RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TEFQ10587 303 aa15.58■□□□□ 0.09
SKA3-201ENST00000298260 SF3A1Q15459 793 aaKnown RBP15.58■□□□□ 0.09
SKA3-201ENST00000298260 LEKR1Q6ZMV7 388 aa15.58■□□□□ 0.09
SKA3-201ENST00000298260 GPHNQ9NQX3 736 aaPredicted RBP15.58■□□□□ 0.09
SKA3-201ENST00000298260 C9orf78Q9NZ63 289 aaPredicted RBP15.58■□□□□ 0.09
SKA3-201ENST00000298260 PLEKHG2Q9H7P9 1386 aa15.58■□□□□ 0.08
SKA3-201ENST00000298260 NRDCO43847 1150 aa15.58■□□□□ 0.08
SKA3-201ENST00000298260 SLC3A2P08195 630 aaKnown RBP15.58■□□□□ 0.08
SKA3-201ENST00000298260 MAP3K9P80192 1104 aa15.58■□□□□ 0.08
SKA3-201ENST00000298260 TTC31Q49AM3 519 aaPredicted RBP15.58■□□□□ 0.08
SKA3-201ENST00000298260 RSRC2Q7L4I2 434 aaKnown RBP15.58■□□□□ 0.08
SKA3-201ENST00000298260 GPATCH3Q96I76 525 aa15.58■□□□□ 0.08
SKA3-201ENST00000298260 PNKPQ96T60 521 aa15.58■□□□□ 0.08
SKA3-201ENST00000298260 MTX1Q13505 466 aa15.58■□□□□ 0.08
SKA3-201ENST00000298260 C14orf37Q86TY3 774 aa15.58■□□□□ 0.08
SKA3-201ENST00000298260 MRFAP1Q9Y605 127 aa15.58■□□□□ 0.08
SKA3-201ENST00000298260 PLEKHG1Q9ULL1 1385 aa15.57■□□□□ 0.08
SKA3-201ENST00000298260 MARCKSP29966 332 aaPredicted RBP15.57■□□□□ 0.08
SKA3-201ENST00000298260 ERC1Q8IUD2 1116 aa15.57■□□□□ 0.08
SKA3-201ENST00000298260 GNAT3A8MTJ3 354 aa15.57■□□□□ 0.08
SKA3-201ENST00000298260 RHOXF2BP0C7M4 288 aa15.57■□□□□ 0.08
SKA3-201ENST00000298260 CCDC12Q8WUD4 166 aaPredicted RBP15.57■□□□□ 0.08
SKA3-201ENST00000298260 RHOXF2Q9BQY4 288 aa15.57■□□□□ 0.08
SKA3-201ENST00000298260 RABEP2Q9H5N1 569 aa15.57■□□□□ 0.08
SKA3-201ENST00000298260 LZTFL1Q9NQ48 299 aa15.57■□□□□ 0.08
SKA3-201ENST00000298260 AKAP2Q9Y2D5 859 aa15.57■□□□□ 0.08
SKA3-201ENST00000298260 STK38Q15208 465 aa15.56■□□□□ 0.08
SKA3-201ENST00000298260 HSP90AB4PQ58FF6 505 aa15.56■□□□□ 0.08
SKA3-201ENST00000298260 TMEM139Q8IV31 216 aa15.56■□□□□ 0.08
SKA3-201ENST00000298260 A0A1B0GUL7 405 aa15.56■□□□□ 0.08
SKA3-201ENST00000298260 ZNF202O95125 648 aa15.56■□□□□ 0.08
SKA3-201ENST00000298260 TEX2Q8IWB9 1127 aa15.56■□□□□ 0.08
SKA3-201ENST00000298260 BICC1Q9H694 974 aaKnown RBP15.56■□□□□ 0.08
SKA3-201ENST00000298260 CEP170BQ9Y4F5 1589 aaPredicted RBP15.56■□□□□ 0.08
SKA3-201ENST00000298260 ACEP12821 1306 aa15.56■□□□□ 0.08
SKA3-201ENST00000298260 PEAK1Q9H792 1746 aa15.56■□□□□ 0.08
SKA3-201ENST00000298260 TOP1P11387 765 aaKnown RBP15.55■□□□□ 0.08
SKA3-201ENST00000298260 CCDC102AQ96A19 550 aa15.55■□□□□ 0.08
SKA3-201ENST00000298260 SRRTQ9BXP5 876 aaKnown RBP15.55■□□□□ 0.08
SKA3-201ENST00000298260 INTS13Q9NVM9 706 aa15.55■□□□□ 0.08
SKA3-201ENST00000298260 FANCLQ9NW38 375 aa15.55■□□□□ 0.08
SKA3-201ENST00000298260 FAM208AQ9UK61 1670 aaKnown RBP15.55■□□□□ 0.08
SKA3-201ENST00000298260 AMPHP49418 695 aa15.55■□□□□ 0.08
SKA3-201ENST00000298260 PROSER3Q2NL68 480 aa15.55■□□□□ 0.08
SKA3-201ENST00000298260 SMARCC2Q8TAQ2 1214 aa15.55■□□□□ 0.08
SKA3-201ENST00000298260 KIFC2Q96AC6 838 aa15.55■□□□□ 0.08
SKA3-201ENST00000298260 MRPL44Q9H9J2 332 aaKnown RBP15.55■□□□□ 0.08
SKA3-201ENST00000298260 ABCB6Q9NP58 842 aa15.55■□□□□ 0.08
SKA3-201ENST00000298260 RNF216Q9NWF9 866 aaPredicted RBP15.55■□□□□ 0.08
SKA3-201ENST00000298260 ATP8B1O43520 1251 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 PNOCQ13519 176 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 TTLL5Q6EMB2 1281 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 STK11IPQ8N1F8 1099 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 ANKZF1Q9H8Y5 726 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 MED23Q9ULK4 1368 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 GUCY2CP25092 1073 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 TXLNAP40222 546 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 NLRP12P59046 1061 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 PSME1Q06323 249 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 GOLGA1Q92805 767 aa15.54■□□□□ 0.08
SKA3-201ENST00000298260 ZNF396Q96N95 335 aaPredicted RBP15.54■□□□□ 0.08
SKA3-201ENST00000298260 GEMIN8Q9NWZ8 242 aaKnown RBP15.54■□□□□ 0.08
SKA3-201ENST00000298260 MAP2K7O14733 419 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 LRRC31Q6UY01 552 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 CRYBG1Q9Y4K1 1723 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 MROH7-TTC4A0A0A0MT08 1334 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 PRAMEF22A3QJZ6 481 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 TPM1P09493 284 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 MAGEA9P43362 315 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 BEND6Q5SZJ8 279 aaPredicted RBP15.53■□□□□ 0.08
SKA3-201ENST00000298260 ADALQ6DHV7 355 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 GOLGA6L1Q8N7Z2 621 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 LINC00301Q8NCQ3 95 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 RABGGTAQ92696 567 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 GDAP1L1Q96MZ0 367 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 LGR6Q9HBX8 967 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 MAP3K2Q9Y2U5 619 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 KDM4FA0A1W2PPD8 638 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 FDPSP14324 419 aaKnown RBP15.53■□□□□ 0.08
SKA3-201ENST00000298260 CDC27P30260 824 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 DDX46Q7L014 1031 aaKnown RBP15.53■□□□□ 0.08
SKA3-201ENST00000298260 SUCLG2Q96I99 432 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 BAG1Q99933 345 aaPredicted RBP15.53■□□□□ 0.08
SKA3-201ENST00000298260 TBX22Q9Y458 520 aa15.53■□□□□ 0.08
SKA3-201ENST00000298260 ADAMTSL3P82987 1691 aa15.52■□□□□ 0.08
SKA3-201ENST00000298260 WDHD1O75717 1129 aaPredicted RBP15.52■□□□□ 0.08
SKA3-201ENST00000298260 PFKFB1P16118 471 aa15.52■□□□□ 0.08
SKA3-201ENST00000298260 KCNJ6P48051 423 aa15.52■□□□□ 0.08
SKA3-201ENST00000298260 CHMP4BP1P59074 171 aa15.52■□□□□ 0.08
SKA3-201ENST00000298260 G3BP1Q13283 466 aaKnown RBP eCLIP15.52■□□□□ 0.08
SKA3-201ENST00000298260 NAA16Q6N069 864 aaPredicted RBP15.52■□□□□ 0.08
SKA3-201ENST00000298260 KAZALD1Q96I82 304 aa15.52■□□□□ 0.08
SKA3-201ENST00000298260 DLC1Q96QB1 1528 aa15.52■□□□□ 0.08
SKA3-201ENST00000298260 ZSCAN12O43309 604 aa15.52■□□□□ 0.07
SKA3-201ENST00000298260 PFKFB2O60825 505 aa15.52■□□□□ 0.07
SKA3-201ENST00000298260 ABL1P00519 1130 aa15.52■□□□□ 0.07
SKA3-201ENST00000298260 PDE4BQ07343 736 aa15.52■□□□□ 0.07
SKA3-201ENST00000298260 AIMP1Q12904 312 aaKnown RBP15.52■□□□□ 0.07
SKA3-201ENST00000298260 VSTM4Q8IW00 320 aa15.52■□□□□ 0.07
SKA3-201ENST00000298260 CNNM3Q8NE01 707 aa15.52■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms