RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 AFAP1L2Q8N4X5 818 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 HELLSQ9NRZ9 838 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 CLSTN1O94985 981 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 IFFO1Q0D2I5 559 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 NT5C3AQ9H0P0 336 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 PTCH1Q13635 1447 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 PPP2R5AQ15172 486 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 CFAP100Q494V2 611 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 MAP2K1Q02750 393 aaPredicted RBP4.55□□□□□ -1.68
USH2A-201ENST00000307340 GIGYF1O75420 1035 aaPredicted RBP4.55□□□□□ -1.68
USH2A-201ENST00000307340 SSFA2P28290 1259 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 CACNA2D4Q7Z3S7 1137 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 ZNF165P49910 485 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 EIF5P55010 431 aaKnown RBP4.55□□□□□ -1.68
USH2A-201ENST00000307340 SRGAP1Q7Z6B7 1085 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 HAUS1Q96CS2 278 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 TOMM22Q9NS69 142 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 ZFYVE16Q7Z3T8 1539 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 ABCA6Q8N139 1617 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 TTC22Q5TAA0 569 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 NEK1Q96PY6 1258 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 LUC7L3O95232 432 aaKnown RBP4.55□□□□□ -1.68
USH2A-201ENST00000307340 SMYD5Q6GMV2 418 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 CNNM1Q9NRU3 951 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 MTRF1LQ9UGC7 380 aaKnown RBP4.55□□□□□ -1.68
USH2A-201ENST00000307340 KDM3AQ9Y4C1 1321 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 NMIQ13287 307 aaPredicted RBP4.55□□□□□ -1.68
USH2A-201ENST00000307340 PRAM1Q96QH2 718 aa4.55□□□□□ -1.68
USH2A-201ENST00000307340 CWC25Q9NXE8 425 aaPredicted RBP4.55□□□□□ -1.68
USH2A-201ENST00000307340 LMO7Q8WWI1 1683 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 HMOX1P09601 288 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 PARP10Q53GL7 1025 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 CNNM3Q8NE01 707 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 DCTPP1Q9H773 170 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 SNRPA1P09661 255 aaKnown RBP4.54□□□□□ -1.68
USH2A-201ENST00000307340 KIAA0753Q2KHM9 967 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.54□□□□□ -1.68
USH2A-201ENST00000307340 MTUS1Q9ULD2 1270 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 ZKSCAN5Q9Y2L8 839 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 MAGI3Q5TCQ9 1506 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 DISP1Q96F81 1524 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 RBM5P52756 815 aaKnown RBP eCLIP4.54□□□□□ -1.68
USH2A-201ENST00000307340 CABP4P57796 275 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 IQUBQ8NA54 791 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 KIF2CQ99661 725 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 BIN2Q9UBW5 565 aaPredicted RBP4.54□□□□□ -1.68
USH2A-201ENST00000307340 CUL4BQ13620 913 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 TSC1Q92574 1164 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 HSF2BPO75031 334 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 MNAT1P51948 309 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 THEGQ9P2T0 379 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 TNNC1P63316 161 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 RBM6P78332 1123 aaKnown RBP4.54□□□□□ -1.68
USH2A-201ENST00000307340 NAA16Q6N069 864 aaPredicted RBP4.54□□□□□ -1.68
USH2A-201ENST00000307340 TXNDC2Q86VQ3 553 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 TRIM58Q8NG06 486 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 CCDC152Q4G0S7 254 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 HDXQ7Z353 690 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 MAATS1Q7Z4T9 603 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 AK8Q96MA6 479 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 TYW1Q9NV66 732 aaKnown RBP4.54□□□□□ -1.68
USH2A-201ENST00000307340 PTPRTO14522 1441 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 LIG1P18858 919 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 ANKRD2Q9GZV1 360 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 ALCAMQ13740 583 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 CEP135Q66GS9 1140 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 PPP4R3CPQ6ZMV5 832 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 FAM96AQ9H5X1 160 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 E9PCH4 1651 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 SEMA3EO15041 775 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 MFSD6Q6ZSS7 791 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 TBC1D22AQ8WUA7 517 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 TUBB6Q9BUF5 446 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 CCDC88AQ3V6T2 1871 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 CCDC194A0A1B0GVG4 234 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 SLC8A3P57103 927 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 RAB3GAP1Q15042 981 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 SPECC1Q5M775 1068 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 RIMS1Q86UR5 1692 aaKnown RBP4.54□□□□□ -1.68
USH2A-201ENST00000307340 F8W8V4 182 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 SMAP1Q8IYB5 467 aaPredicted RBP4.54□□□□□ -1.68
USH2A-201ENST00000307340 TSNARE1Q96NA8 513 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 NOB1Q9ULX3 412 aaKnown RBP4.54□□□□□ -1.68
USH2A-201ENST00000307340 GOLGA8TH3BQL2 631 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 EBAG9O00559 213 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 GOLGA8HP0CJ92 632 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 CNNM4Q6P4Q7 775 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 NUP133Q8WUM0 1156 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 YWHAEP62258 255 aaKnown RBP4.54□□□□□ -1.68
USH2A-201ENST00000307340 FAN1Q9Y2M0 1017 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 SPEF2Q9C093 1822 aa4.54□□□□□ -1.68
USH2A-201ENST00000307340 TNRQ92752 1358 aa4.53□□□□□ -1.68
USH2A-201ENST00000307340 TRIM27P14373 513 aa4.53□□□□□ -1.68
USH2A-201ENST00000307340 CDC37Q16543 378 aaPredicted RBP4.53□□□□□ -1.68
USH2A-201ENST00000307340 TTC39CQ8N584 583 aa4.53□□□□□ -1.68
USH2A-201ENST00000307340 LNPKQ9C0E8 428 aa4.53□□□□□ -1.68
USH2A-201ENST00000307340 PCDH11XQ9BZA7 1347 aa4.53□□□□□ -1.68
USH2A-201ENST00000307340 PCDH11YQ9BZA8 1340 aa4.53□□□□□ -1.68
USH2A-201ENST00000307340 CPSF1Q10570 1443 aaKnown RBP4.53□□□□□ -1.68
USH2A-201ENST00000307340 PSDA5PKW4 1024 aaPredicted RBP4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms