RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PHKA1P46020 1223 aa19.58■□□□□ 0.72
CCDC28A-201ENST00000332797 GORABQ5T7V8 394 aa19.58■□□□□ 0.72
CCDC28A-201ENST00000332797 CCDC102BQ68D86 513 aa19.58■□□□□ 0.72
CCDC28A-201ENST00000332797 GMLQ99445 158 aa19.58■□□□□ 0.72
CCDC28A-201ENST00000332797 GNL3LQ9NVN8 582 aaKnown RBP19.58■□□□□ 0.72
CCDC28A-201ENST00000332797 FAM205AQ6ZU69 1335 aa19.57■□□□□ 0.72
CCDC28A-201ENST00000332797 TOMM70O94826 608 aa19.57■□□□□ 0.72
CCDC28A-201ENST00000332797 POTEIP0CG38 1075 aa19.57■□□□□ 0.72
CCDC28A-201ENST00000332797 POTEJP0CG39 1038 aa19.57■□□□□ 0.72
CCDC28A-201ENST00000332797 AAMPQ13685 434 aa19.57■□□□□ 0.72
CCDC28A-201ENST00000332797 PNMA8AQ86V59 439 aaPredicted RBP19.57■□□□□ 0.72
CCDC28A-201ENST00000332797 RHPN1Q8TCX5 695 aa19.57■□□□□ 0.72
CCDC28A-201ENST00000332797 MYH13Q9UKX3 1938 aa19.57■□□□□ 0.72
CCDC28A-201ENST00000332797 RAB11FIP3O75154 756 aa19.56■□□□□ 0.72
CCDC28A-201ENST00000332797 USP17L8P0C7I0 530 aa19.56■□□□□ 0.72
CCDC28A-201ENST00000332797 CERS5Q8N5B7 392 aa19.56■□□□□ 0.72
CCDC28A-201ENST00000332797 KIF1BPQ96EK5 621 aa19.56■□□□□ 0.72
CCDC28A-201ENST00000332797 BCL11AQ9H165 835 aa19.56■□□□□ 0.72
CCDC28A-201ENST00000332797 IL1RAPL2Q9NP60 686 aa19.56■□□□□ 0.72
CCDC28A-201ENST00000332797 CLEC11AQ9Y240 323 aa19.56■□□□□ 0.72
CCDC28A-201ENST00000332797 COL1A1P02452 1464 aaPredicted RBP19.55■□□□□ 0.72
CCDC28A-201ENST00000332797 TBC1D10BQ4KMP7 808 aaPredicted RBP19.55■□□□□ 0.72
CCDC28A-201ENST00000332797 MFSD14BQ5SR56 506 aa19.55■□□□□ 0.72
CCDC28A-201ENST00000332797 USP50Q70EL3 339 aaPredicted RBP19.55■□□□□ 0.72
CCDC28A-201ENST00000332797 SAMD7Q7Z3H4 446 aa19.55■□□□□ 0.72
CCDC28A-201ENST00000332797 KIAA0825Q8IV33 1275 aa19.55■□□□□ 0.72
CCDC28A-201ENST00000332797 RBM46Q8TBY0 533 aaKnown RBP19.55■□□□□ 0.72
CCDC28A-201ENST00000332797 TRPM4Q8TD43 1214 aa19.55■□□□□ 0.72
CCDC28A-201ENST00000332797 DBNDD2Q9BQY9 259 aa19.55■□□□□ 0.72
CCDC28A-201ENST00000332797 ZNF280AP59817 542 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 FKBP1AP62942 108 aaKnown RBP19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 RBM26Q5T8P6 1007 aaKnown RBP19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 AACSQ86V21 672 aa19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 EAF2Q96CJ1 260 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 CCDC8Q9H0W5 538 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 ADAMTSL1Q8N6G6 1762 aa19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 F8W031 263 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 LDHDQ86WU2 507 aa19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 OGFOD1Q8N543 542 aa19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 TLR7Q9NYK1 1049 aaKnown RBP19.54■□□□□ 0.72
CCDC28A-201ENST00000332797 SEMA3EO15041 775 aa19.53■□□□□ 0.72
CCDC28A-201ENST00000332797 EGFRP00533 1210 aa19.53■□□□□ 0.72
CCDC28A-201ENST00000332797 KIF4BQ2VIQ3 1234 aa19.53■□□□□ 0.72
CCDC28A-201ENST00000332797 SMC1BQ8NDV3 1235 aa19.53■□□□□ 0.72
CCDC28A-201ENST00000332797 TBC1D22AQ8WUA7 517 aa19.53■□□□□ 0.72
CCDC28A-201ENST00000332797 DCTPP1Q9H773 170 aa19.53■□□□□ 0.72
CCDC28A-201ENST00000332797 DBNLQ9UJU6 430 aaKnown RBP19.53■□□□□ 0.72
CCDC28A-201ENST00000332797 HDAC9Q9UKV0 1011 aa19.53■□□□□ 0.72
CCDC28A-201ENST00000332797 DENND2AQ9ULE3 1009 aa19.53■□□□□ 0.72
CCDC28A-201ENST00000332797 HIRAP54198 1017 aaPredicted RBP19.52■□□□□ 0.72
CCDC28A-201ENST00000332797 RASGRF1Q13972 1273 aa19.52■□□□□ 0.72
CCDC28A-201ENST00000332797 TTC39AQ5SRH9 613 aa19.52■□□□□ 0.72
CCDC28A-201ENST00000332797 CHADLQ6NUI6 762 aa19.52■□□□□ 0.72
CCDC28A-201ENST00000332797 CLASRPQ8N2M8 674 aaKnown RBP19.52■□□□□ 0.72
CCDC28A-201ENST00000332797 LRRCC1Q9C099 1032 aa19.52■□□□□ 0.72
CCDC28A-201ENST00000332797 MYOZ2Q9NPC6 264 aa19.52■□□□□ 0.72
CCDC28A-201ENST00000332797 CCDC158Q5M9N0 1113 aa19.51■□□□□ 0.71
CCDC28A-201ENST00000332797 WDR66Q8TBY9 1149 aa19.51■□□□□ 0.71
CCDC28A-201ENST00000332797 SMARCA5O60264 1052 aaPredicted RBP19.5■□□□□ 0.71
CCDC28A-201ENST00000332797 UQCRFS1P1P0C7P4 283 aa19.5■□□□□ 0.71
CCDC28A-201ENST00000332797 ARID4AP29374 1257 aaPredicted RBP19.5■□□□□ 0.71
CCDC28A-201ENST00000332797 GRIK5Q16478 980 aa19.5■□□□□ 0.71
CCDC28A-201ENST00000332797 TTF2Q9UNY4 1162 aaKnown RBP19.5■□□□□ 0.71
CCDC28A-201ENST00000332797 CENPBP07199 599 aaPredicted RBP19.49■□□□□ 0.71
CCDC28A-201ENST00000332797 IFIT2P09913 472 aaKnown RBP19.49■□□□□ 0.71
CCDC28A-201ENST00000332797 MMP14P50281 582 aa19.49■□□□□ 0.71
CCDC28A-201ENST00000332797 C1QTNF8P60827 252 aa19.49■□□□□ 0.71
CCDC28A-201ENST00000332797 FSTL1Q12841 308 aa19.49■□□□□ 0.71
CCDC28A-201ENST00000332797 HDAC1Q13547 482 aaPredicted RBP19.49■□□□□ 0.71
CCDC28A-201ENST00000332797 MAP1SQ66K74 1059 aaPredicted RBP19.49■□□□□ 0.71
CCDC28A-201ENST00000332797 ZBTB22O15209 634 aa19.48■□□□□ 0.71
CCDC28A-201ENST00000332797 PI16Q6UXB8 463 aa19.48■□□□□ 0.71
CCDC28A-201ENST00000332797 HMG20BQ9P0W2 317 aa19.48■□□□□ 0.71
CCDC28A-201ENST00000332797 PDS5AQ29RF7 1337 aaKnown RBP19.48■□□□□ 0.71
CCDC28A-201ENST00000332797 MCAMP43121 646 aa19.48■□□□□ 0.71
CCDC28A-201ENST00000332797 SCARF1Q14162 830 aa19.48■□□□□ 0.71
CCDC28A-201ENST00000332797 SPATA5Q8NB90 893 aa19.48■□□□□ 0.71
CCDC28A-201ENST00000332797 ZC3H15Q8WU90 426 aaKnown RBP19.47■□□□□ 0.71
CCDC28A-201ENST00000332797 RWDD1Q9H446 243 aaPredicted RBP19.47■□□□□ 0.71
CCDC28A-201ENST00000332797 ASTN2O75129 1339 aaPredicted RBP19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 SALL1Q9NSC2 1324 aa19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 RBM5P52756 815 aaKnown RBP eCLIP19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 DLGAP5Q15398 846 aa19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 NBPF9Q3BBW0 867 aa19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 CFAP100Q494V2 611 aa19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 ZGPATQ8N5A5 531 aaKnown RBP19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 SNRKQ9NRH2 765 aa19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 GGA3Q9NZ52 723 aa19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 ABCF2Q9UG63 623 aa19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 SUGT1Q9Y2Z0 365 aa19.46■□□□□ 0.71
CCDC28A-201ENST00000332797 WNT10BO00744 389 aa19.45■□□□□ 0.7
CCDC28A-201ENST00000332797 LDHBP07195 334 aaKnown RBP19.45■□□□□ 0.7
CCDC28A-201ENST00000332797 PRDX5P30044 214 aa19.45■□□□□ 0.7
CCDC28A-201ENST00000332797 CNTROBQ8N137 903 aa19.45■□□□□ 0.7
CCDC28A-201ENST00000332797 GCC1Q96CN9 775 aa19.45■□□□□ 0.7
CCDC28A-201ENST00000332797 ZNF512BQ96KM6 892 aaPredicted RBP19.45■□□□□ 0.7
CCDC28A-201ENST00000332797 PGAP2Q9UHJ9 254 aa19.45■□□□□ 0.7
CCDC28A-201ENST00000332797 PCDHAC2Q9Y5I4 1007 aa19.45■□□□□ 0.7
CCDC28A-201ENST00000332797 MAST3O60307 1309 aa19.45■□□□□ 0.7
CCDC28A-201ENST00000332797 ANGEL2Q5VTE6 544 aaKnown RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms