RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 CRYBG1Q9Y4K1 1723 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 PXDNLA1KZ92 1463 aa12.72□□□□□ -0.37
LSM3-201ENST00000306024 GSPT1P15170 499 aaKnown RBP12.71□□□□□ -0.37
LSM3-201ENST00000306024 TIMM10P62072 90 aa12.71□□□□□ -0.37
LSM3-201ENST00000306024 MRC1P22897 1456 aa12.71□□□□□ -0.37
LSM3-201ENST00000306024 POLA2Q14181 598 aa12.71□□□□□ -0.37
LSM3-201ENST00000306024 TBC1D9BQ66K14 1250 aa12.71□□□□□ -0.37
LSM3-201ENST00000306024 FLAD1Q8NFF5 587 aa12.71□□□□□ -0.37
LSM3-201ENST00000306024 VIRMAQ69YN4 1812 aaKnown RBP12.71□□□□□ -0.38
LSM3-201ENST00000306024 LRRFIP1Q32MZ4 808 aaKnown RBP12.71□□□□□ -0.38
LSM3-201ENST00000306024 ERFEQ4G0M1 354 aa12.71□□□□□ -0.38
LSM3-201ENST00000306024 RNF20Q5VTR2 975 aa12.71□□□□□ -0.38
LSM3-201ENST00000306024 COPRSQ9NQ92 184 aa12.71□□□□□ -0.38
LSM3-201ENST00000306024 ANKIB1Q9P2G1 1089 aa12.71□□□□□ -0.38
LSM3-201ENST00000306024 ZNF215Q9UL58 517 aaPredicted RBP12.71□□□□□ -0.38
LSM3-201ENST00000306024 HNRNPH2P55795 449 aaKnown RBP12.7□□□□□ -0.38
LSM3-201ENST00000306024 FAM200AQ8TCP9 573 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 LARP6Q9BRS8 491 aaKnown RBP12.7□□□□□ -0.38
LSM3-201ENST00000306024 SNRKQ9NRH2 765 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 MTX1Q13505 466 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 WASHC4Q2M389 1173 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 LRRC24Q50LG9 513 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 TXLNBQ8N3L3 684 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 UBXN4Q92575 508 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 FBXW7Q969H0 707 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 SLC5A1P13866 664 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 ADRA2BP18089 450 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 LRP10Q7Z4F1 713 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 LUZP1Q86V48 1076 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 PUS3Q9BZE2 481 aaKnown RBP12.7□□□□□ -0.38
LSM3-201ENST00000306024 PKD1L3Q7Z443 1732 aa12.7□□□□□ -0.38
LSM3-201ENST00000306024 SLU7O95391 586 aaKnown RBP12.69□□□□□ -0.38
LSM3-201ENST00000306024 PTPN12Q05209 780 aaKnown RBP12.69□□□□□ -0.38
LSM3-201ENST00000306024 LEKR1Q6ZMV7 388 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 ZNF34Q8IZ26 560 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 DEF6Q9H4E7 631 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 LRRC37A3O60309 1634 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 AK9Q5TCS8 1911 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 KRBA2Q6ZNG9 492 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 NLGN1Q8N2Q7 840 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 TTLL11Q8NHH1 800 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 ZNF622Q969S3 477 aaKnown RBP eCLIP12.69□□□□□ -0.381e-26■□□□□ 10.3
LSM3-201ENST00000306024 GNL3LQ9NVN8 582 aaKnown RBP12.69□□□□□ -0.38
LSM3-201ENST00000306024 TNNI3KQ59H18 835 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 CWC27Q6UX04 472 aaKnown RBP12.69□□□□□ -0.38
LSM3-201ENST00000306024 NEK11Q8NG66 645 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 DBNDD2Q9BQY9 259 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 ZNF219Q9P2Y4 722 aaPredicted RBP12.69□□□□□ -0.38
LSM3-201ENST00000306024 MORC2Q9Y6X9 1032 aaPredicted RBP12.69□□□□□ -0.38
LSM3-201ENST00000306024 FPGT-TNNI3KV9GXZ4 949 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 NWD2Q9ULI1 1742 aa12.69□□□□□ -0.38
LSM3-201ENST00000306024 EAF2Q96CJ1 260 aaPredicted RBP12.68□□□□□ -0.38
LSM3-201ENST00000306024 LRRC4BQ9NT99 713 aa12.68□□□□□ -0.38
LSM3-201ENST00000306024 A0A1B0GUL7 405 aa12.68□□□□□ -0.38
LSM3-201ENST00000306024 SERPINB2P05120 415 aa12.68□□□□□ -0.38
LSM3-201ENST00000306024 DEFB132Q7Z7B7 95 aa12.68□□□□□ -0.38
LSM3-201ENST00000306024 SEC31BQ9NQW1 1179 aa12.68□□□□□ -0.38
LSM3-201ENST00000306024 CTIFO43310 598 aaKnown RBP12.68□□□□□ -0.38
LSM3-201ENST00000306024 STX6O43752 255 aa12.68□□□□□ -0.38
LSM3-201ENST00000306024 ERO1AQ96HE7 468 aa12.68□□□□□ -0.38
LSM3-201ENST00000306024 KAZALD1Q96I82 304 aa12.68□□□□□ -0.38
LSM3-201ENST00000306024 CACNA1FO60840 1977 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 ZSCAN22P10073 491 aaPredicted RBP12.67□□□□□ -0.38
LSM3-201ENST00000306024 FOXO4P98177 505 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 CREBRFQ8IUR6 639 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 TAF5LO75529 589 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 SYCP1Q15431 976 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 FERMT3Q86UX7 667 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 ST7Q9NRC1 585 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 CCDC171Q6TFL3 1326 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 GOLIM4O00461 696 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 KRT85P78386 507 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 NFIXQ14938 502 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 EZH2Q15910 746 aaKnown RBP12.67□□□□□ -0.38
LSM3-201ENST00000306024 UBN2Q6ZU65 1347 aa12.67□□□□□ -0.38
LSM3-201ENST00000306024 UTYO14607 1347 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 IDH1O75874 414 aaKnown RBP12.66□□□□□ -0.38
LSM3-201ENST00000306024 SKILP12757 684 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 LMAN1P49257 510 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 ANO6Q4KMQ2 910 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 CAVIN4Q5BKX8 364 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 INTS4Q96HW7 963 aaKnown RBP12.66□□□□□ -0.38
LSM3-201ENST00000306024 TTC41PQ6P2S7 1318 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 HIP1O00291 1037 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 SASH1O94885 1247 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 ZNF165P49910 485 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 KCNF1Q9H3M0 494 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 IQSEC3Q9UPP2 1182 aaPredicted RBP12.66□□□□□ -0.38
LSM3-201ENST00000306024 KDM3BQ7LBC6 1761 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 KCPQ6ZWJ8 1503 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 CDHR2Q9BYE9 1310 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 C6orf229H3BNL8 230 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 RPS8P62241 208 aaKnown RBP12.66□□□□□ -0.38
LSM3-201ENST00000306024 RABL6Q3YEC7 729 aaPredicted RBP12.66□□□□□ -0.38
LSM3-201ENST00000306024 ABCF2Q9UG63 623 aa12.66□□□□□ -0.38
LSM3-201ENST00000306024 TYRO3Q06418 890 aa12.65□□□□□ -0.38
LSM3-201ENST00000306024 DNM1Q05193 864 aaKnown RBP12.65□□□□□ -0.38
LSM3-201ENST00000306024 RAD51AP2Q09MP3 1159 aa12.65□□□□□ -0.38
LSM3-201ENST00000306024 KMT5BQ4FZB7 885 aa12.65□□□□□ -0.38
LSM3-201ENST00000306024 EVI5LQ96CN4 794 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms