RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 MAP2K2P36507 400 aa18.1■□□□□ 0.49
HMGN3-201ENST00000275036 GYG1P46976 350 aa18.1■□□□□ 0.49
HMGN3-201ENST00000275036 PRAMEF18Q5VWM3 479 aa18.1■□□□□ 0.49
HMGN3-201ENST00000275036 ZNF804AQ7Z570 1209 aa18.1■□□□□ 0.49
HMGN3-201ENST00000275036 OGFOD1Q8N543 542 aa18.1■□□□□ 0.49
HMGN3-201ENST00000275036 VGLL2Q8N8G2 317 aa18.1■□□□□ 0.49
HMGN3-201ENST00000275036 MEIS3Q99687 375 aa18.1■□□□□ 0.49
HMGN3-201ENST00000275036 PRDM10Q9NQV6 1147 aa18.1■□□□□ 0.49
HMGN3-201ENST00000275036 PAPPA2Q9BXP8 1791 aa18.09■□□□□ 0.49
HMGN3-201ENST00000275036 ARAP2Q8WZ64 1704 aa18.09■□□□□ 0.49
HMGN3-201ENST00000275036 AOX1Q06278 1338 aa18.09■□□□□ 0.49
HMGN3-201ENST00000275036 ZBED9Q6R2W3 1325 aa18.09■□□□□ 0.49
HMGN3-201ENST00000275036 MROH5Q6ZUA9 1318 aa18.09■□□□□ 0.49
HMGN3-201ENST00000275036 UBTFL1P0CB47 393 aaPredicted RBP18.09■□□□□ 0.49
HMGN3-201ENST00000275036 TRIM27P14373 513 aa18.09■□□□□ 0.49
HMGN3-201ENST00000275036 UBE4AQ14139 1066 aa18.09■□□□□ 0.49
HMGN3-201ENST00000275036 INTS3Q68E01 1043 aaKnown RBP18.09■□□□□ 0.49
HMGN3-201ENST00000275036 MOB2Q70IA6 237 aa18.09■□□□□ 0.49
HMGN3-201ENST00000275036 FAM84BQ96KN1 310 aaPredicted RBP18.09■□□□□ 0.49
HMGN3-201ENST00000275036 TSKSQ9UJT2 592 aa18.09■□□□□ 0.49
HMGN3-201ENST00000275036 ECM29Q5VYK3 1845 aa18.08■□□□□ 0.48
HMGN3-201ENST00000275036 PTPN12Q05209 780 aaKnown RBP18.08■□□□□ 0.48
HMGN3-201ENST00000275036 RGMBQ6NW40 437 aa18.08■□□□□ 0.48
HMGN3-201ENST00000275036 C2orf69Q8N8R5 385 aa18.08■□□□□ 0.48
HMGN3-201ENST00000275036 LRRFIP2Q9Y608 721 aaKnown RBP18.08■□□□□ 0.48
HMGN3-201ENST00000275036 F8W031 263 aaPredicted RBP18.07■□□□□ 0.48
HMGN3-201ENST00000275036 METTL24Q5JXM2 366 aa18.07■□□□□ 0.48
HMGN3-201ENST00000275036 ATF7IPQ6VMQ6 1270 aa18.07■□□□□ 0.48
HMGN3-201ENST00000275036 TDRD7Q8NHU6 1098 aaKnown RBP18.07■□□□□ 0.48
HMGN3-201ENST00000275036 FRAT1Q92837 279 aaPredicted RBP18.07■□□□□ 0.48
HMGN3-201ENST00000275036 MYH13Q9UKX3 1938 aa18.06■□□□□ 0.48
HMGN3-201ENST00000275036 FAM205AQ6ZU69 1335 aa18.06■□□□□ 0.48
HMGN3-201ENST00000275036 IPO8O15397 1037 aaKnown RBP18.05■□□□□ 0.48
HMGN3-201ENST00000275036 PDE8BO95263 885 aa18.05■□□□□ 0.48
HMGN3-201ENST00000275036 SLC10A3P09131 477 aa18.05■□□□□ 0.48
HMGN3-201ENST00000275036 HIBADHP31937 336 aaKnown RBP18.05■□□□□ 0.48
HMGN3-201ENST00000275036 ZNF157P51786 506 aaPredicted RBP18.05■□□□□ 0.48
HMGN3-201ENST00000275036 FKBP1AP62942 108 aaKnown RBP18.05■□□□□ 0.48
HMGN3-201ENST00000275036 NOGQ13253 232 aa18.05■□□□□ 0.48
HMGN3-201ENST00000275036 ATG9AQ7Z3C6 839 aa18.05■□□□□ 0.48
HMGN3-201ENST00000275036 CLUAP1Q96AJ1 413 aa18.05■□□□□ 0.48
HMGN3-201ENST00000275036 HDAC9Q9UKV0 1011 aa18.05■□□□□ 0.48
HMGN3-201ENST00000275036 EYA2O00167 538 aa18.04■□□□□ 0.48
HMGN3-201ENST00000275036 CAPN15O75808 1086 aa18.04■□□□□ 0.48
HMGN3-201ENST00000275036 MMP14P50281 582 aa18.04■□□□□ 0.48
HMGN3-201ENST00000275036 GRIK5Q16478 980 aa18.04■□□□□ 0.48
HMGN3-201ENST00000275036 FBXO33Q7Z6M2 555 aa18.04■□□□□ 0.48
HMGN3-201ENST00000275036 MTMR14Q8NCE2 650 aa18.04■□□□□ 0.48
HMGN3-201ENST00000275036 IQSEC3Q9UPP2 1182 aaPredicted RBP18.04■□□□□ 0.48
HMGN3-201ENST00000275036 SSC5DA1L4H1 1573 aa18.04■□□□□ 0.48
HMGN3-201ENST00000275036 FGFR2P21802 821 aa18.03■□□□□ 0.48
HMGN3-201ENST00000275036 DLGAP5Q15398 846 aa18.03■□□□□ 0.48
HMGN3-201ENST00000275036 CFAP100Q494V2 611 aa18.03■□□□□ 0.48
HMGN3-201ENST00000275036 RASAL3Q86YV0 1011 aa18.03■□□□□ 0.48
HMGN3-201ENST00000275036 PRMT6Q96LA8 375 aaPredicted RBP18.03■□□□□ 0.48
HMGN3-201ENST00000275036 SIL1Q9H173 461 aa18.03■□□□□ 0.48
HMGN3-201ENST00000275036 PA2G4Q9UQ80 394 aaKnown RBP18.03■□□□□ 0.48
HMGN3-201ENST00000275036 SPDYE2BA6NHP3 402 aa18.02■□□□□ 0.48
HMGN3-201ENST00000275036 UBE2Q2LH0YL09 131 aa18.02■□□□□ 0.48
HMGN3-201ENST00000275036 SPDYE6P0CI01 402 aa18.02■□□□□ 0.48
HMGN3-201ENST00000275036 FKBP1BP68106 108 aa18.02■□□□□ 0.48
HMGN3-201ENST00000275036 KIF23Q02241 960 aaPredicted RBP18.02■□□□□ 0.48
HMGN3-201ENST00000275036 MFSD14BQ5SR56 506 aa18.02■□□□□ 0.48
HMGN3-201ENST00000275036 BEGAINQ9BUH8 593 aa18.02■□□□□ 0.48
HMGN3-201ENST00000275036 FZD1Q9UP38 647 aa18.02■□□□□ 0.48
HMGN3-201ENST00000275036 CLRN2A0PK11 232 aa18.01■□□□□ 0.47
HMGN3-201ENST00000275036 GNAI3P08754 354 aa18.01■□□□□ 0.47
HMGN3-201ENST00000275036 BCAMP50895 628 aa18.01■□□□□ 0.47
HMGN3-201ENST00000275036 ZKSCAN2Q63HK3 967 aa18.01■□□□□ 0.47
HMGN3-201ENST00000275036 APOBEC3FQ8IUX4 373 aaKnown RBP18.01■□□□□ 0.47
HMGN3-201ENST00000275036 TMEM57Q8N5G2 664 aa18.01■□□□□ 0.47
HMGN3-201ENST00000275036 CCDC102AQ96A19 550 aa18.01■□□□□ 0.47
HMGN3-201ENST00000275036 COL1A1P02452 1464 aaPredicted RBP18.01■□□□□ 0.47
HMGN3-201ENST00000275036 PUM3Q15397 648 aaKnown RBP18■□□□□ 0.47
HMGN3-201ENST00000275036 HDAC5Q9UQL6 1122 aa18■□□□□ 0.47
HMGN3-201ENST00000275036 CIAO1O76071 339 aa17.99■□□□□ 0.47
HMGN3-201ENST00000275036 CHAF1AQ13111 956 aaPredicted RBP17.99■□□□□ 0.47
HMGN3-201ENST00000275036 PRKG1Q13976 671 aa17.99■□□□□ 0.47
HMGN3-201ENST00000275036 CSRNP1Q96S65 589 aa17.99■□□□□ 0.47
HMGN3-201ENST00000275036 DEFB129Q9H1M3 183 aa17.99■□□□□ 0.47
HMGN3-201ENST00000275036 COPRSQ9NQ92 184 aa17.99■□□□□ 0.47
HMGN3-201ENST00000275036 FBXO3Q9UK99 471 aa17.99■□□□□ 0.47
HMGN3-201ENST00000275036 TTF2Q9UNY4 1162 aaKnown RBP17.99■□□□□ 0.47
HMGN3-201ENST00000275036 RLBP1P12271 317 aa17.98■□□□□ 0.47
HMGN3-201ENST00000275036 MTX1Q13505 466 aa17.98■□□□□ 0.47
HMGN3-201ENST00000275036 CAVIN4Q5BKX8 364 aa17.98■□□□□ 0.47
HMGN3-201ENST00000275036 VPS37DQ86XT2 251 aa17.98■□□□□ 0.47
HMGN3-201ENST00000275036 CASP8AP2Q9UKL3 1982 aa17.97■□□□□ 0.47
HMGN3-201ENST00000275036 SRGAP3O43295 1099 aa17.97■□□□□ 0.47
HMGN3-201ENST00000275036 CA12O43570 354 aa17.97■□□□□ 0.47
HMGN3-201ENST00000275036 IFIT1P09914 478 aaKnown RBP17.97■□□□□ 0.47
HMGN3-201ENST00000275036 LPIN2Q92539 896 aa17.97■□□□□ 0.47
HMGN3-201ENST00000275036 SERPINA10Q9UK55 444 aa17.97■□□□□ 0.47
HMGN3-201ENST00000275036 GNAI2P04899 355 aa17.96■□□□□ 0.47
HMGN3-201ENST00000275036 SLC5A1P13866 664 aa17.96■□□□□ 0.47
HMGN3-201ENST00000275036 IL15P40933 162 aaPredicted RBP17.96■□□□□ 0.47
HMGN3-201ENST00000275036 CRKP46108 304 aa17.96■□□□□ 0.47
HMGN3-201ENST00000275036 RBM5P52756 815 aaKnown RBP eCLIP17.96■□□□□ 0.47
HMGN3-201ENST00000275036 TTLL12Q14166 644 aaPredicted RBP17.96■□□□□ 0.47
HMGN3-201ENST00000275036 ATP2B3Q16720 1220 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms