTN3-203ENST00000341307 NBPF26B4DH59 902 aa13.74□□□□□ -0.21
RTN3-203ENST00000341307 NBPF14Q5TI25 921 aa13.74□□□□□ -0.21
RTN3-203ENST00000341307 CC2D1AQ6P1N0 951 aaPredicted RBP13.74□□□□□ -0.21
RTN3-203ENST00000341307 NBPF10Q6P3W6 841 aaKnown RBP13.74□□□□□ -0.21
RTN3-203ENST00000341307 NBPF15Q8N660 670 aa13.74□□□□□ -0.21
RTN3-203ENST00000341307 TDRD7Q8NHU6 1098 aaKnown RBP13.74□□□□□ -0.21
RTN3-203ENST00000341307 KLHDC4Q8TBB5 520 aa13.74□□□□□ -0.21
RTN3-203ENST00000341307 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.74□□□□□ -0.21
RTN3-203ENST00000341307 SHANK3Q9BYB0 1731 aa13.74□□□□□ -0.21
RTN3-203ENST00000341307 CDC25BP30305 580 aa13.74□□□□□ -0.21
RTN3-203ENST00000341307 RBM28Q9NW13 759 aaKnown RBP13.74□□□□□ -0.21
RTN3-203ENST00000341307 KCNQ2O43526 872 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 A1BGP04217 495 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 NEXNQ0ZGT2 675 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 ANO6Q4KMQ2 910 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 CASC1Q6TDU7 716 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 TADA2BQ86TJ2 420 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 EFCAB13Q8IY85 973 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 KAT2BQ92831 832 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 METTL22Q9BUU2 404 aaPredicted RBP13.73□□□□□ -0.21
RTN3-203ENST00000341307 NEMFO60524 1076 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 RAB11FIP3O75154 756 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 GCKRQ14397 625 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 EPHA10Q5JZY3 1008 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 UBXN4Q92575 508 aa13.73□□□□□ -0.21
RTN3-203ENST00000341307 SYTL4Q96C24 671 aaPredicted RBP13.73□□□□□ -0.21
RTN3-203ENST00000341307 KLHL33A6NCF5 533 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 ERVV-2B6SEH9 535 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 ZSCAN22P10073 491 aaPredicted RBP13.72□□□□□ -0.21
RTN3-203ENST00000341307 MTX1Q13505 466 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 TTLL5Q6EMB2 1281 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 FAXDC2Q96IV6 333 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 SRRTQ9BXP5 876 aaKnown RBP13.72□□□□□ -0.21
RTN3-203ENST00000341307 SIL1Q9H173 461 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 130.3 ms