RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 KIRREL3Q8IZU9 778 aa13.65□□□□□ -0.22
SHMT2-201ENST00000328923 CABS1Q96KC9 395 aa13.65□□□□□ -0.22
SHMT2-201ENST00000328923 BAG1Q99933 345 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-201ENST00000328923 PAIP2Q9BPZ3 127 aaKnown RBP13.65□□□□□ -0.22
SHMT2-201ENST00000328923 N4BP2Q86UW6 1770 aaPredicted RBP13.65□□□□□ -0.23
SHMT2-201ENST00000328923 ARHGEF10O15013 1369 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 GOLGA6L19H0YKK7 550 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 KINO60870 393 aaKnown RBP13.64□□□□□ -0.23
SHMT2-201ENST00000328923 SNX1Q13596 522 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 WWC2Q6AWC2 1192 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 PARD3BQ8TEW8 1205 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 FMN2Q9NZ56 1722 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 ANKARQ7Z5J8 1434 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 PSDA5PKW4 1024 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-201ENST00000328923 APBB1O00213 710 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 IFIT2P09913 472 aaKnown RBP13.64□□□□□ -0.23
SHMT2-201ENST00000328923 CCT4P50991 539 aaKnown RBP13.64□□□□□ -0.23
SHMT2-201ENST00000328923 DDR1Q08345 913 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 MICAL1Q8TDZ2 1067 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 DDX11Q96FC9 970 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 FAM204AQ9H8W3 233 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 SUGCTQ9HAC7 445 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 KIF9Q9HAQ2 790 aa13.64□□□□□ -0.23
SHMT2-201ENST00000328923 SPATS2LQ9NUQ6 558 aaKnown RBP13.64□□□□□ -0.23
SHMT2-201ENST00000328923 XIRP1Q702N8 1843 aaKnown RBP13.63□□□□□ -0.23
SHMT2-201ENST00000328923 TTC21AQ8NDW8 1320 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 MYO1FO00160 1098 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 VPS53Q5VIR6 699 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 RSRC2Q7L4I2 434 aaKnown RBP13.63□□□□□ -0.23
SHMT2-201ENST00000328923 ARMC2Q8NEN0 867 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 ERCC4Q92889 916 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-201ENST00000328923 LRRCC1Q9C099 1032 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 USP31Q70CQ4 1352 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 CCT5P48643 541 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 MTA1Q13330 715 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 IQCB1Q15051 598 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 TRIM65Q6PJ69 517 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 DNAJC14Q6Y2X3 702 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-201ENST00000328923 IQCA1Q86XH1 822 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 NGDNQ8NEJ9 315 aaKnown RBP13.63□□□□□ -0.23
SHMT2-201ENST00000328923 TTC14Q96N46 770 aa13.63□□□□□ -0.23
SHMT2-201ENST00000328923 LARP6Q9BRS8 491 aaKnown RBP13.63□□□□□ -0.23
SHMT2-201ENST00000328923 CCDC151A5D8V7 595 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 CHL1O00533 1208 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 GCKP35557 465 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 RWDD2BP57060 319 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 TTC6Q86TZ1 520 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 CCDC102AQ96A19 550 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 CAPN7Q9Y6W3 813 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 INPP5BP32019 993 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 RPS6KA3P51812 740 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 MRPL12P52815 198 aaKnown RBP13.62□□□□□ -0.23
SHMT2-201ENST00000328923 C11orf57Q6ZUT1 292 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-201ENST00000328923 HDXQ7Z353 690 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 ANKRD18AQ8IVF6 992 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 PEAK1Q9H792 1746 aa13.62□□□□□ -0.23
SHMT2-201ENST00000328923 ANKRD18BA2A2Z9 1011 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 CHUKO15111 745 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 CLNS1AP54105 237 aaKnown RBP13.61□□□□□ -0.23
SHMT2-201ENST00000328923 PPP2R3AQ06190 1150 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 TRAF1Q13077 416 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 KRT24Q2M2I5 525 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 BEND6Q5SZJ8 279 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-201ENST00000328923 KLHL23Q8NBE8 558 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 RABGGTAQ92696 567 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 TEX13AQ9BXU3 409 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-201ENST00000328923 LIMCH1Q9UPQ0 1083 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 EIF3JO75822 258 aaKnown RBP13.61□□□□□ -0.23
SHMT2-201ENST00000328923 GNAI2P04899 355 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 GSDMDP57764 484 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 TBC1D25Q3MII6 688 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 ARMCX5Q6P1M9 558 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 TRIM74Q86UV6 250 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 TRIM73Q86UV7 250 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 TAOK2Q9UL54 1235 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 ADGRL3Q9HAR2 1447 aa13.61□□□□□ -0.23
SHMT2-201ENST00000328923 TUBB4AP04350 444 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 FAM163BP0C2L3 166 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 BRD3Q15059 726 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 RBM43Q6ZSC3 357 aaKnown RBP13.6□□□□□ -0.23
SHMT2-201ENST00000328923 ANKRD23Q86SG2 305 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 POTEDQ86YR6 584 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 ZBTB10Q96DT7 871 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 SMC3Q9UQE7 1217 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 PIK3C2AO00443 1686 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 CRYBG1Q9Y4K1 1723 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 SNUPNO95149 360 aaKnown RBP13.6□□□□□ -0.23
SHMT2-201ENST00000328923 PEX19P40855 299 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 FAM177A1Q8N128 213 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-201ENST00000328923 FAM71BQ8TC56 605 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 CLSTN2Q9H4D0 955 aa13.6□□□□□ -0.23
SHMT2-201ENST00000328923 TXLNAP40222 546 aa13.59□□□□□ -0.23
SHMT2-201ENST00000328923 EIF4A2Q14240 407 aaKnown RBP13.59□□□□□ -0.23
SHMT2-201ENST00000328923 HSP90B2PQ58FF3 399 aa13.59□□□□□ -0.23
SHMT2-201ENST00000328923 FAM83GA6ND36 823 aa13.59□□□□□ -0.23
SHMT2-201ENST00000328923 ACTN3Q08043 901 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-201ENST00000328923 ACBD3Q9H3P7 528 aa13.59□□□□□ -0.23
SHMT2-201ENST00000328923 MTMR6Q9Y217 621 aa13.59□□□□□ -0.23
SHMT2-201ENST00000328923 EBAG9O00559 213 aa13.58□□□□□ -0.23
SHMT2-201ENST00000328923 ICA1Q05084 483 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms