RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 CADPS2Q86UW7 1296 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 EDC3Q96F86 508 aaKnown RBP12.1□□□□□ -0.47
SKA1-201ENST00000285116 PRDM11Q9NQV5 511 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 ANO10Q9NW15 660 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 NAP1L2Q9ULW6 460 aaPredicted RBP12.1□□□□□ -0.47
SKA1-201ENST00000285116 TMEM132AQ24JP5 1023 aa12.09□□□□□ -0.47
SKA1-201ENST00000285116 FBXO38Q6PIJ6 1188 aa12.09□□□□□ -0.47
SKA1-201ENST00000285116 ATG9AQ7Z3C6 839 aa12.09□□□□□ -0.47
SKA1-201ENST00000285116 RTEL1Q9NZ71 1219 aa12.09□□□□□ -0.47
SKA1-201ENST00000285116 FBXO3Q9UK99 471 aa12.09□□□□□ -0.47
SKA1-201ENST00000285116 PTPDC1A2A3K4 754 aa12.09□□□□□ -0.47
SKA1-201ENST00000285116 KIF2AO00139 706 aaPredicted RBP12.09□□□□□ -0.47
SKA1-201ENST00000285116 IL15P40933 162 aaPredicted RBP12.09□□□□□ -0.47
SKA1-201ENST00000285116 CCAR1Q8IX12 1150 aaKnown RBP12.09□□□□□ -0.47
SKA1-201ENST00000285116 IPO4Q8TEX9 1081 aaKnown RBP12.09□□□□□ -0.47
SKA1-201ENST00000285116 DNAJC2Q99543 621 aaKnown RBP12.09□□□□□ -0.47
SKA1-201ENST00000285116 PAG1Q9NWQ8 432 aa12.09□□□□□ -0.47
SKA1-201ENST00000285116 IMPACTQ9P2X3 320 aa12.09□□□□□ -0.47
SKA1-201ENST00000285116 KCPQ6ZWJ8 1503 aa12.08□□□□□ -0.47
SKA1-201ENST00000285116 SLU7O95391 586 aaKnown RBP12.08□□□□□ -0.48
SKA1-201ENST00000285116 HSP90B1P14625 803 aaKnown RBP12.08□□□□□ -0.48
SKA1-201ENST00000285116 CCDC73Q6ZRK6 1079 aa12.08□□□□□ -0.48
SKA1-201ENST00000285116 DHX40Q8IX18 779 aaKnown RBP12.08□□□□□ -0.48
SKA1-201ENST00000285116 GOLGA6L19H0YKK7 550 aa12.08□□□□□ -0.48
SKA1-201ENST00000285116 MYL6BP14649 208 aa12.08□□□□□ -0.48
SKA1-201ENST00000285116 UBE3BQ7Z3V4 1068 aa12.08□□□□□ -0.48
SKA1-201ENST00000285116 NFATC2IPQ8NCF5 419 aa12.08□□□□□ -0.48
SKA1-201ENST00000285116 OSBPL5Q9H0X9 879 aaPredicted RBP12.08□□□□□ -0.48
SKA1-201ENST00000285116 GOLPH3LQ9H4A5 285 aa12.08□□□□□ -0.48
SKA1-201ENST00000285116 CPDO75976 1380 aa12.08□□□□□ -0.48
SKA1-201ENST00000285116 CARMIL3Q8ND23 1372 aa12.08□□□□□ -0.48
SKA1-201ENST00000285116 GSDMDP57764 484 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 SLC39A6Q13433 755 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 BMS1Q14692 1282 aaKnown RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 ELF2Q15723 593 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 NAT10Q9H0A0 1025 aaKnown RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 A0A087WZG4 1122 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 E7EWF7 191 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 TULP2O00295 520 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 YEATS4O95619 227 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 TUBB4AP04350 444 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 SKILP12757 684 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 PDIA3P30101 505 aaKnown RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 LRRFIP1Q32MZ4 808 aaKnown RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 ADALQ6DHV7 355 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 CCDC129Q6ZRS4 1044 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 C11orf57Q6ZUT1 292 aaPredicted RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 ILDR1Q86SU0 546 aaPredicted RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 FMR1NBQ8N0W7 255 aaPredicted RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 TTC5Q8N0Z6 440 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 SEC62Q99442 399 aaKnown RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 SHANK3Q9BYB0 1731 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 USP27XA6NNY8 438 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 RNF113AO15541 343 aaKnown RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 KINO60870 393 aaKnown RBP12.07□□□□□ -0.48
SKA1-201ENST00000285116 DTNBO60941 627 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 USP28Q96RU2 1077 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 TSPYL1Q9H0U9 437 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 USP16Q9Y5T5 823 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 ECM29Q5VYK3 1845 aa12.07□□□□□ -0.48
SKA1-201ENST00000285116 HSPD1P10809 573 aaKnown RBP12.06□□□□□ -0.48
SKA1-201ENST00000285116 CEP57L1Q8IYX8 460 aa12.06□□□□□ -0.48
SKA1-201ENST00000285116 SYTL4Q96C24 671 aaPredicted RBP12.06□□□□□ -0.48
SKA1-201ENST00000285116 NOL10Q9BSC4 688 aaKnown RBP12.06□□□□□ -0.48
SKA1-201ENST00000285116 POLR3EQ9NVU0 708 aa12.06□□□□□ -0.48
SKA1-201ENST00000285116 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.06□□□□□ -0.48
SKA1-201ENST00000285116 V9GYY5 206 aaPredicted RBP12.06□□□□□ -0.48
SKA1-201ENST00000285116 TNS2Q63HR2 1409 aa12.06□□□□□ -0.48
SKA1-201ENST00000285116 MAST3O60307 1309 aa12.06□□□□□ -0.48
SKA1-201ENST00000285116 ERICH4A6NGS2 130 aa12.06□□□□□ -0.48
SKA1-201ENST00000285116 ZFYP08048 801 aaPredicted RBP12.06□□□□□ -0.48
SKA1-201ENST00000285116 KCNQ4P56696 695 aa12.06□□□□□ -0.48
SKA1-201ENST00000285116 CCZ1BP86790 482 aa12.06□□□□□ -0.48
SKA1-201ENST00000285116 CCZ1P86791 482 aaPredicted RBP12.06□□□□□ -0.48
SKA1-201ENST00000285116 MRPS27Q92552 414 aaKnown RBP12.06□□□□□ -0.48
SKA1-201ENST00000285116 CYP2C19P33261 490 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 EVA1CP58658 441 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 DDX46Q7L014 1031 aaKnown RBP12.05□□□□□ -0.48
SKA1-201ENST00000285116 BRAPQ7Z569 592 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 CCAR2Q8N163 923 aaKnown RBP12.05□□□□□ -0.48
SKA1-201ENST00000285116 ZNF330Q9Y3S2 320 aaPredicted RBP12.05□□□□□ -0.48
SKA1-201ENST00000285116 ATRNO75882 1429 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 NEDD4P46934 1319 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 CCDC69A6NI79 296 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 APOBRQ0VD83 1088 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 LMBR1LQ6UX01 489 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 TOM1L2Q6ZVM7 507 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 CCDC191Q8NCU4 936 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 KCNG4Q8TDN1 519 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 DDX11Q96FC9 970 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 ARAP2Q8WZ64 1704 aa12.05□□□□□ -0.48
SKA1-201ENST00000285116 VGLL3A8MV65 326 aa12.04□□□□□ -0.48
SKA1-201ENST00000285116 EYA2O00167 538 aa12.04□□□□□ -0.48
SKA1-201ENST00000285116 CYP27B1O15528 508 aa12.04□□□□□ -0.48
SKA1-201ENST00000285116 H2AFXP16104 143 aaPredicted RBP12.04□□□□□ -0.48
SKA1-201ENST00000285116 C8orf37Q96NL8 207 aa12.04□□□□□ -0.48
SKA1-201ENST00000285116 ZNF446Q9NWS9 450 aa12.04□□□□□ -0.48
SKA1-201ENST00000285116 CWC25Q9NXE8 425 aaPredicted RBP12.04□□□□□ -0.48
SKA1-201ENST00000285116 TNS3Q68CZ2 1445 aa12.04□□□□□ -0.48
SKA1-201ENST00000285116 DHX16O60231 1041 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms